Rmar024047.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ricinus marginatus
Gene Symbol
-
Assembly
GCA_028565995.1
Location
JAOWBB010008502.1:11433-23974[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 37 0.00025 0.043 15.2 0.4 3 23 31 51 30 51 0.97
2 37 7.5e-06 0.0013 20.0 3.3 1 23 57 79 57 79 0.99
3 37 5.2e-05 0.0089 17.4 0.5 1 23 87 109 87 109 0.97
4 37 0.0017 0.29 12.6 1.8 2 23 116 137 115 137 0.97
5 37 0.0087 1.5 10.4 0.2 2 23 144 166 143 166 0.95
6 37 1.2e-06 0.0002 22.6 1.1 1 23 176 198 176 198 0.98
7 37 2e-05 0.0034 18.7 1.5 1 23 204 226 204 226 0.97
8 37 5.1e-06 0.00086 20.6 1.9 1 23 232 254 232 254 0.98
9 37 0.00019 0.032 15.6 0.4 1 23 260 282 260 282 0.97
10 37 0.00046 0.078 14.4 0.8 2 23 289 310 288 310 0.97
11 37 1.1e-05 0.0018 19.6 1.2 1 23 316 339 316 339 0.98
12 37 0.02 3.4 9.2 5.0 1 23 351 373 351 373 0.97
13 37 3.3e-05 0.0056 18.0 1.5 1 23 379 401 379 401 0.96
14 37 2.6e-07 4.4e-05 24.6 0.4 2 23 408 429 408 429 0.97
15 37 9.6e-06 0.0016 19.7 2.6 1 21 435 455 435 457 0.95
16 37 2.6e-06 0.00044 21.5 0.9 1 23 463 485 463 485 0.98
17 37 9.6 1.6e+03 0.8 0.8 3 11 501 509 500 513 0.82
18 37 3.3e-05 0.0056 18.0 0.7 1 23 532 554 532 554 0.97
19 37 1.4e-05 0.0024 19.2 2.1 1 23 560 582 560 582 0.98
20 37 0.021 3.6 9.2 5.5 1 23 588 610 588 610 0.97
21 37 7.8e-05 0.013 16.8 0.5 2 23 617 638 616 638 0.98
22 37 8.2e-05 0.014 16.8 0.5 1 23 644 666 644 666 0.98
23 37 7.8e-05 0.013 16.8 5.7 1 23 674 696 674 696 0.97
24 37 5e-05 0.0084 17.5 2.8 3 23 703 723 702 723 0.98
25 37 6.4e-05 0.011 17.1 2.0 1 21 729 749 729 750 0.93
26 37 1.5e-06 0.00026 22.2 1.9 3 23 791 811 790 811 0.99
27 37 1.1e-05 0.0019 19.5 0.3 2 23 833 854 832 854 0.96
28 37 0.00087 0.15 13.5 4.1 3 23 863 883 861 883 0.96
29 37 0.00081 0.14 13.6 7.8 1 23 889 912 889 912 0.97
30 37 6.4e-06 0.0011 20.3 1.9 1 23 918 940 918 940 0.98
31 37 3.4e-05 0.0058 18.0 3.3 1 23 946 968 946 969 0.95
32 37 0.0013 0.22 13.0 4.7 1 23 979 1001 979 1001 0.98
33 37 0.00013 0.022 16.2 0.2 1 23 1008 1030 1008 1030 0.98
34 37 1.8e-05 0.003 18.9 0.9 3 23 1038 1058 1036 1058 0.96
35 37 1.8e-06 0.00031 22.0 0.1 1 23 1064 1086 1064 1086 0.99
36 37 0.0042 0.72 11.4 0.2 2 23 1093 1114 1092 1114 0.95
37 37 0.0032 0.54 11.8 0.2 1 23 1255 1277 1255 1277 0.98

Sequence Information

Coding Sequence
ATGAATAGgtCGGTTAAAGCCTTGCCAAGAAAGAGTAAAAGCAGAAAGAGTACGAGAAAAACCTCCGTATCCGATAGTAGCTCAAATGCCTGCGATTACTGTCTGAAGGAGTTTCCCACAAAGAAGCAGCTGGCGCGACATTTAGTAAAGCATTCAGATTTTAGACCATATTCCTGTCAAATCTGCCAGAAGAAGTTCAAACGAAGCTTTGAAGTCAATACACATATGAAAACACACAACAATGTTCAAGAGAGGCAACACATTTGCGATATTTGCGGCCAAGGATTTTCGTTGAAATCTAATCTGGACCTGCATCTAATGAGACACAGACAAGAGTTCAAAGTTAAGTGCAGCTTCTGCGGTAAGGGATTTTATTGTGAGTCAACCCTTCGGGAACACATGAACATTCATACAGGAGAGCGCCCCAATCAATGCGAGTTATGCGGCATGACTTTCGGCTATAAAAACGTGTTGGAAGCGCACAAATTATCGTCTCATCCGGAATCGCTGGATCCGTCGAAGGTCCATAAATGCGAGATATGTCCAAAAGTATTTCCTACAAAGAAATCGCTTCAGGTGCACGAAAACACGCATACGGGAAAAGATAAGTTTGTTTGCATGACCTGTAATAAAACGTATGCAAGtaaaaaattgctgaaaagACATATGGTAAGCCATTCGCAGATCAAACCGTTTTCCTGCGATATTTGCGGGAAATCGTTTAAACGTTCCTTTGAGGTGAAAACGCACAAGAAAATCCACGTTTCGGAAAAGAAGCATGTTTGCGAAATTTGCGGCTACGCTGCCTCACAGAAATCTTATTTGGATTTGCATATCAAACGCCACAAGCAGGACTTTAAAGTAACATGTGAGCAATGCGGAAAGGGATTCTTTTCGGATTTCAAACTGAAAGAGCACATGTATACCCACACCGGGCAGAAACCTTTTCAATGCGAACTCTGCGACAAAGCGTATCCCTACAAAACGAACTTAACAACCCACAAGAGGATTCGCCACCCGGAGGGTAATTCCGTCTCCTCCACAAGAATTCACAAATGTGAAATTTGTTCAAAGAGCTTCTTACACAAAAAATCGATGCTTTTACACATGAACTTACACACGGGTCAAAACAACTACCTCTGTGACGTGTGCGGGAAAGCATTGACGAGCAAGGAACATCTAAAACTTCACAGGAGAAACCATTCGGGAGAAAAACCGAACGTGTGTGCAATCTGTGGTAAAACATTCAATACGAGGGATAACCTGAGGGTTCACGAGAGGACACACACCGGCGAACGACCTTTTGTCTGCGAGTTCTGCGGGAAATCCTTCACCCAGCGCACATCTCTCGTGGTTCACATGCGGTGTCACACTGGGCAGAAGCCTTATGCTTGTCTCATATGCGAAAGAACTTTCACAACGAAAAACTTGCTACGATCACATATGAAAATTCACAACGAAATGGTTGTTGCAAAgaGCACATATATCGGAGATGGATGCTGTGCTATTTGCCAGAAGACTTATCGACTAAATGATACAAAAAGTTGGTCATGCACCAACTGCTGCACGAGGGATTCACATTCGATTAATGCCTTCCAGTGCGACACATGTTTGAAAGAGTTCAGAAGCAAAAAACTCCTCGAAAGGCACATAATCGGCCACAGCCTTATTCGGACTTATTCATGCGACAATTGTCCACGAAAATTCAAGCGATCTTTCGAACTtattaaacacaaaaaaattcataaaggaGTTCCGGTTCATGTGTGTGAATTTTGCGGCTATTCGTCTGTCCACAAATCTTGCCTCGACATACATTTGAAGCGACACAGAAAGGAGTATTCGAACAAGTGTCAGTTATGCggtaaaggttttttttcgaGTTTTGATTTGAACGAGCACTTAAACGTTCATAAAAACATCAAACCGTACATGTGCGACAGTTGCGGACAGTCTTACGCCTCTAAGAACAGTTTGATAATACACAAAAAGACTCACGTCCTCGTCATAGGGGATACTCATGAGTGTCGCCAATGCGGGAAAATGTTCAAGCATAAGAAATCGTTGAGAGTTCACGAGAGATTGCACACTGGGGAAAAAATGCTATGTGAATTTTGcgggaagaaattttcaacaaaaaacaCATTGAAACTCCACAGAATGAGGCACACGGGATCACAGCCGCATACGTGCAATGTGTGCAACAAGAATTTCAGCACAAAATATACTCTTAAGCTTCATAAgatgATTTTAGAGATACGAAacgaggaaaggaaaaatttgaagtgcAAAACATGCGGTGAAAACATTCCGGAGGAACGTATCGAGGAGCACAATTACCTTGCACATCCCGAAGCCTCTTTGCAACTGTGTAATATATGCAACAAAGTTTTCTGCAATCGAGACGATCTTTTGATACACATGCGGTCTCATCCAAAGCCaccgaaattgaaaaaaggtcAAAAATCCGTCGGGGAGCCAGGTCAGACAAAGTGGCCGTGCACTCAATGCGAAAAGGTCTATCCGACAAATCAGCAACTTAAATCACACATGAAAGTGCACAAACATGAACCTTATTCCCTTGATTGCAAAGTATGTCATAAAGTGTTCAAAACAACGCACTATGCTCGAGAACACATGAAGGTACATACCGGAGAACGTccttttaaatgtcatttatgTAACCGCAGTTTTATGCAAAAGCAACATTTAATTAGCCACAAGAAAAGGCAACATTTTAAGGATCATGCTTTTAAGTGCGAACAGTGTGACAAAGGTTTTCATTCCAAAACCGAGCTTCAGGTTCACATGAACTGGCACAATGGTGAGAGACCACATATGTGTGACGTGTGCGGCAAATCCTATCCATCTAAATCGAATATGATGGGGCATAAAAGAACGCATCATCCTCGACCGGATGGTACGCTGAAGAGATATCCATGTACAACTTGCCATCGTCAATTTATGACCAAACGTTCCCTTTTGAATCATACTCGACAGCACACGGGTGAAGCCGGCCATTACATTTGTGATATTTGCAGTAAACCATTATCGAGCAGACAATCGTTGAAGGCACACAGAATGATTCACACGGGGGAGAAGCCAATTATTTGCTCACTGTGCAACAAAGCATTCAGCACTACAAAGTATTTAAGAACGCACATGAAAGCTCATTCCAGTGAAAAACCGTTCAAATGTGATGATTGCGGACTTAGTTTTGCTCAGAAATCTGTTTTAGTTGCTCATCAGAAAATTCATACATCCGAAATCAATCTGAAATGCAACGAATGCGGGTTAACCTTTGCCAATGCGAACATTCTGGCAACGCACAAGCAGTCTCATAATCAGCTTGTACCTCAGTCCCAAGTGCAACCTCTGCCAAGTCATCCTCAAACTCAGCAAGCACTTCAAACTCTTTCTCAGCAACAGCAACAACCGCAACAGCCTCAACAAATTATTATGACCGATCAAAGGGTGGACCCTCCTATTCTCCAACATCAAATAGTTATCCATCATACGACGCAGACGGATCAGCCCACGATGATCGTTGCCCATCAGCGAATCGTTGCCCAGGCGGAGCAACCGATGCTGATGGCGCATCACCGGCTGCAGCCGGAACAAGTGCAGTCCTCTATGTTGGTCGCTCAGCAAAGAACCGCTGGAGATCAGTCGTCGTCTATGGTAGTCACACATCAAAGACTTCAGTCAGAGCAACCTTCGATGATCGTCACTCAGCAGAGAGCTCAAAATGAGCAGGCGCCCTATCAGTGCAATTTATGCAGGATGGAATTCGTTACTAAGGCAATATTGAAAGCTCATCAGGCTAGccataattattcatatactagatttaatatgtaa
Protein Sequence
MNRSVKALPRKSKSRKSTRKTSVSDSSSNACDYCLKEFPTKKQLARHLVKHSDFRPYSCQICQKKFKRSFEVNTHMKTHNNVQERQHICDICGQGFSLKSNLDLHLMRHRQEFKVKCSFCGKGFYCESTLREHMNIHTGERPNQCELCGMTFGYKNVLEAHKLSSHPESLDPSKVHKCEICPKVFPTKKSLQVHENTHTGKDKFVCMTCNKTYASKKLLKRHMVSHSQIKPFSCDICGKSFKRSFEVKTHKKIHVSEKKHVCEICGYAASQKSYLDLHIKRHKQDFKVTCEQCGKGFFSDFKLKEHMYTHTGQKPFQCELCDKAYPYKTNLTTHKRIRHPEGNSVSSTRIHKCEICSKSFLHKKSMLLHMNLHTGQNNYLCDVCGKALTSKEHLKLHRRNHSGEKPNVCAICGKTFNTRDNLRVHERTHTGERPFVCEFCGKSFTQRTSLVVHMRCHTGQKPYACLICERTFTTKNLLRSHMKIHNEMVVAKSTYIGDGCCAICQKTYRLNDTKSWSCTNCCTRDSHSINAFQCDTCLKEFRSKKLLERHIIGHSLIRTYSCDNCPRKFKRSFELIKHKKIHKGVPVHVCEFCGYSSVHKSCLDIHLKRHRKEYSNKCQLCGKGFFSSFDLNEHLNVHKNIKPYMCDSCGQSYASKNSLIIHKKTHVLVIGDTHECRQCGKMFKHKKSLRVHERLHTGEKMLCEFCGKKFSTKNTLKLHRMRHTGSQPHTCNVCNKNFSTKYTLKLHKMILEIRNEERKNLKCKTCGENIPEERIEEHNYLAHPEASLQLCNICNKVFCNRDDLLIHMRSHPKPPKLKKGQKSVGEPGQTKWPCTQCEKVYPTNQQLKSHMKVHKHEPYSLDCKVCHKVFKTTHYAREHMKVHTGERPFKCHLCNRSFMQKQHLISHKKRQHFKDHAFKCEQCDKGFHSKTELQVHMNWHNGERPHMCDVCGKSYPSKSNMMGHKRTHHPRPDGTLKRYPCTTCHRQFMTKRSLLNHTRQHTGEAGHYICDICSKPLSSRQSLKAHRMIHTGEKPIICSLCNKAFSTTKYLRTHMKAHSSEKPFKCDDCGLSFAQKSVLVAHQKIHTSEINLKCNECGLTFANANILATHKQSHNQLVPQSQVQPLPSHPQTQQALQTLSQQQQQPQQPQQIIMTDQRVDPPILQHQIVIHHTTQTDQPTMIVAHQRIVAQAEQPMLMAHHRLQPEQVQSSMLVAQQRTAGDQSSSMVVTHQRLQSEQPSMIVTQQRAQNEQAPYQCNLCRMEFVTKAILKAHQASHNYSYTRFNM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-