Rmar007877.2
Basic Information
- Insect
- Ricinus marginatus
- Gene Symbol
- SMARCC2
- Assembly
- GCA_028565995.1
- Location
- JAOWBB010000012.1:1728845-1736138[+]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.4e-15 1.6e-11 45.1 0.1 3 44 604 645 602 647 0.95
Sequence Information
- Coding Sequence
- ATGATGTCCTTAGGTCCTAAAAAGGACGGGGGAcctaatgtgaaattttttgaatcacCTGAGACATTATCTCTATTTGATGGAATAAAATCATggcttcaaaaaaattgtaagaagTATGTACAAGCTGATCCTCCTACTGCCAAGAGTTTATCCACTTTAGTTATCCAACTAATTCAATTTCAAGAAgacaattttggaaaaaatgtcAGTAAGCCACCACTGACAAGATTGCctaTGAAGTGCTTTTTAGACTTTAAACCTGGTGGGGCTCTTTGTCACATATTAGCAACTGTTTTCAGATTCAAATCTGAGCAGGGATGGAGACGATTTGATTTCCAGtcaccATCTAGAATGGATAGAAATGTGGAAATGTTCATGCAAGTGGAAAAAGCATTAATACAAGCCAAATGTTTGACCATGCCAAATGTTTATATTAGGCCAGAAGTTGATAAAACtatagtttcaaaaattaaggaCATTATTAAACGTCATCAGGGGACAATTActgATAATGAAGATGAAGCAACTCATATTATTCATCCTCCATGTGATCCATTGGACGAAGAATATGCAAGACCTTCGATGAAAAGGGACAAATCCGTTTTAATTCATTGGTATTACTTTCCCGATTCTCATGATAGTTGGATTCAAACTGAATTGCCTATTGATCCTCCAGATTCTCCTCCCGTGCATGTTGGACCTTGGaggGTTGCCGCAACTTGGGTATTGGAGCTTGAGCAATACAATGAATGGATGACAGAAGAAGATTATGAAGTTGacgaaactggaaaaaagaaagttcaTAAGTTGCGTCTATCTGTTGATGATTTAATGGCTTCTTCTGATCCCACTACAAAGAAAAAACCaagcaagagaaaaaaatccccTTCACCACCTCCTAAATCCCTCAGTAAGCGAAAAAGCACTAGGGGACCACCAACACCAGCTATTAACAATAAGAAACACAAAAACGAGGAAGAATCTGAAGATTTAACCAAAGACATGGAAGATCCTCCGTCCGATACTAATATTCAGGAAGTAAACTGCACAAAACCTGGAACTTCATCTAAAAAGGATAATGATTTACAACCGATCAAAGGTGGCACTGTTACCGAGATTGAAGAATCTGATCCTGAAAAAGCGGACGAAAATAGCCAAAATACGAAAACATCGGATACAGCTGTGATTgataaagataaagaaaaggaCAGAGACAGGGATAATAAGCAGGAAGACAATGTTACGGAACAGACTCATCACATTATCATTCCTTCATATTCGGCATGGTTTGATTATAATTCAATACATATAATTGAAAAGAGAGCATTGCCTGAATTTTTTAACGCcaaaaacaaaagcaaaacgcctgaaatttatatttcataccGAAACTTCATGATTGATACTTACAgATTAAATCCAACAGAATATTTAACGAGTACCGCTTGTAGAAGAAACTTAGCCGGAGACGTATGTGCGATTATGAGAGTTCATGCATTCTTGGAGCAGTGGGgtcttataaattatcaagtcGACACAGACAGTAGACCTACACCTATAGGACCCCCTCCAACATCGCATTTTCATGTGCTAACCGATACGCCTTCTGGGTTACAGCCGGTAAACCCAGTAAAAACACCACAGCCTTCTGCAGCAAAACTTTTGCTAGATATGGATAAAAAAGATaaggaaagggaaatgaaaaaagaggGATTAGATATCGGATCGAATTTTGGCTTAAAATTGGATCAatatgcTAAAAAACCAGCAGTCCTAAAGAACAAGGCAGCTGCTGGCATGGCTCGTGATTGGACTGATCAAGAGacacttttattattagagGCTTTGGAATTATATAAGGATGACTGGAATAAAGTTTGTGAGCATGTAGGAACTAGGACACAAGATGAATGTATATTACATTTCCTTAGACTACCTATTGAAGATCCATATCTTGAAGATCCAGAAGCAGgAGGCGGAGCATTAGGACCATTAGCTTACCAACCCATTCCGTTCAGTAAAGCTGGGAATCCAGTTATGTCTACTGTAGCCTTTTTAGCATCGGTGGTAGATCCTAGAGTGGCAGCTTCTGCCGCGAAAGCTGCTATGGAGGAATTTGCCAGTATAAAAGATGAAGTACCTGCTGCATTATTAGATGCCCATATCAAAAATGTCGAGGCTTCCACTACTGATGgtaaattTGATCCTTCAGCTGGTTTGGCGCAAAGTGGAATCGCTGGTACAGgtcaagaaaaagaagaagaggatAAGGAGaagaaagatgaagaaaagttggaaaatgaaaaaaaagtagaaaaatcaGAACCTATGGATGTTGATTCTGAGTCTAAACAAGAAGAGGCGGACAAGAAAGAATCAAGTCCTGCTGTCAGTGTTGCTCCCATTAGTATTCCAGCTTCCACTACTGCTACTCCTGTTGCACCAATTACTTCTAATATTACACCTTCTCCTAATTCTAACAATACAAATACGGGCGGTATTGATGGCGATATAATTATGAAGCAAGAGGTTAAAGATATTGatgagGAAGGGAAGACTGATTCAGTTCCGCAAGAAACGGAACGTGACCGGCTAGTTAAAGATGCTCAGTTGCAGACTGCTGCAGCAGCAGCTCTAGCAGCGGCAGCCGTTAAGGCAAAGCATCTTGCCGCTgtggaagaaaggaaaatcaaatctttGGTAGCTCTTTTAGTGGAAAcgcaaatgaagaaattagaaattaaactCCGTCATTTTGAGGAATTGGAAACAACTATGGAAAGGGAAAGAGAAGGTTTAGAATATCAACGTCAAACATTAATAGCGGAAAGGCAGCAATTTCACTTAGAACAACTCAAAGCAGCTGAGTTTAGGGCGAGGCAACAGGCACATCAGAGGCTAGCTGTAGAACAAGGGGGTCAATGGCCACCGGCGAATTTGCCCCCGAGCAACCAGAGCTCGGGAGAACAAGGTGGTGGAATGATGACGCCAAGTACCACCCCTACACCGCCCTCACCCCAGGCTGTTTTGAGTACAGCGACTTCTGGTCAAGGTCAACCGAATCcagcataa
- Protein Sequence
- MMSLGPKKDGGPNVKFFESPETLSLFDGIKSWLQKNCKKYVQADPPTAKSLSTLVIQLIQFQEDNFGKNVSKPPLTRLPMKCFLDFKPGGALCHILATVFRFKSEQGWRRFDFQSPSRMDRNVEMFMQVEKALIQAKCLTMPNVYIRPEVDKTIVSKIKDIIKRHQGTITDNEDEATHIIHPPCDPLDEEYARPSMKRDKSVLIHWYYFPDSHDSWIQTELPIDPPDSPPVHVGPWRVAATWVLELEQYNEWMTEEDYEVDETGKKKVHKLRLSVDDLMASSDPTTKKKPSKRKKSPSPPPKSLSKRKSTRGPPTPAINNKKHKNEEESEDLTKDMEDPPSDTNIQEVNCTKPGTSSKKDNDLQPIKGGTVTEIEESDPEKADENSQNTKTSDTAVIDKDKEKDRDRDNKQEDNVTEQTHHIIIPSYSAWFDYNSIHIIEKRALPEFFNAKNKSKTPEIYISYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDTDSRPTPIGPPPTSHFHVLTDTPSGLQPVNPVKTPQPSAAKLLLDMDKKDKEREMKKEGLDIGSNFGLKLDQYAKKPAVLKNKAAAGMARDWTDQETLLLLEALELYKDDWNKVCEHVGTRTQDECILHFLRLPIEDPYLEDPEAGGGALGPLAYQPIPFSKAGNPVMSTVAFLASVVDPRVAASAAKAAMEEFASIKDEVPAALLDAHIKNVEASTTDGKFDPSAGLAQSGIAGTGQEKEEEDKEKKDEEKLENEKKVEKSEPMDVDSESKQEEADKKESSPAVSVAPISIPASTTATPVAPITSNITPSPNSNNTNTGGIDGDIIMKQEVKDIDEEGKTDSVPQETERDRLVKDAQLQTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQTLIAERQQFHLEQLKAAEFRARQQAHQRLAVEQGGQWPPANLPPSNQSSGEQGGGMMTPSTTPTPPSPQAVLSTATSGQGQPNPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01251007;
- 90% Identity
- iTF_01307960;
- 80% Identity
- iTF_01307960;