Rmar001410.1
Basic Information
- Insect
- Ricinus marginatus
- Gene Symbol
- bab1
- Assembly
- GCA_028565995.1
- Location
- JAOWBB010000002.1:3852287-3860131[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.7e-15 1.9e-11 44.5 0.1 2 45 378 421 377 421 0.93
Sequence Information
- Coding Sequence
- ATGGGAAGTTCTCAACAATACTGTCTAAGGTGGAACAATCACCGTTCTAACCTCCTGACAGTGTTCGATCAACTGTTACAAAACGAGGCATTCACAGACGTGACTTTGGCATGTGACGGTGGTACTTCGGTAAAATGTCACAAAATGGTGCTGGCCGCATGCAGCCCTTATTTCCAGTGCCTATTCACGGAACTGCCATGCCGGCATCCAGTGGTGGTGCTGAAGGACGTGAAATATAACGACATGAAAGCAATTCTCGAATACATGTACAGAGGAGAAGTGAACGTTGCGCACGATCAGTTGGGAGCCCTGTTAAAAGTGGCGGAGGCTCTAAAGGTGAAAGGTTTAGTCGAAGAGAACGGTCGCGAAGCGAACAGCTCGAACAGTTTACCCTTACCCAGCAGTAAAGTGGAACCAGACAGAAATGACATGAGTTCGCCTCCGCGTATTGGAACGTCGAGCACTTCAATATCGAGCGTGCCACATTCTAGCGTTAGCCCTCCACATTCGACTCACGGAAACGGTGAAAACTGCCTATCAAATTCATACAATAAAAGCCCTTATATGTACGGTAAAAGCCCCGTCATGGACAGAAGTGGGAGAATGAATTTACCGATGTGGGCAGTGCCTTTGCCTCATCACCCGACGGCTCCGGTGGCGCCCCCGAATCATCCGCATGCCGCAGCAACGGCCGCCGCAGCAATGCTATCTTCCTGCTACGAAGCCGCCAGTTCGGATATGTCTCCGCTGCGACGAAAGAAGCTTCAGAGTTTGCTGATGTCGAGAGATACGCCGATCTTGAGGACGGTTTTGGGACAGGGGCAGGTAGATTCTTCCCAGCCCGTTCCCCTGGTATGCCATCCGGACACTCAAGAACGAATTCACTCTAACGGATCAGCTCAGGACAACGATCGAAACGTTAAAGCGGAACCTTCAGAAGATGCTCCGAGCCCATATACAGACATATCCATGATGGATGATGAAACTAGCCCTAGTGATAAGaaTAATAAGTTCGTTCCGACATCATCCCCGCAAGGGGGATTTCCATCCGATATGCGGAACGTCTCTTCAGGGATTGCAACCTATGTGCCTCAACAAAAACCGGAATGGAAGCGATATAAACAATATACACGAAATGATATACTGAGTGCAATCGAAGCCGTTCGGACTGGAATGAGTGCCCTACAAGCGGCTAGGAAGTACGGCGTGCCGTCCAGGACCCTCTATGACAAGGTAAAAAAGCTTGGGATTACGACTAGCAGGCCTTTCAAACGGGGAACTAACGGCGGTAATTCGAATTCATTTCCATACGGAATGAGTCCGGCTTTAAGCCACGTATTCAGCGGTGTCTCCGAGAACGAAGAGCCTATACCCCCCCATCCGGGAGGGGGCATTCTGGAGCCGATATTTCTCCAGCAGGCGCTCGAACGAAGCAAAGGAGAATTCACCGAGAGGGAAGCACTGATGGCACTTGCTTCGGCCCATGCCCAGACCTCTGCCGGCTCTGGATCAGGTTCCCGACATTCCGGGAGCAATCACAATTCGTCCCCGGAAAACAACGGTCGATCTCCGAGCCCGAACATGATGCCGCTGAAGTACATGAGACACGGAAGCATGACGCCTTCGCCCAACAACGAAGAGCGAATCGAAGAGGAAGACCAAGTCGAGGACCTGTCAATATCGCGCAAAGAAATTCATCCGCCTCCCACGGGAAGCGTCATCGTGCCTCCAATGAGTCTCCTTGCTAAGAAAGCCGAAGAACTGTCCGAAATAACGAGGGATCGAGACCGCGGAAGGATGCGAGACAGAGAAGAGCGGGAAAACGAAATGGATCGGGAGAGGGAAAACGAAAGAGATATGGAACGGGAACGGCAAATTCAAGAAGACATAGAAAATCATTCGTCGGATGATTCCAGAAGAGAATAA
- Protein Sequence
- MGSSQQYCLRWNNHRSNLLTVFDQLLQNEAFTDVTLACDGGTSVKCHKMVLAACSPYFQCLFTELPCRHPVVVLKDVKYNDMKAILEYMYRGEVNVAHDQLGALLKVAEALKVKGLVEENGREANSSNSLPLPSSKVEPDRNDMSSPPRIGTSSTSISSVPHSSVSPPHSTHGNGENCLSNSYNKSPYMYGKSPVMDRSGRMNLPMWAVPLPHHPTAPVAPPNHPHAAATAAAAMLSSCYEAASSDMSPLRRKKLQSLLMSRDTPILRTVLGQGQVDSSQPVPLVCHPDTQERIHSNGSAQDNDRNVKAEPSEDAPSPYTDISMMDDETSPSDKNNKFVPTSSPQGGFPSDMRNVSSGIATYVPQQKPEWKRYKQYTRNDILSAIEAVRTGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGTNGGNSNSFPYGMSPALSHVFSGVSENEEPIPPHPGGGILEPIFLQQALERSKGEFTEREALMALASAHAQTSAGSGSGSRHSGSNHNSSPENNGRSPSPNMMPLKYMRHGSMTPSPNNEERIEEEDQVEDLSISRKEIHPPPTGSVIVPPMSLLAKKAEELSEITRDRDRGRMRDREERENEMDRERENERDMERERQIQEDIENHSSDDSRRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01308777;
- 90% Identity
- iTF_01308777;
- 80% Identity
- iTF_01308777;