Rmar008494.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ricinus marginatus
Gene Symbol
lov
Assembly
GCA_028565995.1
Location
JAOWBB010000013.1:427873-432427[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2e-18 8.1e-15 55.2 0.0 1 44 578 621 578 622 0.96

Sequence Information

Coding Sequence
ATGGGTTCGCAGCACTACAGTCTACGATGGAACAACCATCAAAATCACATTCTTAATGCCTTCGACACTCTACTGCAGAACGAAACTCTCGTCGATGTCACTTTGGTCTGCGAGGAGACGAGCGTCCGAGCGCATAAGGTCGTCCTCTCCGCCTGCAGCCCCTACTTCCAAAGGATATTCTCGGAGAATCCCTGCAAGCATCCCATCATCGTCCTCAAGGACCTCAGAGGATGGGAGGTCCAGGCCATCGTCGATTTCATGTACAAAGGAGAAATCAGCGTCGTTCAGGACCAACTCCAGAATCTCATCAAAGCTGCGGAGTCCCTGCAGatCTGCCTCCGACGCTCCGAACCGTTTCCTTCCGTCGGTCTCCGTTTGCGAGAACGCGGCGGTCACTCGTTGCCCCGGTCACTTCGCCATCTTCGCGACGCCAGGGTTGCGAGGCGGCCCCGACAGCGCGAAGTCCACCCGGAATTCCCCGGACGGTTTTCGCTTCGTCCGAAGGCGGAGGCGACCGGTGACGCCGGAGGTCGCGTGCCGGGAGCCCCGACGAGGGCGAAGCCCGAGGAGGTCGCCTCTCGTCAACTTCGAGCGCGGTTTCGCGGACCTGTTTTCGCTCTCGGAAATCGCGAGTCACGTCGGAATGAGAAGCAAGAAAATTTCCGATTCCTAAAACCCCAGCAGAACGCATTTTGCCAAGCAGTCCCCGATTCTCTTTCACCGCGAGGGCTTGAGATTGCGTCGCCCCGTCATCCGCCGGAGGGCAACCCCGATTCGAAAGCAAACAGGAGAAACGCGGTAGCATTGCCGACGACTTCGAAGCAAATAGCAGCGAAGAGAAAAGCCCTCCGATTTTCCGAAGGTTGTGACGGTGCGTGCTTTCAGGTGAGAGGGCTGACGCACACGAAGCAGTTCCCAGCGGACAAGGAGAGCTGCGGATACCAGTCGAATCCGTTTTCGCCTTCTCCGAGCCTGAGTATGTATCCCGGAGCCGGAAGAACGTTTTCCACCCCCGTGGAAAAGGAAACTCTGCCACTGTCGCCCTATTCGCCGGTCCCGCCGCCGAACTTCGACTCGCCATTCAAGATGACATCGTCGCTCCCTCACATGTCGCACATAACTTTTTCCGAAAATCCGCCGCATCCCGATCAGAGGCAAAGAGAGCAGGATCGGGACAGGGATCGAGGATCGCCGATACCAAGACGGAAACAGGCTCGGCCGATGAGAAGATCCGGGGAACTACAGGGTGGTCCTCAAGATCTTAGCAAAAATCCGGGATCTCCGATAGGCGAAATGGCAGAAAATTTATCCCTGAAAAAATCTTCccttagtaataataatattaatTCCGCGCACGGCAGGCAGGAGAGCCAAAGCGAACCGGATTCCGAGACGCAGGACAGGGAACCCATGGAGATCCAGCACTTGTCGGAAGAGTTCCCCATCAGACCCGAACCGATCAACCTCCCTCACTCTCATCCACCCgATCCTTCCGTagacaattcaaattttcttcccaTTCCGTCGCTCTCGGCCCTCTCCATGACTCCGCCACACGTGTTTTCGCTGGACCAGCAACTAGGTTTATTCCCGGGAATAGAAAATTGTCGAAACCCGCTGATCAACGATCTCCCGGATCACAGGAACGAAAATCACATCattagtaaaagaaaaaTGGGAAGACCCAAGGGTCAGCACAGCGCTCCAAGGGGCGGGCCTCCTCGCTCGTGGACGAACGCGGAATTGACGGAGGCCCTTCAGCACGTCTGGAACAAGAAAATGACCACGTCGCAGGCTTCGAGAATATTCGGCATACCGTATAACAGCTTGCTCATGTACGTTCGCGGCAAATACGGTAAAAGCCTGAAACTAGAGCAACTGAAAAAAGACTGTTTAGGAGGTCCGGGGGGGCCGCTCGATCTTCTGGGCCTGGGCCCGAATCCCGGGAACAACAACAACCACCCGACCGGCAAACCCACCGGGGAGGACATTGGCCACGGACAAAGGGGATCGGAACACGATTTGTCGTCTTTGCCGCCGGGATTCAATCCGTACACGGCGGCAAACTTCTATCCGGATTTTGGAGCTCCCTTTCCCGTACCCGTCAGCATGATTCATCTTCTACCTCAATCGGAGAAAAATCGGGAATTGTTTAACCAATCGGAAAAGGCTCGTGAACTATTTAATCAATCGGAAAAAGCGAGAGAATTGTTCAGCCAAACTGAAAAGGCGCGGGAATTGCTGTCGCAAACCGAGAAAGCTCGGGAAATGTTCCACCAGTCGGAAAAGGCCCGAGAGATGTTCCACCAGACGGAAAAGGCTCGCGAGATGTTCCACCAGTCGGAAAAGGCCCGCGAGCTTTTCAACCAAGCCATGCAGTTACCTCAGGATCTGTCCTCGCCGGATTCGAAAGAAGAGGATTGCAGATCGCTCCGATGCAAGTCCAGAGACAACAACAACGGCAGCTCCCTGGAAGGTTCTCCCGTCATGCTGAAGAGCGAGCCTCAGCCGCAACTGCTCGAGAACGGAGACGAAAACTAA
Protein Sequence
MGSQHYSLRWNNHQNHILNAFDTLLQNETLVDVTLVCEETSVRAHKVVLSACSPYFQRIFSENPCKHPIIVLKDLRGWEVQAIVDFMYKGEISVVQDQLQNLIKAAESLQICLRRSEPFPSVGLRLRERGGHSLPRSLRHLRDARVARRPRQREVHPEFPGRFSLRPKAEATGDAGGRVPGAPTRAKPEEVASRQLRARFRGPVFALGNRESRRNEKQENFRFLKPQQNAFCQAVPDSLSPRGLEIASPRHPPEGNPDSKANRRNAVALPTTSKQIAAKRKALRFSEGCDGACFQVRGLTHTKQFPADKESCGYQSNPFSPSPSLSMYPGAGRTFSTPVEKETLPLSPYSPVPPPNFDSPFKMTSSLPHMSHITFSENPPHPDQRQREQDRDRDRGSPIPRRKQARPMRRSGELQGGPQDLSKNPGSPIGEMAENLSLKKSSLSNNNINSAHGRQESQSEPDSETQDREPMEIQHLSEEFPIRPEPINLPHSHPPDPSVDNSNFLPIPSLSALSMTPPHVFSLDQQLGLFPGIENCRNPLINDLPDHRNENHIISKRKMGRPKGQHSAPRGGPPRSWTNAELTEALQHVWNKKMTTSQASRIFGIPYNSLLMYVRGKYGKSLKLEQLKKDCLGGPGGPLDLLGLGPNPGNNNNHPTGKPTGEDIGHGQRGSEHDLSSLPPGFNPYTAANFYPDFGAPFPVPVSMIHLLPQSEKNRELFNQSEKARELFNQSEKARELFSQTEKARELLSQTEKAREMFHQSEKAREMFHQTEKAREMFHQSEKARELFNQAMQLPQDLSSPDSKEEDCRSLRCKSRDNNNGSSLEGSPVMLKSEPQPQLLENGDEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01308797;
90% Identity
iTF_01308797;
80% Identity
iTF_01308797;