Rmar003623.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ricinus marginatus
Gene Symbol
JARID2
Assembly
GCA_028565995.1
Location
JAOWBB010000006.1:349003-354616[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2e-22 8.1e-19 68.8 0.0 6 89 825 906 821 906 0.94

Sequence Information

Coding Sequence
atgaaGGTGATTTCAAGCAAAACTGATGCAAAGAAGAGAAGGAGGGATGATTCTCAGGATGCAATCTCAGAGAGTCCCAAAAGAGCAAAAGTCCACGCTCAGAGAAAATTTGCACAGGGTGCTGCTTATAATGCTCCAGCTATTACTATCATTAAAGACAAGGTTCGACCTCCAACGAATATCAGTGCCCCAGGTCTAATGCTGTCCTCTAAAAGGCCTAACACTGAagattttttgacttttttatgttttagaagaacaaaaatattacctgccaaattagatttttttaaggatgcTTTCAAACATCAGCCAGTTCAATCAACTTATACTCAGAAAACATCAAATGCAATGTCggtatataaaaatcatgcTGCCAAAAGTTTAATaaataaacaaaatacaaaaaagaacGAAAGAAGCGAATGTGTTAAAAAGGCTCAAACGCCGGTGCAAGCCCTTAGACGCAAATATCAAGAACAACGATTGGCTAAACAGAATCCAACGAATGTTACGAAATTAGCtcaaaaagTTAAGGGGAAAAATATGATGAGGACTAGGTCATCGACATTGCAAGAAGAAATTACCAAACCAGTCAAAAAGATTGTTttattgaaagaaagaaaagcgcCTTTGTCAGGATTGAGGAGTGGTTTGCAGAGATCGCCTCCTGAAGCtccaaaaaatgtaaaaaaaccagaaaaatttatcgatggaaaaaatttaagatcccGATTTAAAGGAACCATCATTAGTAAGAAATCTGGGATTAAAGAACCGCCTTTAAAAAAGCCATCCACAAAGAATTTTCAACATGAAGAATCGGGGAAGAAAATAGAGCAAAGTAAAAACGTGAAGAATAGTGAAACATGGACTAGAACCAGAGGTGCCAGagcgaatattaaaaaagttgaaggattttccgatttctcATCGGACGAGAACGAACCTCTTTTAGCCGTGAGAAAAGGGAAACCTGGTTTGAGAACAAGACAAACGGCAAATGAGgtcaaaaaagaaaccaaaacTAATACCATGAAAACAAGATCGCAAATTACGGAAGTTGCTCAGGCCAACGTTCGACCAACAAGAAAAACTAAAGAAGCGGCTGCTATTTATATGGAAATGATAACTAAGAAATTGGTCAGCCCAGAAAAAAGTGGTGATGATGACAGGTCGTCAGTGGACAGTTTCCCTGAATTACCGAGCGCCCGGAGAAATGagCAAAGGGAAAGCGAAATGAAAGCTAAGGCAATGGCAGTTAGAAAAAGCCTAGCTAACGAaagcaaatcaaattttatttcggaaGACAGGGAGAAAGGTGGAAAATTAAGTAACAGTAATAGTCGAAGGAGGGATGCTGGAAAGAGAAATGATGTTTCAAGTAGAAAAGTCGGAACAGTAAAAAACTTCGCAAAGGAAAATCAGTTGACTAAAACAGCTAAAGAATTACCGAAAAGAATCATTAGAGATTTATCTAAAAGGTCTGTGAAAAATCTACCtccgaaaaaaattgtaaaggaaaccgttttaaaaaaaataacaaaggtAGAGCCTTTGAAGAAACTATTGAAAGAGGAATCAAGGGGAAAATCGGCAAAAGAGGAAGAGACAAAAAAAGTTGCTAGGGACGAACACGTAAAAAAGCCAGCAAAAGAGGAGCAGgtaaaaaaagatgaaggaGCCAAGAAAACGCAAGATGGggcaacgaaaaaaatatcaaaggaaGAAACTCTCAAGAAAGTTGTCAACGATGATAACGTGAAAAAGAGTGCTAAAGAGGTCCcgaaaaggaatttgaaaGAAGAATCTCCAAAAAAGTGTTTGAGGactgaaacaataaaaagaggATCACAGAATGAAatgccgaaaaaaatttcgaaagaagATGTACCGAAAAAAAGCCTCCAAGAAgatttagtgaaaaaaaatgttaaagacgAATCGTCAAAAAAACCTACAGAACTGGAAAGTTCAGGAGAAAAGACGGTGCAAAATTCttcggaggaaaaatttcgccAACCGGAAGATGACGTTGAAGTTGATCAAAACGGAGAAGAGACCGAAGACCGTTCGACAACTCCTCGACAACTGGGCAAGAAGCAAGAAGAACCGGAaataaagcaagaaaaaatgGCGGAGAAAGCAAACGgtgtaaaaaaatcaaattcttttagCAAAAAAGgTTGCACAGGTGGGCAGACAGTTTCTTGCACGTCTTCGTCGCCTCAGGAAAAAATGGTATCGAGCCTCGTTGAAGCACCCACCTTTTATCCtacggaaaaagaatttcaggATCCTCTAGAGTTTTTCGAACGGATTCGACCAGCCGCTGAAAACTTTGGCCTGTGCCGCATTGTACCGCCAAGTACATTTAAGCCTGATTGTAAAGTCAGCGACGATATGAGGTTTACAGCTTATAATCAATACGTCCACAGGATGTTTCACAGATGGGGACCTAACATAAAGGAGATGATGGCAATTAAGAAGTACTTAGCAACTCAGAGCATCTCGTTGAAGCAACCGCCTTGGATCGGCAGCATCGAAGTGGATCTACCAAGATTGTATCAATGTGTGCAAAATTGCGGCGGGTTAATGAAAGtaatggaaaagaagaaatggcATCAGGTGGCCGATATGATGAGAATACCGAAAGCTGCTCAAGACAGGGTTACAAAATTAGAtgatatatattgtaaatatcttttacCTTATGATACTTTGTCACATGatgaaaGGCAAAAACTTTTCGATGAAGTCGAAAACGACTGGCTGAAAAGACAGGAGAGCACTGCCGATTCTACAGACGAAGATTCTGAAGAGGAATTTTACATAGACGAATGCGAAGAGTGCATCGTCAAAGGTCGGAACATGGCGCTGAATCAGTTTTATAGAATTGCGAGGAACACGATGAGCATGTGGTTCAAAACTCAAGAGCCGACTCCGTCGGAAGTGGAGAACGAATTCTGGCGCCACGTTAGCGAACGCACCAATCACGTGTGCGTCCATTCAGGTTCCATAGACTCAAGCGGATGGGGGTATGGGTTCCCTgtggcaaaaaataattctttttctaagCATCCGTGGAATTTGAAGGTTCTAACCAATAACAGCGGCTCCATATTGAGGTCCCTTGGACCCGTAATGGGCGTCACAGTGCCTACGCTTCACGTCGGAATGGTTTTCACCGCGTTCTGCTGGTACCGCGATCCACATGGTTTGCCATGGGTGGAGTACCTCCATACGGGAGCTCCGAAAATATGGTACGGCATTTCCGATGATAATTCATCCGTATTTAAGGAGGCACTGACAAAACTGCTGCCGAGATAcataaaaaacaagaaaatatggCTTCCGTCAGACACCGCAATGGTACCCCCGGCTTTGCTGGCCGACCACGGCGTTTCCCTTTGTCATACAATACAGAAGCCAGGTCAGTTCATTCTAGTCTTTCCTCGGGCCTTCACTTCCAGCATATGCACCGGATATTTGGTATCCGAAAGCGTTTACTTCGCTCGCCCAAGTTGGTTGACAACGGCCGAACAAGTCTTCAGAGATATTCGGGATTGTTGCGAACCGACGATGTTTTCCCTAGAAAAATTGCTGTTCAGCATTGCAACGGATACGAGATCCAGCGTGGAAGTCTTAAAACAGGTTCTGCCAATGGTTTGTCACATAAAAGAAAGCGAAATCGAAGCGAGGAAGATTTTGTGGGAGATGGGATTGAAAACATGGGAAAGGCTTCCGGTTAAGGATCAATCCAACAACAAGAAAAAAGGTCGCAGAACTCAGGACGAAGAAGGGGATTACGAATGCATCGTGTGTAGCATGAACTTATGCGTTTCTCTGGTTATGAATTCACAAGAGGAAGGAGTCATGTGTCTGCGGCACGCGATTGATTTGCTGACACAAAAGAGGagtcatttgaaatattgcaGACTGATGTTCGGCTATACACAAGAAGAATTATGCGAGCTAGTTGAAAAGTTGGAGCAGAAAATCGAAAGCAAGAGCCAGAAGAGAGTTCAGAGCAGACCATCGGCGGCCAATGGAAAGTAA
Protein Sequence
MKVISSKTDAKKRRRDDSQDAISESPKRAKVHAQRKFAQGAAYNAPAITIIKDKVRPPTNISAPGLMLSSKRPNTEDFLTFLCFRRTKILPAKLDFFKDAFKHQPVQSTYTQKTSNAMSVYKNHAAKSLINKQNTKKNERSECVKKAQTPVQALRRKYQEQRLAKQNPTNVTKLAQKVKGKNMMRTRSSTLQEEITKPVKKIVLLKERKAPLSGLRSGLQRSPPEAPKNVKKPEKFIDGKNLRSRFKGTIISKKSGIKEPPLKKPSTKNFQHEESGKKIEQSKNVKNSETWTRTRGARANIKKVEGFSDFSSDENEPLLAVRKGKPGLRTRQTANEVKKETKTNTMKTRSQITEVAQANVRPTRKTKEAAAIYMEMITKKLVSPEKSGDDDRSSVDSFPELPSARRNEQRESEMKAKAMAVRKSLANESKSNFISEDREKGGKLSNSNSRRRDAGKRNDVSSRKVGTVKNFAKENQLTKTAKELPKRIIRDLSKRSVKNLPPKKIVKETVLKKITKVEPLKKLLKEESRGKSAKEEETKKVARDEHVKKPAKEEQVKKDEGAKKTQDGATKKISKEETLKKVVNDDNVKKSAKEVPKRNLKEESPKKCLRTETIKRGSQNEMPKKISKEDVPKKSLQEDLVKKNVKDESSKKPTELESSGEKTVQNSSEEKFRQPEDDVEVDQNGEETEDRSTTPRQLGKKQEEPEIKQEKMAEKANGVKKSNSFSKKGCTGGQTVSCTSSSPQEKMVSSLVEAPTFYPTEKEFQDPLEFFERIRPAAENFGLCRIVPPSTFKPDCKVSDDMRFTAYNQYVHRMFHRWGPNIKEMMAIKKYLATQSISLKQPPWIGSIEVDLPRLYQCVQNCGGLMKVMEKKKWHQVADMMRIPKAAQDRVTKLDDIYCKYLLPYDTLSHDERQKLFDEVENDWLKRQESTADSTDEDSEEEFYIDECEECIVKGRNMALNQFYRIARNTMSMWFKTQEPTPSEVENEFWRHVSERTNHVCVHSGSIDSSGWGYGFPVAKNNSFSKHPWNLKVLTNNSGSILRSLGPVMGVTVPTLHVGMVFTAFCWYRDPHGLPWVEYLHTGAPKIWYGISDDNSSVFKEALTKLLPRYIKNKKIWLPSDTAMVPPALLADHGVSLCHTIQKPGQFILVFPRAFTSSICTGYLVSESVYFARPSWLTTAEQVFRDIRDCCEPTMFSLEKLLFSIATDTRSSVEVLKQVLPMVCHIKESEIEARKILWEMGLKTWERLPVKDQSNNKKKGRRTQDEEGDYECIVCSMNLCVSLVMNSQEEGVMCLRHAIDLLTQKRSHLKYCRLMFGYTQEELCELVEKLEQKIESKSQKRVQSRPSAANGK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01307818;
90% Identity
iTF_01307818;
80% Identity
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