Rarc013798.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ricinus arcuatus
Gene Symbol
-
Assembly
GCA_027475445.1
Location
JAOXJT010000008.1:552810-573097[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 3.4 7.3e+02 2.2 1.0 1 23 54 77 54 77 0.92
2 25 0.005 1.1 11.1 1.9 1 23 84 107 84 107 0.98
3 25 0.0013 0.28 12.9 0.7 2 23 184 206 183 206 0.96
4 25 3.6 7.6e+02 2.1 3.7 2 23 213 234 212 234 0.96
5 25 0.012 2.6 9.9 0.8 2 23 240 261 239 261 0.97
6 25 1.8 3.8e+02 3.1 1.4 1 23 267 289 267 290 0.94
7 25 0.34 72 5.3 2.3 2 23 406 428 405 428 0.96
8 25 0.016 3.3 9.5 4.4 2 21 642 661 641 662 0.94
9 25 6.8 1.5e+03 1.2 1.4 1 23 785 807 785 807 0.78
10 25 0.034 7.2 8.5 0.1 2 23 1070 1091 1069 1091 0.95
11 25 0.55 1.2e+02 4.7 0.0 1 23 1099 1121 1099 1121 0.97
12 25 0.18 38 6.2 4.4 1 23 1161 1183 1161 1183 0.96
13 25 0.0055 1.2 11.0 4.5 1 23 1190 1212 1190 1212 0.99
14 25 1.3 2.9e+02 3.4 1.0 1 23 1270 1292 1270 1292 0.97
15 25 0.0082 1.7 10.4 0.4 2 23 1307 1328 1306 1328 0.97
16 25 0.49 1e+02 4.8 2.2 3 23 1420 1440 1419 1440 0.95
17 25 0.05 11 7.9 1.2 3 23 1448 1468 1446 1468 0.98
18 25 0.0063 1.4 10.8 0.7 1 23 1529 1551 1529 1551 0.97
19 25 0.00019 0.04 15.6 1.5 1 23 1557 1579 1557 1579 0.97
20 25 0.0035 0.74 11.6 2.6 1 23 1668 1690 1668 1690 0.97
21 25 0.00013 0.027 16.1 1.9 1 23 1696 1718 1696 1718 0.99
22 25 0.41 88 5.0 0.5 3 23 1800 1820 1800 1820 0.98
23 25 0.38 80 5.2 2.1 1 23 1830 1852 1830 1852 0.96
24 25 0.0055 1.2 10.9 1.2 2 23 2005 2026 2004 2026 0.95
25 25 0.0014 0.31 12.8 2.4 1 23 2032 2054 2032 2054 0.97

Sequence Information

Coding Sequence
ATGGCTCATCGATCCGGCGACGTCGCAGTGGTGCGCAGTGTCGGCAGCCCCCTAGCCGAGGATGGGCAGAAAAGCACCCTCGTGGCAAATGAGGACGACACTTCAGCTGCTGATAATGACGAGGATGGCGATTTGCCTCAATGCAAAATAAAAAGGAACTATTCTTGCAATCTGTGTCCCTTCTTCTCGCAGAATCCGAGGTCCTTTTTGTATCATTCCAGAGACGTTCACTTCGATCGTATCAAGATATACGAATGCTCTCAATGTCTTTACGCTTCCAAGCACAGCCAGAAATTGCAGAGACATATTAACATGATTCACGTGAATGGTAAAAATCGCATGAAACGAGTCGCGAAATCGGTAAAAGGTGAAAAAAAAAGGGAACTTAAGCCAATCAAACCGAAAATTTCCGAAACGATTCCGGTTGTGTGCCCTCCCGTCGAAGAAAATCAAAGAAATGATGTATCACCAATCTCCCTCGATTATTGTGCCAACGAAGACGAAGATGATCAGTATGTTGATGAAAAAGAATTATTGGATAAAGTAATGAAATGTTCGGTTTGCAACTTCACAACCAGAAGCCCTTCCCTGATGCGAAGACACGAAAGGGTGGTGCACCTCAAGAAACGTTTCCTTCGTTGCAGCAAATGTTCTTACGTGACTCACGTTAAAGCGAGATTTACGAAGCATGTGAAATATCATTCGATGCCAATGATCAAATGCGATCTATGTGATTTTCGAACACCCTACAAGTGGAACCTTGATCGCCATTACAAAAATCACTGTGGTTCAGGTGCGTTTCAATGTGCGAAGTGTAACTTTAGGGCCGATATTAAGCAAAGTCTGACAGTACATGAAATGAATCATCATATACCACCAGTTGGTCAAGGTGCTATAATGGCACGAAAAAAGAATAAGGTGGGAGCTTCAGAGACCACTGCCTTGGAATCTGATAATATCGATAAGGATGAACTTGAATTATTACGAATAGAAACAGAAGAAGCAGAACATGTCGAAAATGAAGAGATTAACCAGAAAGATGAAGATGCGCAGAAATCGGGCGAGAAACGGAATCCAAGCAAGAGAAATTTGCAGAATTTGAGAAATGTCAAATTGTCTTATAAACGCGAATCCGTTAACAACAATTTGCAAACCGATTTCATACATCCAGACGATATTGTGCCTAGATATGGTCAAATATACGTGAAAACGTTGAAGTGCAAATTTTGCAGTTACAAAGCCGTGTTCAGCCACGAGTTGTGGCGTCACGAGAAGAGGATCCACGATTACGTTCGCCCGGAAAGCAAGAAGGAAAAGCTACCAGTGAGACCTCCTCCGAAGTTGATTCCACTACAGAGCAAGGCTTCTCCCACACCTCCTTCCTCTCCCATATTAAAGATTCCGGCTGTAAGAAGTAAAGCTTCTACTTCGGACCCCGGGAATGCCGGCAATGCCGAGGAACCGGAATCTCCAAATGACAAGCCCGTGAACGAGAAAGAATTCACGGAAATGTGTAAGAAGTCTTGTCTGACAAGTTCCCTAAAAGATTTTGTATCCTTGATCGGGGACGAAGAGGGTTTAAAAACTATTCCAGATTCTCAGGACGATGTGGATTTGGAATGCAAATCGTGGGCAGAATCCTGCGATGAGGGCGATACAAAAAATAACGAAGATTCCGAAAAAAAAATACAAACCGATTTATTTAAAAAGAAAAACGCCTCGTTTTTTGACAAACTGAAAGAGAAATTGTTGACAGGGACTAGTGAAAGTTCAAATTTGCTCTGTGATTATTGCGGATACGAGGCAAAGTGCTTGTCCGAGGCTGTGGCTCATCAAAAGCGTCATTCGTCCGGGAGTAAAAGCGGCTCCGAGGGACACGCGGAAAACGACATTGTTCTTTCAGGTGCCGAACTTTCGTCCACAAGATGCCAACATTGCAGACAGAGATGCAAAACCAGCTCGGATTTGATCAATCATTTAAAATCTTGCAAAGCATTTGGAGCTGCCTATGATCAGCATTCAAAAATTGAAGGGAACTTGGACAGTCCTTATAAATGCGAGGAAGTGATGTTTGAAGAAGACGTTAAAATGGAGGAAGATGATAATTCGATGGAAAATAAGGTTTTCGTCTGGAACGATCTACCTCAAATGCATGAAAATCTCGAGGATGATGATGAGGTCTTATACGAAGATGAAGTTATGGACAATGATGGGCAGTGCAATGAAGACGATTTTGATATAGATTCTACCCAAGTGTATGGTACCGTGGCCAATAAAGGTTCGGATAATACGGAATCGTGCACTCTTGTCACGGAAGTTGATCCCCGGTTTAGCTTAAGTGCCAAGAAGGTGTTCAAATGTCCCCACTGTTCATTCTGGGCATCGACCGCCTCCAGATTTCACGTTCATATTGTCGGACATCTAAATAAAAAGCCTTTCGAATGTTCGCTCTGTCTCTATCGGTCGAATTGGAGGTGGGATATAACAAAGCACATTCGCTTAAAGTCGGCAAGGGATCCAAGTCATTTAACGGCAAAGGTGAATATGACCGATGAGACCGGTCGGAGAAACTATTCCAAGTACAATAAATATTTGACAGTGATGAAGGTACAGGAACCGTCAGCAGAAAGCAGTGGAACAGGTCGCCGTAGCAGGTTTTGCGATGCTACCCAAGGTACTGCAGAGAATGACGTCATTACATTTCCTGCCCCTCCAAGACTCACGAGAGCACCAACTCCTGGTACGGCAAATCAGATTCCTCAGGGAACTCCGTTAAGACCTCCGCCACCGCTTAAAGCAGCTCATCAGCTTCCGCCTTCGATATCCAAGAAGACGCTGTGGAAATGCAAAAAATGCAATTTCAGGGATCCCAATAAAGATATCGTGTTGTCACACGTGAAGGAACACTATGGTAAAAAAATGTCAGCTTCTCCGTCATCACCACAATCGTCAAATCCAGATGAAGCCGAAGACGCCAGAATTGACCTAAGCACCGACTTATTTCATAAAACTCCTCCATTTAGATGTGGACATTGTCACCAGGTATCAAATTGGAAGCATGTCATACAGCGTCATTGCAGACTTAAACACAATGGATACGTCCTCATAGAACTGGACTGGAAAGAGGATACACATTCGAAGCAATCGATCGATCCTGCCATGAATCTCGATATATCCGGGCCGGTGGATGAATCCTCGGACATTATCTCTTGTGACATCTGTCCTTTTACAACAGATTCAGAAGGAGATCTTACAGCTCACAAGCTGAATCATGTAGATCGCCCAGGTTCCATCTTTAAATGTACACTCTGTCCATTTTACGTACCAAGCAAAATAGCTGTTCTCGAGCACATGGAGGTGCACGGCATCGAGACAAGAGTTCATTTAGCAGGAGCGAAGATTGATAATTTTGAAAATGGAGACTGCAATGAAGATACTTTCTCGAAAAATAAGACAGACGAAGCAGAACAAACAAAGAAATTCAAATGCCGTTATTGCCCATACGTAAGCAAAAGCAAAACCCAGTTTCTCTACCATAAGCAATTCCATAAGCCTCGGGATGCTCCATTTAAATGCATGTATTGCTCTTACAAAGTCTCGAGGCGCCATCTTTTGTATCAGCATCTTCGGGTCCACGAGCCTAGAGAAGAAGGAAACGAGGAACAAAACAATAAAACGAACCTTTCTTCAGAGCAACAAAATTTAGATTTTCCAGTGGATCTTGTGCCAGCTCCTGAGATTAATACTGCTGACATGACTGTGATACCCCTTGTATGGGTTTACAGATCCGGTTATTTTTTAAAAATGTTCAAGTGTAGATGGTGCCCCCATGTAAATGTGCGAAAAGTAAATATCCAAGAACACGAAAAAATGCACCGCGTTGAGGGTAAAAACGATTCTCAAAGATCGTCTAAATTACGTTGTCCATACTGTAGTTATGTATGTAACAACGCAGGGGTTTTGTCGTCCCATGTGAAAGTCCACCAGGGCTTTTACGGTGAAATCCGCTCTTTAGTGGATCCTACGCGAACGGATGCCGAACAGATAGAAAACATGCAGAACGAAATTCGTATTGTCGAACCCGAGGTTGTGATAAGTGAGGATGTGGTAAGCGAAGTGGGTGAAGAGCGGGATATCACAGACAAAAAATCATACGAGGAGGACATTTCTTCGCATCCCGAAAAAAGATATAATCAAAATTTGAACAAAAGGAAACCTGTCGAAATGAACGAGGAGAACAAGAAGATACTCAGTTTTTGCAAAAAGTGTCCAGCAAGGTTCTTTTTGAAAAGAGAATTGAGAATTCATTCGAAATTTCACTTGATTCGATCTCCATTTGGATGCCCCTTCTGCTCTTACACTGCCCGACAGAGACCTCATCTTTTGTCCCACTATAAAGTTCATAGCGAAGAATATCAACAAAGGACGGCAGAACTGATTCTTTCTTATGGTGTTTCGGAGGACAACCCGAGGCAAAATACGATTGTCATCACTGGAGAATCCGATGTGATCGAAGGACCAGTTTGGATGCTGGAGAATTGCCCTCTGGAAAAGTTCAAATCGCAACATAAGCCCAAGGCAAACTACACATGCGACAAATGTCCAGCGAAGTTTTTTAAGCCGTTTGCGCTGCAATACCATCTCAGTCTTCATGGAGGTCTGCAAAAGCACAAATGTAAATATTGTGATTACGCGGTTAAAACCTATGGTAATTTGATGAGGCATGAGCTGGTGCACTTGGGAGTGAGTAAGAAGTCTGCCCTCAAGAGCAAGAACTTGGGATCTGTTCCTCTTTCGGGAACTGATCTGTTCATTCAAAGAAAGGAGGCGGAATTACAAAATGACGATCTTGCCGACGCTTTAAAAATGAAATCCAGATCTGCCACAGTCGACGTCCTAAATAAAAAAAAATCGGATCCTTTGTTTGGCAATTTAATGCATGGATCTCCTGATTTTATATATCCTACTTACCTGAAGAACGGTAAAATAAAGGAAAAGCGTTACAAATGCCATAAATGCCCTTCTGCTTTCGAAAAACGTGATCAGTATAAGATTCACCTTTCGCTACACGGATCGAAGCAGAAATATAGGTGCGAAAAGTGCGATTATTCGGTTAAATATTATGCGAATTACGTCCAGCACATGAGAAAGCATCAAAATCACGACGAGGCCTTGGAAGCTCGAAGGTCGGAAGGTGAAACGATGCAGTCTTTCGAAGAGAGTTTGCATCCTTCCATTCACGAGGACAATCAGGACGATTTCAGTATAGAATTTCAAAGTACGGGCAAAAGACCAAATCGGTCTTATGATCTGACCCTCGTGGAACAGCAGACCATAATTCTGCAGGAAAAGAAAAAAATACCGGAGAACAAAGATGAGGATCGAAAACTGAATTGGTGTGCATATTGCCCGTATTCGAGCAACCGAAGGGATGCCGTAGACAATCACAAGAAGAAACATTTTTGCGTTTCCGGCATAAAATCTAGTTTCAAATGCATGCATTGTGATTACATGGCCAGTCAGATCAATTTCTTAAGAGCGCACAACAAGCTTCACTTCAGTAGATCCGCTCGATATAAGGCTGAGGCCTTTTTGAAGTGCGAAAAAATGGAGCTTTGGTGCATCGAGGACAAAAATAAGTACGATCACAAATATGGCTCAGAGTTCAGGACCCTTCTCTTCAGGGACAGAGGCGAAAACTGCGAGGATCGCTTCTTTCCCCCCGTGTCTCCCCAATATTACGAGGACGAAGAAGATTGGAAAATCTACGTGAATCCCGAAACGGGAGAACCGATAATAGACAAGGAAGTCATGGACCCTGCTCCGGAAAGCGATGCGACGATGGATGTGGAAAACGAAGATCCTCTTGTGGCTGATTTAGAAAGCGGAGATCTGAGGAATGAAGATCTCATCGAGATGGTAGAAGAGCAGGTAGAGGAAGTCTCGCAGGAGGAAAGGTTTTCGGAGGAAACACCCAAACCGAAGATAAAGCGATGGAGAGGCAAGAATTGGAAGTGCAAGAAATGCCCCCACGCTTTTGGAAAGAAAGACCAGTACTTACGGCATGTCGCTCTTCACGGCTCGAATCAGAGGCACAATTGCGATATTTGCGATTACTCCGTTAAGTTCTACACCAACTACGTCCAGCATATGAGAATGCATCAGATGCACGAGCCGGACAGAGTGATTTACGTAAAAAAAAACGGTCAAAACTTAGAGGAGAATGCTATGAAGTTGTTGAAGGAGGCCGAATGCAGAAGAGACATAGAACTGTACATGAAGGATATGGAAGAGGTGACAGGCTACGAGTCTGACTCGATCCTCAGCCATGTCGAAGACAAAGCGGCCGTGGAGCATTGTGAGGAGACCGAAGCTGACTATTCGAGCTTGACGGACGGGACGGAAGTGTCCATCAGCTCGGAGGATGCCGTATGCCAAGACATTGTGGACAGCACTAACTTAACAGGAACCGGTGACTTTGTAAACGAGGAGAAGACTGCTTAA
Protein Sequence
MAHRSGDVAVVRSVGSPLAEDGQKSTLVANEDDTSAADNDEDGDLPQCKIKRNYSCNLCPFFSQNPRSFLYHSRDVHFDRIKIYECSQCLYASKHSQKLQRHINMIHVNGKNRMKRVAKSVKGEKKRELKPIKPKISETIPVVCPPVEENQRNDVSPISLDYCANEDEDDQYVDEKELLDKVMKCSVCNFTTRSPSLMRRHERVVHLKKRFLRCSKCSYVTHVKARFTKHVKYHSMPMIKCDLCDFRTPYKWNLDRHYKNHCGSGAFQCAKCNFRADIKQSLTVHEMNHHIPPVGQGAIMARKKNKVGASETTALESDNIDKDELELLRIETEEAEHVENEEINQKDEDAQKSGEKRNPSKRNLQNLRNVKLSYKRESVNNNLQTDFIHPDDIVPRYGQIYVKTLKCKFCSYKAVFSHELWRHEKRIHDYVRPESKKEKLPVRPPPKLIPLQSKASPTPPSSPILKIPAVRSKASTSDPGNAGNAEEPESPNDKPVNEKEFTEMCKKSCLTSSLKDFVSLIGDEEGLKTIPDSQDDVDLECKSWAESCDEGDTKNNEDSEKKIQTDLFKKKNASFFDKLKEKLLTGTSESSNLLCDYCGYEAKCLSEAVAHQKRHSSGSKSGSEGHAENDIVLSGAELSSTRCQHCRQRCKTSSDLINHLKSCKAFGAAYDQHSKIEGNLDSPYKCEEVMFEEDVKMEEDDNSMENKVFVWNDLPQMHENLEDDDEVLYEDEVMDNDGQCNEDDFDIDSTQVYGTVANKGSDNTESCTLVTEVDPRFSLSAKKVFKCPHCSFWASTASRFHVHIVGHLNKKPFECSLCLYRSNWRWDITKHIRLKSARDPSHLTAKVNMTDETGRRNYSKYNKYLTVMKVQEPSAESSGTGRRSRFCDATQGTAENDVITFPAPPRLTRAPTPGTANQIPQGTPLRPPPPLKAAHQLPPSISKKTLWKCKKCNFRDPNKDIVLSHVKEHYGKKMSASPSSPQSSNPDEAEDARIDLSTDLFHKTPPFRCGHCHQVSNWKHVIQRHCRLKHNGYVLIELDWKEDTHSKQSIDPAMNLDISGPVDESSDIISCDICPFTTDSEGDLTAHKLNHVDRPGSIFKCTLCPFYVPSKIAVLEHMEVHGIETRVHLAGAKIDNFENGDCNEDTFSKNKTDEAEQTKKFKCRYCPYVSKSKTQFLYHKQFHKPRDAPFKCMYCSYKVSRRHLLYQHLRVHEPREEGNEEQNNKTNLSSEQQNLDFPVDLVPAPEINTADMTVIPLVWVYRSGYFLKMFKCRWCPHVNVRKVNIQEHEKMHRVEGKNDSQRSSKLRCPYCSYVCNNAGVLSSHVKVHQGFYGEIRSLVDPTRTDAEQIENMQNEIRIVEPEVVISEDVVSEVGEERDITDKKSYEEDISSHPEKRYNQNLNKRKPVEMNEENKKILSFCKKCPARFFLKRELRIHSKFHLIRSPFGCPFCSYTARQRPHLLSHYKVHSEEYQQRTAELILSYGVSEDNPRQNTIVITGESDVIEGPVWMLENCPLEKFKSQHKPKANYTCDKCPAKFFKPFALQYHLSLHGGLQKHKCKYCDYAVKTYGNLMRHELVHLGVSKKSALKSKNLGSVPLSGTDLFIQRKEAELQNDDLADALKMKSRSATVDVLNKKKSDPLFGNLMHGSPDFIYPTYLKNGKIKEKRYKCHKCPSAFEKRDQYKIHLSLHGSKQKYRCEKCDYSVKYYANYVQHMRKHQNHDEALEARRSEGETMQSFEESLHPSIHEDNQDDFSIEFQSTGKRPNRSYDLTLVEQQTIILQEKKKIPENKDEDRKLNWCAYCPYSSNRRDAVDNHKKKHFCVSGIKSSFKCMHCDYMASQINFLRAHNKLHFSRSARYKAEAFLKCEKMELWCIEDKNKYDHKYGSEFRTLLFRDRGENCEDRFFPPVSPQYYEDEEDWKIYVNPETGEPIIDKEVMDPAPESDATMDVENEDPLVADLESGDLRNEDLIEMVEEQVEEVSQEERFSEETPKPKIKRWRGKNWKCKKCPHAFGKKDQYLRHVALHGSNQRHNCDICDYSVKFYTNYVQHMRMHQMHEPDRVIYVKKNGQNLEENAMKLLKEAECRRDIELYMKDMEEVTGYESDSILSHVEDKAAVEHCEETEADYSSLTDGTEVSISSEDAVCQDIVDSTNLTGTGDFVNEEKTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01308973;
90% Identity
iTF_01308973;
80% Identity
iTF_01308973;