Rarc015671.1
Basic Information
- Insect
- Ricinus arcuatus
- Gene Symbol
- -
- Assembly
- GCA_027475445.1
- Location
- JAOXJT010002796.1:8263-10545[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.8e-06 0.0019 19.8 1.5 1 23 74 96 74 96 0.98 2 12 0.061 13 7.7 1.1 2 23 316 338 315 338 0.94 3 12 0.00042 0.091 14.4 1.1 1 23 344 366 344 366 0.98 4 12 0.015 3.2 9.6 1.7 1 19 373 391 373 394 0.93 5 12 0.012 2.5 9.9 4.7 2 21 422 441 421 442 0.93 6 12 0.34 72 5.3 0.8 1 23 533 556 533 556 0.86 7 12 2.3 5e+02 2.7 3.2 2 23 563 582 562 582 0.92 8 12 0.0049 1 11.1 0.7 1 23 588 610 588 610 0.88 9 12 0.034 7.3 8.4 1.0 1 21 615 635 615 636 0.95 10 12 4e-06 0.00085 20.8 0.4 2 23 649 670 648 670 0.96 11 12 0.00048 0.1 14.3 2.0 3 23 684 704 682 704 0.97 12 12 0.001 0.22 13.3 0.6 1 23 710 732 710 732 0.97
Sequence Information
- Coding Sequence
- ATGAATTGTTCCAAAAGTGCAAGAAAAATTAGATTATCTGAATTCGATTATAAAAAGTGCAGACTTTGCAATGAAAATTTTTTAGAAGAAGAAATTTTACTTCAACATTTTAGCAAAATTCACCCAGGAGAAAATGCTCATCAGTGTTTCTGCTGCGAATTATGCCTGGCCACGTTTGAAGATTTGCAAAAACACATCCACATGCATAATACACAAAAGTTTACTTGCAGTTTATGCGGAAAACCATATACGAGTCAAGAGGGATTTAGAAAACACAGATTAAAACACAAAGGAGCTGAATTTAAATGTCAGTTTTGTGATTCTCAGTTTTTAGTCGAAAATAGATTAAAATATCATGAGAAAAATTGTAAGAAAAATCCAGAAAACGGATATGATTTTCCAACTACTAACTTGATATCTAATAAAAAATTTGATAGGCCCAAACAAAGTAGACAGTTGCACTGGGAAAGTAGAATTATAATGACACATTTAAGAACGGATCCTAATTCTGAAAAGAGCAAACAATTAAGTTTATCCAATAGTCACAAGGATAATATTTTGAGCTCTAATTTTTTTGATGATTCTGATGACGACGTAATTGAATCAAATGTACGAGGTTGGTTCGATGATTATTATAAAACGGAAGAAGATGATTTAGCATTTGGTGTTAGGAAAGAAAATTCTACTGTCAGTCAAAGTCAAGAGTTAAGTGTGGAAAATACTCAGTCTTTGAAAAAAGAATCAGAGGATAAAAAAGAAGAAAACAATACATCATCAAGATTAAATGTTTTAGAACATGTTAGTTCAGTTTCTGAAGATATTGGCGCAGTTGAAATGAAGAAACTTGAGAATAAACTCGATTCCTCGTCAAGCAATTCGAGCGATGATTCAAGTGAAGAAGAATTCATCGAAGATATAGAACTTCCAGTTGAATATAATCCAAAAAAGTGTCGAATTTGTTTAATTACTTTTGGTCAAGAATATGAATTACTTCACCATTTCATAAAAGTACATCCTGATAAAAGGGCCCACAAATGTCCTAACTGTGAAACCGAATATCCTTTGTTTGCGCAACTTAAAGAACATATGAAAACTCATGGAATTGGTATAGGTATTTTTAATTGTGATAACTGCTCGAAAAAATTCAAAAGCGAAAAAAAGATGAGAAGCCATAATATTCGGTGTAAGGGGTTTGATACTAATATAGGTTCAGCTTTTGGTAAAAATAAAATTAGTTCTACCTTTAAAATAGATGATGAAGATAAATGTAAACGATGTGGAAAAAAATTTCAAACGAAATGTGGTTATAAAAGGCATAAGCAATTATGTAAGGAAAAACGCAGATGCAATAAGGAAAACAAAAAGACTGAAAAATTGAAGAAAAATTGTTATGCGAACCCAGTGGAATCAACAGAAATTCAAACAGCGAATAAGGACTTAAAATGTACTACAAATCATAAAACGTACAATGAAAAGTATGATGCTACATCAAAGCAATCGAAAATCGAAAAACCAGATTTAAAAAATAAATCAGAATCTTATGAAGATAAAACCTTTAGCAAAGAAGTTTATGCTGGAGAACCTCCATTGGACAGTTTTGCATGCCGACTCTGTGACAAAAAATTTCAGTATGAGAGAGGAATTGTGATGCATTTCAAATCTGAGCATCAAGGACACAAACCCCTAGTGTGTCATATTTGTAATATGCACTTAGCTGACAAATTGAAAGAACATTTAAAAACCCATGGGATTGGGGAGGAATTTATATGTGAACTCTGCGGCAAACGATTCAATCAAAAGTTCTTGTCCAAAATTCATGAGATGTGGCATGAGGGTATAGAGTACAAATGTAGTAATTGCAACCAAAAATTTCTAAATAAAGATAAAATGGATAAACATATCAATGAGAATAGATGCAGCAATAGACAATCTTTAATGAGATTACCTTGCGATATATGTGGTAAATCTTACAGATCCAAATTCGGATTAAGCAAACATTATATTACTCATACACCAAAAGAGCTGAGACCAATAAAAAATCGTATGAATTGCGAATTTTGTGGAAAATGGTTCGAACATAATAATAGTCTGGAGCGACATCGAAGGATTCATACGGGAGAGAGACCCTTTAATTGTCGTTTTTGTTCAAAGGCATTTGCTCAGGAAGGAAATCGTAAAGCTCACGAAAGGATACACACGGGTGAATCAAGGCCTAGAAAAAAGAAAACTACTGAGAACAATCCAATAACAGTATCAACTAATACCTGTTTTATGACCATATAA
- Protein Sequence
- MNCSKSARKIRLSEFDYKKCRLCNENFLEEEILLQHFSKIHPGENAHQCFCCELCLATFEDLQKHIHMHNTQKFTCSLCGKPYTSQEGFRKHRLKHKGAEFKCQFCDSQFLVENRLKYHEKNCKKNPENGYDFPTTNLISNKKFDRPKQSRQLHWESRIIMTHLRTDPNSEKSKQLSLSNSHKDNILSSNFFDDSDDDVIESNVRGWFDDYYKTEEDDLAFGVRKENSTVSQSQELSVENTQSLKKESEDKKEENNTSSRLNVLEHVSSVSEDIGAVEMKKLENKLDSSSSNSSDDSSEEEFIEDIELPVEYNPKKCRICLITFGQEYELLHHFIKVHPDKRAHKCPNCETEYPLFAQLKEHMKTHGIGIGIFNCDNCSKKFKSEKKMRSHNIRCKGFDTNIGSAFGKNKISSTFKIDDEDKCKRCGKKFQTKCGYKRHKQLCKEKRRCNKENKKTEKLKKNCYANPVESTEIQTANKDLKCTTNHKTYNEKYDATSKQSKIEKPDLKNKSESYEDKTFSKEVYAGEPPLDSFACRLCDKKFQYERGIVMHFKSEHQGHKPLVCHICNMHLADKLKEHLKTHGIGEEFICELCGKRFNQKFLSKIHEMWHEGIEYKCSNCNQKFLNKDKMDKHINENRCSNRQSLMRLPCDICGKSYRSKFGLSKHYITHTPKELRPIKNRMNCEFCGKWFEHNNSLERHRRIHTGERPFNCRFCSKAFAQEGNRKAHERIHTGESRPRKKKTTENNPITVSTNTCFMTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -