Basic Information

Insect: Ricinus arcuatus
Gene Symbol: -
Assembly: GCA_027475445.1
Location: JAOXJT010000004.1:3411001-3414528[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00012 0.026 16.1 2.3 1 23 247 270 247 270 0.96

2 15 5.2 1.1e+03 1.6 0.1 2 11 512 521 511 525 0.84

3 15 8.4e-05 0.018 16.7 3.1 1 23 604 626 604 626 0.98

4 15 0.65 1.4e+02 4.4 0.4 1 23 637 659 637 659 0.86

5 15 3.2e-06 0.00069 21.1 1.5 2 23 673 694 673 694 0.97

6 15 1.6e-05 0.0034 18.9 0.8 3 23 713 733 712 733 0.96

7 15 0.0023 0.5 12.1 0.7 2 23 743 764 742 764 0.95

8 15 5.2 1.1e+03 1.6 2.5 1 20 770 789 770 792 0.91

9 15 0.8 1.7e+02 4.1 0.2 1 21 799 819 799 823 0.88

10 15 0.2 42 6.1 2.6 1 23 830 852 830 852 0.96

11 15 0.0038 0.81 11.5 0.3 2 23 859 880 859 880 0.97

12 15 0.0013 0.28 12.9 5.9 3 23 888 908 887 908 0.99

13 15 0.0011 0.24 13.1 1.9 1 23 914 938 914 938 0.96

14 15 1.1e-05 0.0024 19.4 4.1 1 23 944 966 944 966 0.98

15 15 0.061 13 7.7 3.9 1 23 972 995 972 995 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00012	0.026	16.1	2.3	1	23	247	270	247	270	0.96
2	15	5.2	1.1e+03	1.6	0.1	2	11	512	521	511	525	0.84
3	15	8.4e-05	0.018	16.7	3.1	1	23	604	626	604	626	0.98
4	15	0.65	1.4e+02	4.4	0.4	1	23	637	659	637	659	0.86
5	15	3.2e-06	0.00069	21.1	1.5	2	23	673	694	673	694	0.97
6	15	1.6e-05	0.0034	18.9	0.8	3	23	713	733	712	733	0.96
7	15	0.0023	0.5	12.1	0.7	2	23	743	764	742	764	0.95
8	15	5.2	1.1e+03	1.6	2.5	1	20	770	789	770	792	0.91
9	15	0.8	1.7e+02	4.1	0.2	1	21	799	819	799	823	0.88
10	15	0.2	42	6.1	2.6	1	23	830	852	830	852	0.96
11	15	0.0038	0.81	11.5	0.3	2	23	859	880	859	880	0.97
12	15	0.0013	0.28	12.9	5.9	3	23	888	908	887	908	0.99
13	15	0.0011	0.24	13.1	1.9	1	23	914	938	914	938	0.96
14	15	1.1e-05	0.0024	19.4	4.1	1	23	944	966	944	966	0.98
15	15	0.061	13	7.7	3.9	1	23	972	995	972	995	0.94

Sequence Information

Coding Sequence: ATGATAATGAAGAATTTACATTCAAACATATTGACCGTAAATGATTTTAATGATATTTGTCGCGTTTGTTTGAAAAAAAAAGGAGACATGATAGATATTTTTGCTACTGGCATATACCATCGAATAAAAGAAGTAACAAATGTTGAGATCAGTTCAAGTGATAAACGTGCCAATAAAATGTGTCATGACTGCAGTATACAATTAGAGAACTTTCACAAATTTCAATGTCAAGTCAAAGACTCAGATAATTATTTGAGAACTTTAATGCTGGCAGAAGAAAGTTTTAATAAAGGAAGTGAAGAATTAAATTCTAAAAAACTTAAAAAAGGAAAATTACAAAATGGAAAAGAACTAAGGAATGGAGTAATGAAAAACAGAAATATCAGAAGTTATGCTTCTCAAGTTTTAAACAAAAATTCAGGTGGTGATAAAATGTATTTGATTGTGGTGACTGGATCATCTACCAATTCTGAATCAAAAAATGAAATATGCATAAAGGATTTGGATCAGGAGAATGAAAATGTTGAACTTGCTGATTTTTGTAGAGCTGTGGTTGAAGGGAAGTCATCCAATAATTTTTATAATAGTAAATGTGTTCAGTTGTCTCCAGTTGAGTTCAAAGATATGAATGAGGATAAAAGGGAAGAATTAAAGCATAATCTAGATTTTATTGAAGCCATTACAGACTTCATTAAAAGTGAATCAAAATTAAATGTCTATAAAGTGAGTCTATACATTTATCATTGTAACCAGTGTAAAGAATCATTTGATTCAGTTGATAATCTCAGAAACCATTTATCAAAATTGCATAAAATAAGCAACTCTTGTGTTTCATTTTTTGATCTTAAATATGGTTGTACAGTTTGCTCTATTTGTGAAAGTGATAAAAATATATTTTTAAAACATTTGATTGATCATAAAAAGCAAGGTTTCTCATTTATAAAGGTGAATGCAATTGGGGATTATGTTCCACTGACTGAGCTTGAAAAAGAAGTGTTTGAAATACCAGTGGTGATTGATACATCAAGAATTAAATGTAAAATATTTAAAATTGGTACAAATTGCTATAAATGTATGTATTGCAAAAAATTAATAGAATCTGATAAATTGGTTGTGCATCATTTTAAGCTATGTCATCAAAATTTCAAAACAGATATTTTTTCTTCACATATCAGATTTACTTGTCCAGCCTGTTTAGATTCTTGGATAGATGATGCTGATAATTTTTATAGACATTTGCTTTCCCATAAAAAGGATCATATTTTTTTTATCAAGGTAGATAGTTTAGGCCAAGAAATTGACTTAAGTCCATCTGATTTTATGTTTACACCCTTTGCGAGAGCGTTAGAAACGTTGAAATTTGATTCTGAAAATAGGGAAGAAGGATGCAGCAAATCAGTTGTAAGAACAAAAGTTATTAAAATGCAAGATATCCAGTATTGTGATGTTTGCAACTACGAAGCAAACTCAATAAGTACGATATCATTGCATTATTCCCAGACTCATAATGAAATTTTGAACGTGCAAAATATTTATTGCCCAGTTTGTTCTGAAGAATTCAGACTATCAAAAACTGATGAAAGAGTTAAATTTTATAAACATTTAATGAAACATAAAGAGAGCGGAATTTATTTTTTAAAAATTAAGAGGGACGGGGTTGTGGTGTGTGAAGATTCGAATAGTTCTGAATTGTTTTCGAGTGTAAGTGATTTTTTTAATGGCAAAGTTGATTGTCCTGAACTTGAATTTATCGCCGATTTTTTTGCTCCCGAAATTTTAATTAAACAAATTATAGATATAAAAAATAAATATTTTTGCGATTTGTGTCGTAAAGGTTTTTCTAAGAAGAAGAATCTTTTCGATCATTTAAAATCGCACATGAGAGATGTGAGTAAAGTGCAGAGGGAATATGTATGTGAAAAATGCGGCCGCCAAATACTTGGAATAGGTAATTATAAAAGACATTTTCTAACCCATCGGATAAGATGTGATACTTCAACTGCTCAAAAGCGTCCGGTGTGCTCAATATGTGGCAAAACATTTTCCAACAGAGCAGCGTTAAACGAGCACAAAAGGCATCATCTCAATGAAGGACTGAAAGAAGGAGACTCGACAACGGATTCGCCGGACAAAAACTGCGATGTCTGCGGGAGAAAATTCGCAAGCAATTCAAGTCTTGCAAAACACAAAAAACTACACTCCGGAGACAAGGAAAACACTTTTTTAAAATGCAAAATCTGCGAGCGCGATTTCCGGAAGGAATCCATTCTCAAAAAGCATATTTCCGCCCATCTCAACCCTAACTGCTTCGAATGCGACATATGCAAACTTCCCCTGCTTTCCCTGTCAAGTCTAAGGCATCATAAACTCTGCCATCAGAACAATTCGAACACTTTCGATTGCAAAGTGTGCGAAGTGAGTTTTTTGACGGAAGAGCGATTGATAGCACATCAAGCACACACCGGCCATCATCAGAATCGGAAACGCTTTGAATGTAACGTTTGCCACGAGAAGTTTTTCGTCGGAAGAAGATTTATGCAGCACATAAAACTACATCCGAAATATAAAATGGGAGAATGCTCCGTTTGCGGAAAACGTTTGGCCACAATGCAGTCCCTTATGTTGCATTTGAGCCGTCATTTTAAGTCCAACAGCATTCTGTGCCCTCACTGCGGCAAACATTTTTACGAGGAGCGAAATTACCATCGGCATTTGCTCACTCACGTGGGCCTCAAGCCATTTCCATGCGATATTAAAGATTGTACGAAAGCATTTTATACTTTCTTCGAATTAAACAGGCATAAAAAGTACCATAACAACACGAGGAACTTTAATTGTTCATATTGCCCGaaaagtttccacgaggcgaaccacttgaaggtacacattaggactcataccggtgaaaagccatacatttgTCCTCACTGCAAAAGAGGTTTTGTCACAAGAACGAGGTGTAAGCAGCACATAAACCTGATCCATCAAGGAGTTGGATGCGATTTAATACAGAGCAGCATCTCGAAAGTGGTAGAGGTGTTTGAAGCTACTGAGTCGCAGTAA
Protein Sequence: MIMKNLHSNILTVNDFNDICRVCLKKKGDMIDIFATGIYHRIKEVTNVEISSSDKRANKMCHDCSIQLENFHKFQCQVKDSDNYLRTLMLAEESFNKGSEELNSKKLKKGKLQNGKELRNGVMKNRNIRSYASQVLNKNSGGDKMYLIVVTGSSTNSESKNEICIKDLDQENENVELADFCRAVVEGKSSNNFYNSKCVQLSPVEFKDMNEDKREELKHNLDFIEAITDFIKSESKLNVYKVSLYIYHCNQCKESFDSVDNLRNHLSKLHKISNSCVSFFDLKYGCTVCSICESDKNIFLKHLIDHKKQGFSFIKVNAIGDYVPLTELEKEVFEIPVVIDTSRIKCKIFKIGTNCYKCMYCKKLIESDKLVVHHFKLCHQNFKTDIFSSHIRFTCPACLDSWIDDADNFYRHLLSHKKDHIFFIKVDSLGQEIDLSPSDFMFTPFARALETLKFDSENREEGCSKSVVRTKVIKMQDIQYCDVCNYEANSISTISLHYSQTHNEILNVQNIYCPVCSEEFRLSKTDERVKFYKHLMKHKESGIYFLKIKRDGVVVCEDSNSSELFSSVSDFFNGKVDCPELEFIADFFAPEILIKQIIDIKNKYFCDLCRKGFSKKKNLFDHLKSHMRDVSKVQREYVCEKCGRQILGIGNYKRHFLTHRIRCDTSTAQKRPVCSICGKTFSNRAALNEHKRHHLNEGLKEGDSTTDSPDKNCDVCGRKFASNSSLAKHKKLHSGDKENTFLKCKICERDFRKESILKKHISAHLNPNCFECDICKLPLLSLSSLRHHKLCHQNNSNTFDCKVCEVSFLTEERLIAHQAHTGHHQNRKRFECNVCHEKFFVGRRFMQHIKLHPKYKMGECSVCGKRLATMQSLMLHLSRHFKSNSILCPHCGKHFYEERNYHRHLLTHVGLKPFPCDIKDCTKAFYTFFELNRHKKYHNNTRNFNCSYCPKSFHEANHLKVHIRTHTGEKPYICPHCKRGFVTRTRCKQHINLIHQGVGCDLIQSSISKVVEVFEATESQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -