Basic Information

Insect: Ricinus arcuatus
Gene Symbol: -
Assembly: GCA_027475445.1
Location: JAOXJT010005127.1:77676-79234[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00077 0.16 13.6 1.2 2 23 17 38 16 38 0.96

2 8 3.3e-05 0.007 17.9 0.9 1 23 73 95 73 95 0.97

3 8 0.00033 0.071 14.8 0.4 2 23 184 206 183 206 0.93

4 8 3.9e-05 0.0083 17.7 0.7 1 23 213 235 213 235 0.98

5 8 3.5e-05 0.0075 17.8 7.3 2 23 241 263 240 263 0.95

6 8 0.04 8.6 8.2 3.1 1 23 269 292 269 292 0.88

7 8 0.0002 0.044 15.4 2.8 2 23 298 319 297 319 0.97

8 8 1e-05 0.0021 19.6 4.0 1 23 324 347 324 347 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00077	0.16	13.6	1.2	2	23	17	38	16	38	0.96
2	8	3.3e-05	0.007	17.9	0.9	1	23	73	95	73	95	0.97
3	8	0.00033	0.071	14.8	0.4	2	23	184	206	183	206	0.93
4	8	3.9e-05	0.0083	17.7	0.7	1	23	213	235	213	235	0.98
5	8	3.5e-05	0.0075	17.8	7.3	2	23	241	263	240	263	0.95
6	8	0.04	8.6	8.2	3.1	1	23	269	292	269	292	0.88
7	8	0.0002	0.044	15.4	2.8	2	23	298	319	297	319	0.97
8	8	1e-05	0.0021	19.6	4.0	1	23	324	347	324	347	0.97

Sequence Information

Coding Sequence: ATGAATGATTCGCTTTTCAACAAGAAAAAAAAAGAATCCTGCAGAATAAAATGCGCAAATTGTAGTCAACGATTCAAAACCGAAAACGATTTAAAGGTTCATTTTTCAAGCCACCCAAAAACAGAAGGATGCCTCTGCGAATTTTGCGGGGACTTGTTCGGGGATTTTTCCTCATATGAATTTCATATATTCAAAATTCATTGCCCCGAATTAGATTTCATATGCGAAAAATGTTTTCAGTCCTATTCTTCCTTCGAAGAATTGGAGAGACATCTGAAAATCCATTCGGAAAATATTTGCCAGCAGGAGTTTATTGTGAACAACAGCCGTGAAGATCTTTCTACCACAGTCGTGGAAGAGCCACTCATTCTTTCTTCAGCAGTTGAAAAATCAAATAAAAAATCTCATTCTGATAAATTTTCCATGGAAAAAAGTCAAAAGAAAGGGGAATTTAAAAGTCAGGATTTGAATAAGGTATCGCAAAAAGATGGAAACTCGATGGTCGACGAGGAGCAAAAAAAGGGAAAATCATCGAAACCGATCTCCGTTCCTTGCGAAAATTGCGGTCGACTCTTTGAAAAAGAGAAGTCGCTTAAAAAGCACATCAGTTTGAAGCATTCGGATAAAGTGAAAAGATTCCAATGCGACATTTGCGAGAAGTCATTTTTGGAAAGAGGTAAACTGAACAGGCACCTGAAGATTCATCAAACGGGGGACTTAAAATGTTCGCATTGCAGTAGAACTTTTTGTCGCATGGACAATCTCAAACGCCATACCAGATTGAGCCACGGGAACGCGCAACCGTTTGAGTGCAAATTTTGCAGGAAAAAATTTTCTCTGAAGCACAACAGAGACGCGCACGAGGAAAACATTCACGACGGAATGATAATCCAGTGCGAGTTGTGCGGACAAAAGTGCAAGAATAAGGGAACCTTTCGGATACATCGAAAGATACATGAAGGAAATATTTTTTCTTGTACCCTGTGCTCGAAAACATTCACAAGGAAAGAGCAGTATCGAAATCATTGGAAAAGCAAACACAAGGGATTTTCTCCATTTCAGAAACTTTTCGATTCATTTGTCAAACGAGATCTGGATGCCGTGGCTGATGTTACAAGCTGA
Protein Sequence: MNDSLFNKKKKESCRIKCANCSQRFKTENDLKVHFSSHPKTEGCLCEFCGDLFGDFSSYEFHIFKIHCPELDFICEKCFQSYSSFEELERHLKIHSENICQQEFIVNNSREDLSTTVVEEPLILSSAVEKSNKKSHSDKFSMEKSQKKGEFKSQDLNKVSQKDGNSMVDEEQKKGKSSKPISVPCENCGRLFEKEKSLKKHISLKHSDKVKRFQCDICEKSFLERGKLNRHLKIHQTGDLKCSHCSRTFCRMDNLKRHTRLSHGNAQPFECKFCRKKFSLKHNRDAHEENIHDGMIIQCELCGQKCKNKGTFRIHRKIHEGNIFSCTLCSKTFTRKEQYRNHWKSKHKGFSPFQKLFDSFVKRDLDAVADVTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -