Basic Information

Insect: Ricinus arcuatus
Gene Symbol: -
Assembly: GCA_027475445.1
Location: JAOXJT010003231.1:25980-30819[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.00015 0.032 15.9 2.4 2 23 345 366 344 367 0.94

2 8 0.00069 0.15 13.8 1.1 2 23 373 395 372 395 0.95

3 8 0.00077 0.16 13.6 0.5 2 23 402 423 401 423 0.96

4 8 9.6e-06 0.0021 19.6 2.5 1 23 429 451 429 452 0.96

5 8 1.9e-05 0.004 18.7 1.6 1 23 459 481 459 481 0.98

6 8 2.9e-05 0.0062 18.1 0.9 1 23 487 510 487 510 0.97

7 8 0.00013 0.029 16.0 4.0 1 23 516 539 516 539 0.94

8 8 0.088 19 7.2 1.6 2 20 547 565 547 567 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.00015	0.032	15.9	2.4	2	23	345	366	344	367	0.94
2	8	0.00069	0.15	13.8	1.1	2	23	373	395	372	395	0.95
3	8	0.00077	0.16	13.6	0.5	2	23	402	423	401	423	0.96
4	8	9.6e-06	0.0021	19.6	2.5	1	23	429	451	429	452	0.96
5	8	1.9e-05	0.004	18.7	1.6	1	23	459	481	459	481	0.98
6	8	2.9e-05	0.0062	18.1	0.9	1	23	487	510	487	510	0.97
7	8	0.00013	0.029	16.0	4.0	1	23	516	539	516	539	0.94
8	8	0.088	19	7.2	1.6	2	20	547	565	547	567	0.92

Sequence Information

Coding Sequence: ATGGAAATAAGAGGAAGCGCTTTAAATCTAAATAAAGTGTGCAGATTGTGTCTCTCCGAAGAGACGGTTATGTCATCTATATATAGTGAGACGGATAACCTTTCGAATTCGGTACCACTTCCTCTTAGAATAATGGCATGTGTTTCTATAGAAATTTCTTCAACCGATGGACTCCCTAGTCATATTTGTGCTACATGTTTGTGCCAAGTTGATGGATGGTATAAATTTAAAGATCTCTGTGAAAATGCAGATTCCATTCTTAGGAAATTTGTAAATAACGAACCTGTACAAGTTGAAGCTATTTCTCATATACATAGTATGGCTCAGGAAGTTAAAAAATACTTTTCTTTTTCACAAAATGTTAAAGAAGAGAATAACGGTACATTACAAGCTCAATCTGAAGTTCTTGGCTCCAAAAAGAAAATAAAAACAGTTGAAAACACGAATGGAGAAGCAATTGGACTTTATTCATTGCCAAAGTATGGAACAAGAAGTACTTCATCTCAGGTATCAAAAATTAAAGAAGAAAATGCCGAAGACTATTCATGGGAGAATGAAAAAGAGGAAGAAACTCAAGATTTTAAGCTGCACTTTTCAACCGAGAATCAGGAAAACAGAATTCAGAATTCAAATGATTTTGGTGGTTCATTAGACAATGAAACATTAGAAACCAGAATAACCACTGATTCAGATGACTGCGATTTTAAAGATAACTATTCATCCGATGACAACTTAACACTTTTAGCAAAAAAGAAAAAATTGTTAAAAGAAAAAAATAAAATTAAACAAAAAAAGAAAATTTCAACACAAAAGGATACATTTCCGGATGTAAAGCAAGCCAGAACAATACAGACTCAAACTGGCATCGATGACGATTTGATATTAGAAGTAATAGAAACTAATGTTGAAAATGGATTGGATGATAAAGTAGTTACTCCAGATAAAAAAAAAATTAAAAGCAGAAAAACTCAGACGCCGAAGGAGAAATCAACACCCAAAAAGAGATTTCGAATTCGGCCTGCCATACCTAGTTCATGTACTTTATGTGATAAGGTGTATAAAAATAGTGAGATTCTTAGACAACATATGAAAAGTCATCACGTAACTGGTACTATAGAATGTCCGAATTGCAAATTGACGTTTAACTCCTTGAGAAGTTTGAAATATCATGAACAACGAAAACATAGCAACTTAGAACCGGTACCTTGTACTTTTTGCGGGAAAAAGTTCTTGGATAAAAAGTATCTACGAATTCACGAAAATATCCACAGTCAAGCGAATCAATATGTTTGTCAGTTTTGCGGACGAAAATTTATTATGAAAACTAATTTAACAGTGCATATTAGCAGACATCATACTCTTAAAACGAATGATTTCATTTGTCAAGTATGCGGTAAAGCATTTCCTTTTAAACTGTACTTAAAAAAACATTTCAAAACTCATACTGATTATAAACCATACCAATGTAACTATTGTGAAGCAAAATTTCGGGAAAATACTTTATTGAGAAAGCATGTCAATAGTATCCATTTAAAGTTAAGACCATTTTTGTGTCAGTTTTGCCATAAGACATTCACTAGGAGCCTTTATCTTAGGGAACACATGGAATCTCAACATTTAGGTATTCATAAAAAAAATGAATGTTCACGCTGTGGTGAAAATTTTCAAAATCGAAATCGTTTGAGACAGCACGAATGTGAAGGCAATTTAGAAGTTTTATAA
Protein Sequence: MEIRGSALNLNKVCRLCLSEETVMSSIYSETDNLSNSVPLPLRIMACVSIEISSTDGLPSHICATCLCQVDGWYKFKDLCENADSILRKFVNNEPVQVEAISHIHSMAQEVKKYFSFSQNVKEENNGTLQAQSEVLGSKKKIKTVENTNGEAIGLYSLPKYGTRSTSSQVSKIKEENAEDYSWENEKEEETQDFKLHFSTENQENRIQNSNDFGGSLDNETLETRITTDSDDCDFKDNYSSDDNLTLLAKKKKLLKEKNKIKQKKKISTQKDTFPDVKQARTIQTQTGIDDDLILEVIETNVENGLDDKVVTPDKKKIKSRKTQTPKEKSTPKKRFRIRPAIPSSCTLCDKVYKNSEILRQHMKSHHVTGTIECPNCKLTFNSLRSLKYHEQRKHSNLEPVPCTFCGKKFLDKKYLRIHENIHSQANQYVCQFCGRKFIMKTNLTVHISRHHTLKTNDFICQVCGKAFPFKLYLKKHFKTHTDYKPYQCNYCEAKFRENTLLRKHVNSIHLKLRPFLCQFCHKTFTRSLYLREHMESQHLGIHKKNECSRCGENFQNRNRLRQHECEGNLEVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -