Rarc041933.1
Basic Information
- Insect
- Ricinus arcuatus
- Gene Symbol
- -
- Assembly
- GCA_027475445.1
- Location
- JAOXJT010000013.1:2594323-2597631[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.78 1.7e+02 4.2 1.2 2 17 287 302 286 306 0.86 2 13 0.053 11 7.9 0.3 2 20 372 390 371 392 0.92 3 13 0.0027 0.57 11.9 1.1 2 23 404 425 403 425 0.97 4 13 0.00022 0.047 15.4 1.8 2 23 439 460 438 460 0.97 5 13 0.00089 0.19 13.4 1.1 1 23 473 495 473 495 0.97 6 13 0.00088 0.19 13.4 0.6 2 22 540 560 539 562 0.88 7 13 0.00031 0.067 14.9 1.5 1 23 568 590 568 590 0.98 8 13 5.8e-05 0.012 17.2 0.5 2 23 609 630 609 630 0.98 9 13 0.00049 0.1 14.3 1.1 1 23 664 687 664 687 0.95 10 13 0.011 2.3 10.0 0.8 2 23 777 798 776 798 0.95 11 13 0.099 21 7.0 3.4 2 23 818 839 817 839 0.94 12 13 0.00012 0.025 16.2 0.5 2 21 848 867 847 868 0.93 13 13 0.083 18 7.2 2.0 2 19 873 890 872 893 0.93
Sequence Information
- Coding Sequence
- ATGAGTAAGCTGCGAGAAACAGATATAACCTTCAAATGGACAAATTGCTGTCGCCTATGTCTTTCACAAGAAAATACTATCGATTTATTTTCAGAAGCAAGCATTTCTCAACGTTTTCCCACAAAAATACGGAGTTGTCTCAATTTTCTACTTTATTCTGGAGATCCAATGCCAAGAAAGATATGTTCATCATGTTGTGATAAATTAAACAATTGGTGTCAGTTTCGAAAAGAATGTATTCAAACTGAAAAAGATTTGAAAAGAAGGTTAGAGCCTTATAAAAGAATTTCTTTTGTAAAGGAGTATTTTGATAAATATATGAAATATGAAAAATCATCTCAGGATGGTAGTATCAGTTTTGAGTCCATGTCTGAATATGAAGAAGATGATGTTGATAATGTAGAAATATACTCAGATTATTTGCAGAGGGAGGATGAAAATAGTGGATTAAGTGAATCAGATAAAGCAATGAGACTACCTTGTTATCCCAATTTTAATAAGAAAATTTACCTATCCAAATTAAATGATAGTGATTATATTAGCAATGCAGTTAATAATTCAGATGTTAATGTAAAAGAAAAGGAAACAAATGAAACTATGAAGAGTACAAATAATTTATTTAAAGTTAATATAAAAAATAAGGCACAGGAAAGGGAGAAATTGGCTGTAGAGCCTTGGAAAAAACACCAAAGTTTAAAGGATTATAGATCATCAAATGCAGAAATTGGGGTTCAAGATTCTATTTTTGAAAATGTATCTGAAGTAAAATCATTTGAATCAAGAAAAATAGGAGACAATGAAGAAAATAAAAATTCTTCAGAAGAACAAAACACATCCATGGTAGATCCATCAGTGAAAACTTGTCCAGAATGTGGAATTGATTTTCCAAGTGAAGAATATTTTACATTTCATAGTTGTATTGGAATTGAGAGTGACGTTGAGTCAGATGATAACGAAAATTTTATTAATCCATTAAGTCTGGTAGACATATCTTTGTCAGAACCGAATAAGGAAGCTTCTGAAGCAGATTGTGATTTCTCAAATTTAGGCTCTCATTCTCCATATAAAGCTGAAAAGAATGAGCAAAAGAAAAAAGTTTCAGCACCACCATGGAAATGCCTAGTTTGTAATGAACACTTTAAGACAATCATAGGTCTAAAAGAACATTATAGTTCTACTAGTGAGTGCTCTACTACGGATATCGTAATGGAATGCGAGTTTTGCAGGAAAAAATTTATAAAAAAGAATGAATTTTTAGATCACCAATTAGTTCATCTCAAATATAATGTAGATGTAAAGTCCAATTTTCCAGTGAAATGTAATAAGTGTGATCTTCAGTTCGATGATGAAACAGAGTTAAAACAACATATATGTAGTCACGATCAAGCAGAGATTGTAAAAGAAATAAGGGGAGAATTTTCTTGTTCAAAATGCGAGCTTACATTTTTTGATAAAGAATTGTTTGAAAAGCATGAATTGGTTCATAATCAGCAAGATCTTTATAATACAATAATAACGCCGCAATTTAAAACGTTTGAAGGCATAGAGGCAGTCGATGATATGCTGGAAGAAAATGAGCAATTTGAAGAAGAATGTAGAAAACCCCAGAATGTTGTTCGGTGCTTCAGATGTGGAAAAATATTCAACAGTTCAGAAGAACTGGAACAGCATGAGTTCTTAAAACACAAAAATCCCACACCATATTTCTGCCGCAAATGTGATCTTAGATTCTCTGCCAGATCCCAGCTCTTAATGCATGTTAGAAGTCACATGAGAAAAAGTAATTCCAATAATATTGCAAATTCCGGAGGTAATTCAGATAATACCTGTTCGATATGTAATGCGAAATTTTTTCTAGCTTCGGATTTGCAATCTCATATGAGGATGCATAAATATTCTCCAACAGAAGAGTTACCTCCGTCTTTCGCGCAAAAATCATGGCAGGGTCCGGATCTTTATGGAGATAACAAAATAGATTTATTTGCTAAATTTAAATGTAACGTTTGTTCAAAGATATTTGTTCATTCAGGTAGTATAATCAGACACGGTAAAAATCTTCACAAAGGTCAAGCAGTTTATCCGGTAAGACTGAAACGTCCAATATTTCTTATGAAGAGAGCGAGATCCTTGTCTCTGCCGCCGGAGAAAAACTTCAAAAATTCTCAGGCAACCAAAGTACCGGGCTGCAATAGTGCCGCGGTAATTAACGCAGATGCCAATTCGCATCAGTTAGAAGATAATTGCGACATGGAAGTTAGTCAAGAGGGAAAATGGGAACAAGATCCAGAATTCATGAAAACAGATCCCAATCTGGAATTCGGTACTCAGAAATGTCCATTTTGCGAGAAAGTCTTCAAACCAACATATTTGCCGCGACACATCAAAAGAAATCATAGGGGAGAGGTTCTGGATCCTCAAATGTTGGGCAAGGAAATACCGGATGATTCTCTCATCTGTCGTTACTGCCTTAAAAGCTGTTCAAATCCACATAATCGGAGAGTGCACGAATCAATTCATTACCCCGTTAAAATGCAATGTACTCAGTGCAAAATATGCGGCCAGAAGTTTTATAACAAATCATCTTATGAAGTTCACACTTTAAGTTGCAAGTCAGTTCGTTGCGCGAAATGCAATAAGATATTTTTCAGATATTTATCTTTAAAAAATCATTCTTGTTTAGTTGCCGTGCAAAATCAGAATAAAGCATGA
- Protein Sequence
- MSKLRETDITFKWTNCCRLCLSQENTIDLFSEASISQRFPTKIRSCLNFLLYSGDPMPRKICSSCCDKLNNWCQFRKECIQTEKDLKRRLEPYKRISFVKEYFDKYMKYEKSSQDGSISFESMSEYEEDDVDNVEIYSDYLQREDENSGLSESDKAMRLPCYPNFNKKIYLSKLNDSDYISNAVNNSDVNVKEKETNETMKSTNNLFKVNIKNKAQEREKLAVEPWKKHQSLKDYRSSNAEIGVQDSIFENVSEVKSFESRKIGDNEENKNSSEEQNTSMVDPSVKTCPECGIDFPSEEYFTFHSCIGIESDVESDDNENFINPLSLVDISLSEPNKEASEADCDFSNLGSHSPYKAEKNEQKKKVSAPPWKCLVCNEHFKTIIGLKEHYSSTSECSTTDIVMECEFCRKKFIKKNEFLDHQLVHLKYNVDVKSNFPVKCNKCDLQFDDETELKQHICSHDQAEIVKEIRGEFSCSKCELTFFDKELFEKHELVHNQQDLYNTIITPQFKTFEGIEAVDDMLEENEQFEEECRKPQNVVRCFRCGKIFNSSEELEQHEFLKHKNPTPYFCRKCDLRFSARSQLLMHVRSHMRKSNSNNIANSGGNSDNTCSICNAKFFLASDLQSHMRMHKYSPTEELPPSFAQKSWQGPDLYGDNKIDLFAKFKCNVCSKIFVHSGSIIRHGKNLHKGQAVYPVRLKRPIFLMKRARSLSLPPEKNFKNSQATKVPGCNSAAVINADANSHQLEDNCDMEVSQEGKWEQDPEFMKTDPNLEFGTQKCPFCEKVFKPTYLPRHIKRNHRGEVLDPQMLGKEIPDDSLICRYCLKSCSNPHNRRVHESIHYPVKMQCTQCKICGQKFYNKSSYEVHTLSCKSVRCAKCNKIFFRYLSLKNHSCLVAVQNQNKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -