Rarc026949.1
Basic Information
- Insect
- Ricinus arcuatus
- Gene Symbol
- zfh1
- Assembly
- GCA_027475445.1
- Location
- JAOXJT010000005.1:4404353-4411738[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.004 0.86 11.4 0.2 2 23 80 102 79 102 0.96 2 9 0.0012 0.25 13.0 3.1 1 23 131 153 131 153 0.94 3 9 5e-05 0.011 17.4 0.6 2 23 160 181 159 181 0.97 4 9 8e-07 0.00017 23.0 4.6 1 23 190 212 190 212 0.99 5 9 7.6e-05 0.016 16.8 0.9 1 21 218 238 218 239 0.95 6 9 0.071 15 7.4 1.2 2 14 484 496 483 504 0.78 7 9 2.8e-05 0.0061 18.1 0.9 1 23 958 980 958 980 0.94 8 9 0.00042 0.09 14.5 9.7 1 23 986 1008 986 1008 0.98 9 9 0.0022 0.47 12.2 3.5 1 21 1014 1034 1014 1035 0.96
Sequence Information
- Coding Sequence
- ATGCGCGAGCCGGGGAAGCAACCGATGCGTGCGGGTTTCCCTTCCGGTGCTCTTTGGCGCGGCAGTTTGTGGCGGGGCAAACTTCGGGCGCTGCACTGGGCGGGAACCGTCCCGACGGCAGGTTCCCTCGCTGCCGCCCTTACCCGACGAGATGTTCGCAATTCTCTTTTTCCTCTGTCTCCGGCTGCCGTAAAGGCGCTGGCCGAGGCCGACATCAACAGCCAGGAGTACTTCATAAAATGCCTGCATTGCCAGAAAGCGTATCCCGGACTCCAGGCTCTTAGGGACCACATCGAGACCGAACATCCCAGGAGCCTGTCCCCGAACGAGGCCCTCTCCCCGGTGCAGGGCTCGTACTCTCCGGCCCCGGTGCCGGTCCAGGGGGGCCTCCATCACTGTGCTCAATGCAGCGTCACCTTCTCCACGAAGGACCAGCTGGAAAAGCATGAATTGCTCCATTCTCCGAATGCTCAAGTGTCTTGTAAAGTGTGCAACAAGCAATTTGCCAACGTGTACCGCCTGCAACGGCACATGATCTCACACGACGAATCGGCCGTTTTGAGGAAGTTCAAGTGCCCGGAGTGCGAGAAAGCTTTCAAGTTCAAGCATCACTTGAAGGAACACATCCGCATCCACAGCGGCGAGAAACCTTTCGAATGCGCGAATTGCGGGAAAAGGTTCTCCCATTCCGGGTCTTATTCCAGTCACATGACGTCGAAAAAATGTCTCGTAATGAACCTGAAAGTAAATCGCGGTAGAGGAGGTATCGGAATTGACAAAGCCCAAATGAACAGAAACATCGGCGGAGGAGCCAAGAGGAACGTCAACAACAACGTCAACAGCTTGAAGGGAAACCTCAATCTCGGCTCCAACATCGCGGCAAATCCTCCCTTCCCTTCGATATTGCCGAAATACAGCGACACGGCAGCGGCTTTTCTGTCGGCCGTCGCTCCCCGCTCCACCTTCGCCTCGCCATCCGCCCCGGGCCTGCATCCTTTCTACATGGCCACGCCTCCCACGATGCACGCATACAACATCCCCGCTCTGAATCACTTTCTGGAGCAGTTCGCCACGCCGTCTGGCATGCTGATGAACACGAGAAAGGAGCGGGACGAGTACAAGGACGAAAGCAACGAGGAACCCTCAAAGGGATCGGCGGTGAAGGAGGAACCGGAGTCGAAGCAGGAACCGGAAGACGTGAAGAGCGAGCCGATCAAGGAGGAAAAGTCCGAGGACGAGAAGGAGGCAAAGGACAGAAGCTCTCCCGTGAGCAATTCGGGAGGCGATTTGGAAGCGGTGAAGAGAATATTGGAAACCGTTAACGCCACGGTGACGAAGCAGTTCCTGCAGGCGAACATGCAGAAATTTACGTCTTCTCCGTCGGGAAGCAGCTGCGCGAGCGCGCCCTCGCCTGGACCGGAAGAAAAGTCGAAGAAGGGGGAAAACATAGAATGCAAGCACTGCGGGAAAATGTTTCAGAGCAGAATCGATCACCATCAGCACGAGAGATATTTGTGCGAGACGCTGCAGAAGAGCGAGGGCCTCGCCGCGAAACTGGAAGACGTCGCCACCGTGAAGAGAGAGGAAAGCGTGTGCAGCGGAAGCGAGGACGAAGACGCCAAAGAAGGGGAGGAGGAGATCGAGCGCAACGAGGACGGCGGCATAACCATAACGACGACGACTCAAGAAAGCGGCGCCGACGGCCGGAAGGTGAGGGTCCGGTCCCTGATTGCGGACGAGCAGTTGGCCATCCTGAAGCATCACTACCTGATGAATCCGCGACCGAAGCGGGAGGAACTGGCGAAAATCGCAGACAAGATCGGATTTCCGGTTCGGGTGGTCCAAGTGTGGTTCCAGAACACGAGAGCTCGAGACCGCCGAGAAGGGAGATTGGTGCAGGTTCCGTATTTGCCGCTGCCAGCGTTATTTCCGAACAATGTGCCTTTGCTGCATTCGACCCTTCCGGAGCAGCCTTTGGATCTGTCTACGAAAAAGTCCCAGGATTCCTCGCCCGAGTCGTCTCCGCCGAGATGCTCCAACGACTCGGACGTGATCAACCTTTCCCGCAAATCGAGCAGCCCCAGCCCTCCCCAGATCTTCCCCAACGGGTTGACCATCAGGGCCATGCCCAACTTGCCGCAGTTCCAACATTCCTCGTGTCCCTCGTCCACGCTTGCCGATTTCCGGCGAACGCCTTCGCCACTGGCGTACCTGAACCTGCATCAAGAGGATTTGAAGAACAACGGGTCTAGACTCGCGAGGATTTTGACGCAGCCGCCGTCTCTCACCCAGAGACTGGACGCAAACGGGGTGACTCTGGTGCCGATGGAGAAGATCGTCTTCAACCAGGAACTTCAGAACTCCGCTTCGCCGCTTCCGATGATGGCCCTGTCTCTCCTGCAGGAGAACGGACGCGCCTGCAGCTCAAGTCCGGGATCCGATAAGCGTCCATGGGTGGAGGTAAAAAAGCATGATACTTTATGGGTGGCGGGGCTTCTGCTTGACTTTTTACCCTGGTTAAGGTGCTCTTCAAAAATGTGTTCCTCACAGTCAGAACGGGTGGTTGCGGTCACGACAAAGCGGCAATCTCAGATCAGGTTTGGCCGTCCTTTGCGTAGAAGCACGCACGGTGCGCAAGCTATCCGGAATTTAGGGAAATTACCTCCATTAACGGGCGCAACTCACTTCCGCCACTTGGCGCAGATAAATCACTACATACAGCGCAAACGAACGTTTCAGGGGGATTTGACTGACGAGACGGAGGATTCGAGACCGCGCGACGCGGAGCAGGGCGAGTTCGCATTCCGGGTGAAGCAGCAGAAGGTGAGCGTGGCCGCGGACCCGCAGTCGGACCAGGAGCTGGAAGGACAGTTCATctgcgatcagtgcgagaaggcgttctcgaagcagagctccctggcacggcacaagtacgagcactccggtcagagaccgcacaagtgcgaggtgtgcgagaaggcgttcaagcacaagcatcatctgacggagcacaagagactgcacagcggggaaaagccgtttcagtgcgggaagtgcctgaagcgcttctcgcactcgggctcctacagccagcacatgaaCCACCGCTACTCCTATTGCAAGCCGTACAGAGATTAG
- Protein Sequence
- MREPGKQPMRAGFPSGALWRGSLWRGKLRALHWAGTVPTAGSLAAALTRRDVRNSLFPLSPAAVKALAEADINSQEYFIKCLHCQKAYPGLQALRDHIETEHPRSLSPNEALSPVQGSYSPAPVPVQGGLHHCAQCSVTFSTKDQLEKHELLHSPNAQVSCKVCNKQFANVYRLQRHMISHDESAVLRKFKCPECEKAFKFKHHLKEHIRIHSGEKPFECANCGKRFSHSGSYSSHMTSKKCLVMNLKVNRGRGGIGIDKAQMNRNIGGGAKRNVNNNVNSLKGNLNLGSNIAANPPFPSILPKYSDTAAAFLSAVAPRSTFASPSAPGLHPFYMATPPTMHAYNIPALNHFLEQFATPSGMLMNTRKERDEYKDESNEEPSKGSAVKEEPESKQEPEDVKSEPIKEEKSEDEKEAKDRSSPVSNSGGDLEAVKRILETVNATVTKQFLQANMQKFTSSPSGSSCASAPSPGPEEKSKKGENIECKHCGKMFQSRIDHHQHERYLCETLQKSEGLAAKLEDVATVKREESVCSGSEDEDAKEGEEEIERNEDGGITITTTTQESGADGRKVRVRSLIADEQLAILKHHYLMNPRPKREELAKIADKIGFPVRVVQVWFQNTRARDRREGRLVQVPYLPLPALFPNNVPLLHSTLPEQPLDLSTKKSQDSSPESSPPRCSNDSDVINLSRKSSSPSPPQIFPNGLTIRAMPNLPQFQHSSCPSSTLADFRRTPSPLAYLNLHQEDLKNNGSRLARILTQPPSLTQRLDANGVTLVPMEKIVFNQELQNSASPLPMMALSLLQENGRACSSSPGSDKRPWVEVKKHDTLWVAGLLLDFLPWLRCSSKMCSSQSERVVAVTTKRQSQIRFGRPLRRSTHGAQAIRNLGKLPPLTGATHFRHLAQINHYIQRKRTFQGDLTDETEDSRPRDAEQGEFAFRVKQQKVSVAADPQSDQELEGQFICDQCEKAFSKQSSLARHKYEHSGQRPHKCEVCEKAFKHKHHLTEHKRLHSGEKPFQCGKCLKRFSHSGSYSQHMNHRYSYCKPYRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01308899;
- 90% Identity
- iTF_01308899;
- 80% Identity
- iTF_01307912; iTF_01308580; iTF_01308899;