Rarc031729.1
Basic Information
- Insect
- Ricinus arcuatus
- Gene Symbol
- wek
- Assembly
- GCA_027475445.1
- Location
- JAOXJT010007451.1:16334-19280[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0021 0.45 12.3 0.3 1 23 250 273 250 273 0.96 2 16 0.0069 1.5 10.6 7.7 1 23 286 309 286 309 0.96 3 16 0.021 4.5 9.1 1.3 1 23 333 357 333 357 0.97 4 16 0.011 2.3 10.0 1.4 1 23 372 397 372 397 0.94 5 16 0.63 1.3e+02 4.5 0.3 9 23 510 524 501 525 0.82 6 16 0.015 3.2 9.6 3.8 2 23 555 577 554 577 0.93 7 16 0.049 10 8.0 0.2 2 23 587 611 586 611 0.94 8 16 0.0029 0.62 11.8 1.8 1 23 640 663 640 663 0.97 9 16 2.1e-06 0.00045 21.7 0.3 3 23 674 695 673 695 0.91 10 16 1.3 2.8e+02 3.5 0.4 2 23 701 721 700 721 0.78 11 16 0.00015 0.032 15.9 0.6 1 23 735 757 735 757 0.96 12 16 0.00047 0.1 14.3 0.4 3 23 765 785 763 785 0.95 13 16 2.7e-05 0.0058 18.2 2.4 3 23 795 815 793 815 0.98 14 16 3.6e-05 0.0077 17.8 2.6 1 23 821 843 821 843 0.97 15 16 0.026 5.5 8.8 4.1 1 23 849 871 849 871 0.97 16 16 0.0082 1.7 10.4 3.4 1 23 877 900 877 900 0.93
Sequence Information
- Coding Sequence
- ATGGAGGACGAAGCAAATTTGGATGTTTCTGTGTCCGATAATCAAATTGTAATTGATTTCGGAGACATTTGCCGTTTTTGTTTGGCCGAAACGAATAATACAATATCCATTTATGATAAGTGTTTTACCGAGGACTTCAAAGAGAATGAGTCGTCGATTTTTGATTTTGTTTGTAAAATTACATCCATTAAGATGGACAATTTCGATGGCTTTCCATCTCTTGTGTGTGAAAACTGTTTTAGCATCATAAATATGTGCCTTGAATTTAGGCAAGCCTGTCTGCAGTCGGATTTGTCTCTGAGAGACTGTTATGAAAAGACTCTTGAAGAAGCCAAAGCCAAATTTTCATGTAAAATTGTTAAAGAGGAAGATTCTACAAATGAAAGTACAGCAGTTTCACTTGAACAGGGAATGCAACACAAAAATATTGCAGTAAAAGAGGAGAGCGATTCCATAAAATGTGAAGAGGATGTAGATTTTGAGAAAATTACCACTACTAATTGTTACATGGAAAATGAAAGTGTGAAGTTGAAAGAGAGAAAAAAAAAAGGTTTGTATAAAAATGAATCTTTAAGTATATTAAAAGCTGGTACTATAAAACAAAAGTATCAGAGAATCAATTCATTATCTGAAAGGTTGAAGGAAGCTCAATCAAAGCTGGTTGAAGATATATTAAGAACAAAGGATTTAATTTCAGTTTCTGTGAAGAATGAAAATTCAAAGGATGGATCAGATTACAAAGTGAAATTCTCGTGTCCTCAGTGTGTAGTTAGTTTTGTGAGTTCCGAAATGTTGACCTATCATTTTATAACTAGTCACATTGTTGAACGAAAAACTCAAAGAACAACCCACTGTTTCTGTTGTAAAGTTTGTAGCAAGCAATTTAGTTATATGCATCAATTGATGAGACATTATAAGAACATGCACAAAATACCTATGTCGAAGCTCTCTGCCGAATACTTGTTTCCGAAAAATAATAGTGAAAATGATAAAAGTTATCAGTGCCTTGACTGTAACCCTCCCAAATTGTTCAATAAAAGAAGAAACTTTTTTCGTCATTTGATGGAACATGGAAAAGTCGAGAACGGCTTAGTTAATTCAGATAGAAAAGCTTACGTGTGCAGGAGATGTAATTCCAATCAAACTTTCGCAACTAAATTTAGCCTTAATCGTCATTTGATGAATATTCATAAACTGAACCGAAGTGAGATAAGCGATGAAAGTGCGGACGGATACACTTCAAAATTCGAATGCGGAGATTACGGTAAAACCTTCGGGGACTTGCAGACGGGGTTGAAGCTTTTGAAAATTTACGTTTGCGTCGAATGCACACCCCCGGCTTCGTTCCCGGAAGTTGCACTTTTCATCCAGCACAAAACGGACGCTCACGGAAAAAAGCTCGAAGACATCTCCCTCAAGGAGCTCACCCCCGTATACGTGGAGTCTGTGAACGTTTTCCAAAAAACCGAGAAAGACGAAAGCGAACGGACGTTTAAAGTCGTCTGCAAATCCTGCGAGCCTCCGTCCGAATTTTACTCCGCCAGCGATTTCGTCCAGCACATGAAACTGCATCACGGCGACGTGCCGAACGAGAAATGGGACGTGGAGACGAAGTTCCTCCTGGAGTCGCTTCCGCTGTCGTCGGAGCAGGACCGGCGCTGGAAATGCACGGACTGCCCGGCGTCATACATCAGGAAACACTCTCTCCATTACCATTTCAAGGAGAAGCACAACAAGGTGCTAAGATTGGGCGGAGTAAAATGCCCCGAGCCAGAGTGCAAAGCCTCCTTCTTCACGAATCGACAGGTCATCCATCACGGCATAACGGCCCACAAAAAGTACTTCGCGAACCTGCACAAGGTGTTCAAAGATAAGATACTGCAAAACGGAGCCGAGGCGGATGAACGTGTGAGGAATTTCGAATGCAATATATGCCGGAAAAAATATTTGGGTAAAACATCGCTCAAACGTCACATTCTCAAAACGCATCTCGGGAAAGCGGAAATGGAAAATGCGATATGTCCATATTGCGGAAAGACGTTTTCGAGTAGTTTGAATTTGAAGTCTCACATAGATTTCGTCCACGAGGCACTGTTCGTGCCGTGTCCGATATGCAAGAAAAGCATAAACTTCAAAACAATCGGAAAGCATTACAAAGTGCATCAGTCGAACGCGGAAACGGATCAGGGAGGCGAGAACCGTTATTTGTGCAATCAGTGCGGCAGGGTTTTGAAATCGAAATCCGGTTTCGAGGACCATCAAAAACTCCACTTAAACGTTCGGGATCAGATATGCGACGTGTGCGGAAGCGGTTTCACAACCAAGAAAAACCTGTACATACACAAAAAGGGTCACGACCTGACGCAGAAGAAGGTTTTCGGATGCGACAAGTGCGAAAAGGTTTTCACCGGGAAGCACACGCTCAACAGGCACTTGCTCACTCATTCGGGCGAGAAAAACTTCATATGCGAAATATGCAGCAAGTGCTTTTACACGGTGCAGGAGCTCAACAGGCACGTCAGGTACCACAAGAAGGAGTACCGTTTCGATTGCCAGCTGTGCGACATGAGATTCCTCGACAGATCGAGATTTCGGCACCACATGATGCGACACCGAAACATAAGACCCCACAAGTGTCACTTTTGCGAAAAGGTCTTCATTGTAAGGAGGAAAATGAATCTCCACATGGCCGCCAGGCACAACGTAGAGGTGCAGAACACGAAGGCGATATGGAAGGATCCCAAAACTTACATACCATTAGACGACTTGCTGTAA
- Protein Sequence
- MEDEANLDVSVSDNQIVIDFGDICRFCLAETNNTISIYDKCFTEDFKENESSIFDFVCKITSIKMDNFDGFPSLVCENCFSIINMCLEFRQACLQSDLSLRDCYEKTLEEAKAKFSCKIVKEEDSTNESTAVSLEQGMQHKNIAVKEESDSIKCEEDVDFEKITTTNCYMENESVKLKERKKKGLYKNESLSILKAGTIKQKYQRINSLSERLKEAQSKLVEDILRTKDLISVSVKNENSKDGSDYKVKFSCPQCVVSFVSSEMLTYHFITSHIVERKTQRTTHCFCCKVCSKQFSYMHQLMRHYKNMHKIPMSKLSAEYLFPKNNSENDKSYQCLDCNPPKLFNKRRNFFRHLMEHGKVENGLVNSDRKAYVCRRCNSNQTFATKFSLNRHLMNIHKLNRSEISDESADGYTSKFECGDYGKTFGDLQTGLKLLKIYVCVECTPPASFPEVALFIQHKTDAHGKKLEDISLKELTPVYVESVNVFQKTEKDESERTFKVVCKSCEPPSEFYSASDFVQHMKLHHGDVPNEKWDVETKFLLESLPLSSEQDRRWKCTDCPASYIRKHSLHYHFKEKHNKVLRLGGVKCPEPECKASFFTNRQVIHHGITAHKKYFANLHKVFKDKILQNGAEADERVRNFECNICRKKYLGKTSLKRHILKTHLGKAEMENAICPYCGKTFSSSLNLKSHIDFVHEALFVPCPICKKSINFKTIGKHYKVHQSNAETDQGGENRYLCNQCGRVLKSKSGFEDHQKLHLNVRDQICDVCGSGFTTKKNLYIHKKGHDLTQKKVFGCDKCEKVFTGKHTLNRHLLTHSGEKNFICEICSKCFYTVQELNRHVRYHKKEYRFDCQLCDMRFLDRSRFRHHMMRHRNIRPHKCHFCEKVFIVRRKMNLHMAARHNVEVQNTKAIWKDPKTYIPLDDLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -