Rarc023987.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ricinus arcuatus
Gene Symbol
-
Assembly
GCA_027475445.1
Location
JAOXJT010001663.1:26900-29851[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.0089 1.9 10.3 0.4 1 14 238 251 238 260 0.80
2 11 0.084 18 7.2 1.9 1 23 266 288 266 288 0.96
3 11 0.0004 0.086 14.5 0.3 1 20 382 401 382 404 0.92
4 11 4e-07 8.5e-05 24.0 0.9 1 23 410 432 410 432 0.96
5 11 5.5e-05 0.012 17.2 5.1 1 23 438 460 438 460 0.99
6 11 0.0015 0.33 12.7 1.2 1 23 466 488 466 488 0.98
7 11 1.1e-06 0.00024 22.5 0.4 1 23 494 516 494 516 0.98
8 11 3.3e-06 0.0007 21.1 0.2 3 23 542 562 540 562 0.95
9 11 9.3e-06 0.002 19.7 1.0 1 23 568 590 568 590 0.99
10 11 7.8e-05 0.017 16.8 3.6 1 23 596 618 596 618 0.98
11 11 4.7e-06 0.001 20.6 8.4 1 23 624 646 624 646 0.98

Sequence Information

Coding Sequence
ATGGATTCAAATACATTTCATAAAACTTTTGCCACTGATAGCACAGATTCTTACAATTTTTGTATAAAATATAAATATTTGTGTATAACCTGCAAATCACCTTGCTTGAATTGCACAAGTCAAAAAACTGAGACTTCGACTGATACTTACGATTTTGACAAATATTTAGAATCTCTAAGTAGGAAGTCAAAATACCAACTAAAGGTTAAATCAGTTGGCACCGATACATATGATCTGGACTCACATTTTGACTGCTACAGAACTGAAAGATCATCCTTAATTCAAAAGAGCGTGGCAACCGATTGCTCTGACTTAATCTTTAGAAAACCATCGAGTAGAAAAAAGATTAAGAAGCAGTCGAACGAGTCTTTGAAAGATGGATCCGAAAGGAAGTTTATGCTCGAAAAAGACTGCGAGTTTTCGTGGGATCTGAAGAGGGATTCCAAAACTTATTCACCGTATGAAAAATCGAGTTCATCGGATATCAAAGAAGAAAATTTAGCTTCTGATGAGGTGCTGTTCAAATCTGAAGAAAACAAAGAAAATTACGATGCCCCTAAGAACGGGGAAATCGAAATTGGGTTTGAAAATTCCTCTTCTGATGAATCTGATATTGATTTGATCACCTCCAGTAGAGTTTCAAAATATAGAAAAATTATAAGAACTTACAAAATGACATTAATTCAAGTTGAAGTTGACAAAGAAAAAGTTTTTAGATGTGGTATATGCGGCAAAACATTTCAGAAAAAATATTTGGGTGTTTTGCATTTGGGAAATCACGTGGAAAACGGAAGTTTTAAGTGTTTATGTTGCGAAAACAGTTTTTCATCATTGGAGCTATTGACTTCACATGCTAAGGTACATCGAGGTTTAGGAACTAATAACAGTGATAATATATTAATTGATGAAGAAGAAAGGAGTGGCAGGGAAAATGTCTCCGAAACAAGTATAAAATCTGACACTAACTTTGTCCCGAAGCCGATGGATAAGTTTTTTCAATGCATATTATGTCTAAACGTAAATGATTCACCGATTAGATACCCTTCTTATAAAGCATTGTATTTGCATAAAAGACTGAAACATGGAATAGGTGAAAATAAGAACAGATCTAAGATGGAACGGAAACCACGGTTAaagagagaattcatatgcttgttttgtgggaaggaatttaaaagcaataaagctttaaatgatcatttaccggtgcacaccggtgagaaaaattatctttgtgaaatatgcaataaatcatacacaactagcgcaaatcttcagattcataaaagaacccacatgggattgaaaaacttcaaatgcacgttatgtgataaagctttccacaagaaagacagcctaaaagtccattttcggaagcattctggagagagaccatttcagtgcgatatatgtcccatgaagttcgaccgtaatttcattctaaaaaatcatagactaagacatttctccgagaaaacttacatttgccccgtttgtggaaaaGCTTTCACCACTCATGGTGGTCTAAACAACCACGAGAAGAGCCATAAACGAGATCCGGGTTCTAGAAAACCGAGGAAACCTGCCGTAAAACCGACACTCCAAGCAGAGAACGCGGTCATATGCGATGTCTGCGGCAAAGTATACTCGACCAGAAGCAACTTAAGAATTCATAAATTTGTTCATCTTGGGGTAAAACCTTTTCAGTGTCCCGTATGCCAGCAATCATACGCGAAAAAAGATTCTATGCTGACtcatatgagaaaacatactgatgagcgaccattttcgtgtgagacctgtgggatggctttttacaggaaccacacacttaaaactcatcgcctgcgccacacgggagaacgtcctcacaagtgtcacatgtgcggtaagagctttacgcagtcctcttctttaacttatcacatcaagcaccacaacagaaagGAAGAAAACACAAAAGTTCAACTTCTCGACGATCAGAATAGGATTCAACGTAAGAAGAAATTTCAAGGAGCGAGATCTCTGTCTTTGAAAATGAATGGTTCCCCAAAGTGTGAAGATTCTGAAAGGCCTTCGGAAATCATTGGTGACATGGTCATCATGAATGAAGAAAGCGGACTGAATTATTCCAAAAGCGGCCCGCTAACGATTCCTATGATTAAAAAAGAAGTTTTGGTGATAGAAGAAAATTTAGGTGTAGATACCTTGAAGAAAGACAGTAAGCAGTCAGAAATTTTTGAGGAAGAGAAGGAATGCCTTCAGTTGGACTTGAACAAGTTCAATTATTACATAGCCAAGAACAACCCCGTTTCACTGCCGAAGGATAATCTCAAACAAAAAACATCCTATAAGAAGGGAGAGGAATCTGCTAAGGAAAATCAAATGGGAGAGAATCTGAATCTTTCTAAGGAAAGCTGCGGCGAGAAAGGAGAAAATTTGTTGATGCCAAATCGCGAGCACTGGGCGAAGGGTATCAAAGATTTCGACGAGATGGAAGAACACAGGACGGAGGACAAAACGGAAAACGTACTACCAATTGCTGGTGAAATTTTGAACGCTACTTTTATCAGCGATCAAAACGGTGAAGTAATACCTTTTGGCTCGATGACTCTGCAGGGTGTGAATGCTGAAAACATAGTGATTAGTCCTTTAATAAAAGTGGAAAGCGCGGACGAAGGAGACAAGCGAAAAGGACTCTCACGGAGTTCGAAAATGGGAATGATCGACACAAAGATGAAGTATCTCGGGTCTTCTTTGGGAAAAAATCTGCCCAAACAGAATTGTCAAATTCTTAATTTAAAGGATGCCAGAATGCAACAAAGAATTCAGCTTATCAACTCCGAGCCCTTATCTTTCCAAATCCAGGTACCGGTACCGTGTACCGCCATAGGCGACGACAGCGTATTAAATGGGCTACCATCCAGTGGAACCTACTATAGCAATGTCTGA
Protein Sequence
MDSNTFHKTFATDSTDSYNFCIKYKYLCITCKSPCLNCTSQKTETSTDTYDFDKYLESLSRKSKYQLKVKSVGTDTYDLDSHFDCYRTERSSLIQKSVATDCSDLIFRKPSSRKKIKKQSNESLKDGSERKFMLEKDCEFSWDLKRDSKTYSPYEKSSSSDIKEENLASDEVLFKSEENKENYDAPKNGEIEIGFENSSSDESDIDLITSSRVSKYRKIIRTYKMTLIQVEVDKEKVFRCGICGKTFQKKYLGVLHLGNHVENGSFKCLCCENSFSSLELLTSHAKVHRGLGTNNSDNILIDEEERSGRENVSETSIKSDTNFVPKPMDKFFQCILCLNVNDSPIRYPSYKALYLHKRLKHGIGENKNRSKMERKPRLKREFICLFCGKEFKSNKALNDHLPVHTGEKNYLCEICNKSYTTSANLQIHKRTHMGLKNFKCTLCDKAFHKKDSLKVHFRKHSGERPFQCDICPMKFDRNFILKNHRLRHFSEKTYICPVCGKAFTTHGGLNNHEKSHKRDPGSRKPRKPAVKPTLQAENAVICDVCGKVYSTRSNLRIHKFVHLGVKPFQCPVCQQSYAKKDSMLTHMRKHTDERPFSCETCGMAFYRNHTLKTHRLRHTGERPHKCHMCGKSFTQSSSLTYHIKHHNRKEENTKVQLLDDQNRIQRKKKFQGARSLSLKMNGSPKCEDSERPSEIIGDMVIMNEESGLNYSKSGPLTIPMIKKEVLVIEENLGVDTLKKDSKQSEIFEEEKECLQLDLNKFNYYIAKNNPVSLPKDNLKQKTSYKKGEESAKENQMGENLNLSKESCGEKGENLLMPNREHWAKGIKDFDEMEEHRTEDKTENVLPIAGEILNATFISDQNGEVIPFGSMTLQGVNAENIVISPLIKVESADEGDKRKGLSRSSKMGMIDTKMKYLGSSLGKNLPKQNCQILNLKDARMQQRIQLINSEPLSFQIQVPVPCTAIGDDSVLNGLPSSGTYYSNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01308866;
90% Identity
iTF_01308866;
80% Identity
iTF_01308866;