Rarc020120.1
Basic Information
- Insect
- Ricinus arcuatus
- Gene Symbol
- Zfy2
- Assembly
- GCA_027475445.1
- Location
- JAOXJT010003231.1:32145-35322[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0028 0.6 11.9 1.0 5 21 104 120 103 125 0.91 2 19 0.024 5.2 8.9 0.1 5 21 145 161 143 162 0.92 3 19 0.11 23 6.9 3.7 1 20 187 206 187 208 0.94 4 19 0.0018 0.39 12.4 2.4 1 23 221 244 221 244 0.98 5 19 6.9e-05 0.015 16.9 2.6 1 23 248 271 248 271 0.96 6 19 0.018 3.8 9.4 0.7 1 23 278 300 278 300 0.98 7 19 8.1e-05 0.017 16.7 2.0 1 23 306 329 306 329 0.94 8 19 3.1e-05 0.0066 18.0 0.5 1 23 336 358 336 358 0.96 9 19 5 1.1e+03 1.6 2.7 1 23 364 387 364 387 0.82 10 19 0.029 6.2 8.7 3.1 1 15 394 408 394 411 0.91 11 19 3.8 8.1e+02 2.0 2.7 1 23 500 523 500 523 0.87 12 19 0.012 2.5 9.9 2.5 2 23 528 549 527 549 0.96 13 19 1.1e-05 0.0023 19.5 0.6 1 23 555 577 555 577 0.98 14 19 3.2e-07 6.7e-05 24.3 0.7 2 23 584 605 583 605 0.96 15 19 0.0097 2.1 10.2 2.3 1 23 611 633 611 633 0.97 16 19 5.4e-07 0.00011 23.6 1.7 1 23 639 661 639 661 0.97 17 19 0.00025 0.053 15.2 1.1 1 23 667 690 667 690 0.97 18 19 8.7e-06 0.0019 19.8 0.4 1 23 696 718 696 718 0.99 19 19 0.016 3.4 9.5 3.3 2 20 725 743 724 745 0.93
Sequence Information
- Coding Sequence
- ATGAATAAGGGTGATAGAGCCAGAGGTAATAGTTTTGAACCTGAACTCTCTTTAACCTCATCAGATGTTGAGAATGAAGAGGCAAAAGCCGATATTGGAAAATTAAAAATGAAATCGTCGCCGCGCAAATATCACACTTGTCTGTGTACGAAAAAGTATTTGTCGAAGCACCATTTGGAAATTCATCAAAAGTTTTTATGTTCTAAAATGAGAGATAAAAAAATACGGCTAGAATTAAATGAGTTGAATTCGTCTGATGATGAAACATACATTAAGATGGTGCGCCAAAATCATGCCAACTACATCTGCGGCTGTAACAAAAGGTTCTCTACAAAAGAAATGTTAAAAAACCATAAAATGAAAGGCGATCTGCATGATGATTGGTTGCTAAATGAATTTCAAGACGAAGAAGATAATGTAATGTTTAACTGTGAATGTAAGGAATCTTTCGGAACTAAAGAAGAACTAAAGATCCACATAAGTAAGGGAAAATGCAGAGAATATATGAAAGCAGATGAAAATTATGAATTGAAAAGAGACAATTTGGGTCGCAATGTTTACTTTTGCCTCCTTTGCAAGCAGACCTTTTGCGGAAAAAATTATTTATTGAAGCACAGATCAAATTCGAAATGTAAAACTTTCGGTAAAGCTGATATGCCCTACGAATGCAGTGAGTGCAGAAGATTGTTTGTCAAAAAGAAATATCTTTTGATACATCGAAAAAAGAATCACATTCAAGAATTCAAGTGCGAGCATTGTTCGAAAGTTTTCGCAAACATCACCACATTGAGAAATCACAAGAAATTAGTACACAAGGACGGTTTCACGAAATTCACATGCGAATATTGCGCGATGAAATTTCTGGGATTCTCTGCTCTAGTCAAGCACTTAAGAAAGCATACGAACGAGCGGCCTTTCAGCTGCCACATATGCAAAAAGACTTTCGCTTTGGAACGATCGCTGAAGGCCCATCTAAATTTCGTACATTTCGGGACCGGCAAGAATTTCGTTTGCGACGTCTGTGGATTAACATTTGCAAGAAAGGAGTATTTAGCGAACCATTCTCACGTCCATCAGAATGAGAGGCGGTTTCATTGCGAGTTCTGTGATTCGTCTTTTCGGTGGAATGCTGCTAAGCGGAAGCACTTGTTTCTCAAGCATCAGGACAGGATCAATTTGTACAAATGCAGATATTGCGAGAAAAAATTTAAAACGAGTAGAAATAAACAAACGAAAAGAAAAAAATCGTTACAAAAAAAGGAAGATCGACTGCAAAAAGACGAGGATGAAAGAAAAAGAGGTGAAAATATTAATTCATCTTGGCTTTTAAATGAAAAATTTCCGTTAAACAGTAATCAAGTAAGCGAAGGAGCCGATCAACAGATTCATAGCGAGTTAATAAGTGATGGCGAGGAGAGCACCAAGAAAAGGAAAAGGAAATTGAACTATTTTGATGTTACTTATGACTACCCGGTGCCCACGAAAGACGGAAAAGTCCACCAATGTCGCATATGTCGAAAATATTTGAAAAATGTCACGACGAGAAATCGTCACGAAATAGAGAAGCATCCGCCGCCCTTACCATGCGAATTCTGCCAGAAAACTTTTACCACCGTCTTAACCTACCACACTCATCGAAACATTCATTTGGGATTAACAAAATTCAAATGTCAGTATTGCGGCAAGTATTTGGCTTCCAGGTCAAATTTGGAGGATCATGAAAAAGTTCACACGAAGGAAAGACCAATCGAATGCCCCCAGTGTGATAAAACATTTTCATCCACTTCCAATCTTCGTGTCCACTTAAAGTTTCATGCCGGGGTGAAAACGTATTTTTGCCATGTGTGTGGGAAAGGCCATGTAACAATCGGAAATTTGAAGCTTCATGTTAAAAGGCACTCAAACGAAAGAAGTCATGTATGCCACATCTGTGGTAAAGGATTCAATGGGAAAAGTGAACTGAATAAACATATTGAAAGCCATAATAGCGAAAAAAAATATTCGTGTCAATACTGCCTTCAAAAACTGAAAACGCCCAATTCCTTAAGAAGGCATATTAATATTCAGCATTTAAAACTCAGACCTTATAAATGCGACGTTTGCCTAAGAGACTTTGGAAGAAGGGAAAACCTAAAGGAGCACATGCAAGTTCATGCCCTTAAAAAGGAAATTTATTGTAATGTTTGCAGTAGGCAATTTACTCATATTCGGTACCTGAAAAGGCATAAATGTGAATGA
- Protein Sequence
- MNKGDRARGNSFEPELSLTSSDVENEEAKADIGKLKMKSSPRKYHTCLCTKKYLSKHHLEIHQKFLCSKMRDKKIRLELNELNSSDDETYIKMVRQNHANYICGCNKRFSTKEMLKNHKMKGDLHDDWLLNEFQDEEDNVMFNCECKESFGTKEELKIHISKGKCREYMKADENYELKRDNLGRNVYFCLLCKQTFCGKNYLLKHRSNSKCKTFGKADMPYECSECRRLFVKKKYLLIHRKKNHIQEFKCEHCSKVFANITTLRNHKKLVHKDGFTKFTCEYCAMKFLGFSALVKHLRKHTNERPFSCHICKKTFALERSLKAHLNFVHFGTGKNFVCDVCGLTFARKEYLANHSHVHQNERRFHCEFCDSSFRWNAAKRKHLFLKHQDRINLYKCRYCEKKFKTSRNKQTKRKKSLQKKEDRLQKDEDERKRGENINSSWLLNEKFPLNSNQVSEGADQQIHSELISDGEESTKKRKRKLNYFDVTYDYPVPTKDGKVHQCRICRKYLKNVTTRNRHEIEKHPPPLPCEFCQKTFTTVLTYHTHRNIHLGLTKFKCQYCGKYLASRSNLEDHEKVHTKERPIECPQCDKTFSSTSNLRVHLKFHAGVKTYFCHVCGKGHVTIGNLKLHVKRHSNERSHVCHICGKGFNGKSELNKHIESHNSEKKYSCQYCLQKLKTPNSLRRHINIQHLKLRPYKCDVCLRDFGRRENLKEHMQVHALKKEIYCNVCSRQFTHIRYLKRHKCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -