Rarc036699.1
Basic Information
- Insect
- Ricinus arcuatus
- Gene Symbol
- -
- Assembly
- GCA_027475445.1
- Location
- JAOXJT010008343.1:1496-4219[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.2 1.7e+03 1.0 0.1 3 17 126 140 124 141 0.88 2 17 0.014 3 9.6 0.4 1 23 149 171 149 171 0.98 3 17 0.2 43 6.0 0.7 2 23 186 207 185 207 0.97 4 17 2 4.4e+02 2.9 7.2 1 23 234 256 234 256 0.78 5 17 0.0045 0.97 11.2 2.3 2 23 264 286 264 286 0.96 6 17 4.6e-07 9.7e-05 23.8 5.8 1 23 292 314 292 314 0.98 7 17 8.8e-05 0.019 16.6 1.5 1 23 323 346 323 346 0.96 8 17 0.00099 0.21 13.3 0.9 1 23 358 380 358 381 0.95 9 17 0.00018 0.039 15.6 3.3 1 23 402 424 402 424 0.97 10 17 5.2e-05 0.011 17.3 0.7 1 23 430 452 430 452 0.98 11 17 0.41 88 5.0 8.0 1 23 470 492 470 492 0.91 12 17 0.019 4.1 9.2 2.3 1 23 498 521 498 521 0.95 13 17 1e-07 2.2e-05 25.8 0.5 1 23 537 559 537 559 0.98 14 17 9.6e-07 0.0002 22.8 1.3 1 23 565 587 565 587 0.98 15 17 2.2e-05 0.0048 18.5 0.9 1 23 593 615 593 615 0.99 16 17 8.4e-06 0.0018 19.8 1.6 1 23 621 643 621 643 0.96 17 17 5.3e-05 0.011 17.3 1.8 1 23 649 671 649 671 0.98
Sequence Information
- Coding Sequence
- ATGGACAAAATTGCTTCCTGTCTTCCAGTACAGATTAAAAAGGATGATAAGCTATCTAAATTAGTCTGTCTCACATGCTTTAAAAAACTTGATGAGATGAAGAAATTTATAGATTCATGCATTGAAGCTGAAAGGAAGCAGTTGCTGACTTTGTCCAAAGGGTCACAAAAAATAAAGTTTAAGGAGTGTCCAATTTGTTTATCAAATGATGCAAAGAAAAAATCACATGCAAATAGTTTAGGATTTTCAAAATTTTTTGAAAATGAAAATAAGAAGCACTTGAAATCTTCTGAAACAGCTAAAAACTTGGAACAAATTGATTTTCTGCCTGGTGACCAAAGTAAAAATGAGGAAGTTGATGTCATACAAATATTTTGCTTTGTTTGTCAGAAAGAAGTTAGGCTTTCTTCTGCTTTAAAATCAGAATGTCATGATAATAATAAATTCTCTTGCTTTTTGTGCCAAGCTAAATTTAACGATAATAACGAAATCTTAGAACATTTAAAAATTCATTTTATAGAAATAATAGCTATAGAAGAAAATCAAGTGAGCTGGAAATGTTTAAAATGTGAAACAGTTTCAAATGATGGAAATTTATTCGAGAAACATTTTAGAAGTCACGGAATAGATGTAGAAAAAACAAAACTCCATTTTGATGATAATGTGAAAAAAGTCGACAGTTATTCTCCTAaaaaaatttaccgttgtcatctttgttcaaaatcgttcagatgcaaaaACAGACTTGAGTTCCACATTAAATTTCATGGGAGGGGGTCGAAAGCTGGACAATGTTCGGAGTGTCGTAAGGAATTTGCAACAGAATTGTGTCTCTACAAACATATGTTATACAACCATCTAGATCCAAGGATTTTTACATGTGAGCATTGTGGAAAGACATTCCGTAACAAAAGTTCTTTGACTTATCACTTCAGATCTCATAGCAGTTTAGAAGCGATGAAACCTTTCACGTGTGATATATGTAAAAAAAGATTTGCTCGGAAAAATATACTTCGTGATCATATGATGAATCGTCACGGTTCGGGCATGGAAACGCAGCCTCGAACATGCTTTCAGTGTCATGTTTGCAAGGAGGTTTTTCCCAATACGGATTCTGCTATATCTCACGTGGAAATTCACCATCCCGAAAAAGTTGATGAGAAAGTTGGTTACAGTTTCGACATGCTTACAATAAGTAAATTATTTACTTGCGAATTCTGTGACAAGTGTTTTTCATTGCCAATCAATTTGATAGAACATAGGTTGCACCACAGCAATATAGTTAAATATCAATGTAAAATGTGCAACGAAGAATTTGCGAGTTTCGTCGATTTGAAAACTCACCAAGAAAACCATGTTTCCGATGGAATTGCAGATTATAAAAGTGATTTTAACATTTCAACCTTATTCATGTGCCAGTTTTGTGAAAAATGTTTTAAGAGCTACCAAGCTTTTAACATTCATTGTAAAAACCACACGGGGGAAAAGCCATACAAATGCAGATTTTGTCCCGAAGTGTTTTCTACATATAAAGATTCAACGAATCATCGCTTATCGAAACATGTCGAAGAGAAAAATGCATTATTTACAACAGAATGTTTGAAGCCGTTCGAATGTCCATATTGCAGTAAAGCTTTCACATCAGGTAGCACGTTAACGAAACATATTAGAATTCATACAGGGGAAAAACCATTTCCTTGTCATATTTGTAATAGGAGTTTTGCCCAAAGTTCAGGTCTTTATACCCACCTCAAAGTGCATTCTAACGATCGGCCTTATCAGTGCGATCTATGCGAGAGATCGTTTAAAATACTCGGGGATTACAAACAGCATATCAGAAGGCATTCCGGAATCAGGTCCTATTTATGTGAAGTTTGCAAAAAGGCCTTTAAAACTCAGAGATCATTGTCGCAGCATAAAAGAGTCCATACTAATTTGCGACCTTATGTATGCGATTTGTGCCAGCAGGCTTTTCGCCGCTCTCACACTCTTGAGATTCATAAATTAAGGCACGCGAGAAATATATAA
- Protein Sequence
- MDKIASCLPVQIKKDDKLSKLVCLTCFKKLDEMKKFIDSCIEAERKQLLTLSKGSQKIKFKECPICLSNDAKKKSHANSLGFSKFFENENKKHLKSSETAKNLEQIDFLPGDQSKNEEVDVIQIFCFVCQKEVRLSSALKSECHDNNKFSCFLCQAKFNDNNEILEHLKIHFIEIIAIEENQVSWKCLKCETVSNDGNLFEKHFRSHGIDVEKTKLHFDDNVKKVDSYSPKKIYRCHLCSKSFRCKNRLEFHIKFHGRGSKAGQCSECRKEFATELCLYKHMLYNHLDPRIFTCEHCGKTFRNKSSLTYHFRSHSSLEAMKPFTCDICKKRFARKNILRDHMMNRHGSGMETQPRTCFQCHVCKEVFPNTDSAISHVEIHHPEKVDEKVGYSFDMLTISKLFTCEFCDKCFSLPINLIEHRLHHSNIVKYQCKMCNEEFASFVDLKTHQENHVSDGIADYKSDFNISTLFMCQFCEKCFKSYQAFNIHCKNHTGEKPYKCRFCPEVFSTYKDSTNHRLSKHVEEKNALFTTECLKPFECPYCSKAFTSGSTLTKHIRIHTGEKPFPCHICNRSFAQSSGLYTHLKVHSNDRPYQCDLCERSFKILGDYKQHIRRHSGIRSYLCEVCKKAFKTQRSLSQHKRVHTNLRPYVCDLCQQAFRRSHTLEIHKLRHARNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -