Rarc007061.1
Basic Information
- Insect
- Ricinus arcuatus
- Gene Symbol
- -
- Assembly
- GCA_027475445.1
- Location
- JAOXJT010000009.1:2490365-2495227[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0097 2.1 10.2 0.2 1 21 145 165 145 166 0.94 2 23 5e-07 0.00011 23.7 2.8 1 23 242 264 242 264 0.98 3 23 0.042 8.9 8.2 0.7 3 20 271 288 269 290 0.90 4 23 0.00033 0.071 14.8 0.9 1 23 297 320 297 320 0.96 5 23 0.023 4.9 9.0 0.9 1 23 359 382 359 382 0.92 6 23 0.056 12 7.8 2.8 1 23 415 438 415 438 0.92 7 23 1.1e-05 0.0024 19.4 1.6 1 23 469 491 469 491 0.98 8 23 3e-05 0.0063 18.1 3.2 1 23 504 526 504 526 0.98 9 23 6.3e-06 0.0013 20.2 2.1 1 23 532 554 532 554 0.98 10 23 3.2e-05 0.0068 18.0 3.5 1 21 560 580 560 581 0.96 11 23 0.0004 0.084 14.5 0.9 1 21 588 608 588 609 0.95 12 23 8.1e-05 0.017 16.7 2.1 1 23 669 691 669 691 0.96 13 23 2.9e-05 0.0062 18.1 0.3 1 23 697 719 697 719 0.99 14 23 0.008 1.7 10.4 0.4 1 21 725 745 725 746 0.93 15 23 3.4 7.2e+02 2.2 1.6 1 20 753 772 753 774 0.90 16 23 4 8.5e+02 1.9 0.0 6 19 785 798 784 801 0.93 17 23 0.0033 0.71 11.6 2.0 1 23 804 826 804 826 0.99 18 23 1.4e-05 0.003 19.1 1.0 1 23 832 854 832 854 0.98 19 23 0.00012 0.026 16.1 0.1 3 23 895 916 894 916 0.95 20 23 0.0054 1.2 11.0 0.5 3 23 935 956 934 956 0.98 21 23 0.005 1.1 11.1 1.6 2 23 968 989 967 989 0.96 22 23 2.5e-05 0.0052 18.3 2.6 3 23 997 1017 996 1017 0.98 23 23 0.00054 0.11 14.1 0.9 1 19 1023 1041 1023 1044 0.95
Sequence Information
- Coding Sequence
- ATGGCACTGACTGAAATAGAGGCAGATCGTTCGCCTGTAGAAGATCCTCTGGATTGCAGCAAAGAAAACGGTAAAAATTACAGTTTTCAAGAGAATTGGATTCTGTTTGAGCCAAATGCTCAGTTCGATGGAAAAGCAGAAGAATCAATCATTCATTCGCATACTAGCCCAAGACTTCGCGTTAGGAAACTTAGTAAAGTTGCACTCTCCGAAGTGGAAGATAATTCCGATTGTGAATGGAGACCATCGAGGCTAAAAAGAAAAAGAAACAGAAGGCATATTTTGGCGGATCACGGAGAGAGAAAAATGTCGGAGACAGAAACCGATTCGGATGAAGAAAATACGATTCCAACGAACAGAAAAAAATTGAGAAGACGGAAGACGACGGAAAATTATTTATTCTGCGATATAGATGGAAAAGAAGAGGCAGGATTTCCATGCCAAATGTGCTGCAAGGTATTTGTCAGCACTTCGGCTCTGAACGAGCATATCGCCACCGAATGCCAGCCCAATTCTCACGAGGAATCCTCTAAATTATTCAACAATTCCAGTGCTTTGATTGAACATGTCGGAGATTCTCAAAATAAGGCAGTTAAAATCTGTAAGGAAAAGGAAACCGTCAGAGGTGGAGAAGAATCTTTCAAACGTGTAAGAGTCAATCCATCCAGTGAAAAAAATGAAAGATGCAGAAAATATTATGAACAGTTAAAAACGGAGCGTAAATACCAATGTGAAATTTGTCAGAAGACTTTTATTACCAGTGGACATTTAAATACTCATATGTATCGTCATTCGGGCAAAAAGTGGGCATGCGATGGCTGTGGAAAAAATTTCTCCTGCGAGAGAAGTCTTCTAAGGCACAAGGATACATTCCCCGGCAATCACTGGTTTCCCTGCAAATTTTGTGATATGACATTTTTTCGTATCGTAAACTTCGCCAAACATATGGAAATAAAGCATCCGGAGGCCTTGTTGAATGGTAAAAATGACATTAATTTAAATTTAAAAATGAAAATTGACAAAAACGAAAATGTGAATTCGCCGAAAATTAACGACAGCGCCAACCGAAAGGATTTCGTTTGTGAAAAATGCATGAAAACATTTCAGAGCTCCGATATGTTATTCCTCCATAACAAGGCGATGCATTGCCCGAATGAGGAAGTGAGGAGGAAAACGGAAAACGGAAATAATCCCCAAGAAGAGGAAGAAAAGGATAAAGATTCGAATTCGGACCTAGCAAATTACAAGTGCGAGATTTGCTCCAAAGAATTTGTCAGCTTCGAAGGATTCGATTACCACAAGAATCATCAGCACATGGGAAAAGAGTCAAAAAAGAAAAGGAAGCGGAAAATTAGTTGTTCGAACGACGGAGACACGGACAATACTGAATCCTTTCCAGCCAATTTTATGTGCAAAATTTGCTCAGCTTCATTTACGATGAAATCGTCGTTGCAAACTCATTTAAAATCGCACAATGTGACAAAAAATGTTGAAGTTAAATCGGGATCTCATCAATGCTGTATTTGTCCGCGATCATTCACCAGCAGCGATGGGCTAAAGTATCATTTAGCAACCCATACGGGAGAACGAAGGTTTTCCTGTGATCAGTGTGGGAAAAGATTCATAAAAAAGACTCATCTTTCCGAGCACATAGCCACTCACTCAGAAGTAAAGTATTTTAAATGCCCAAGATGCCCCAGGACGTTCAGCACCCATTCCGCTTACAAGAAGCATATAAAACACTTTCCCGGTTTGCATTCTTTCCCTTGCAACAAATGCGGAAAATTGTTCACGAAAGAATCGATGATTGAGAAGCATATGTGCGTGGATTTAGTAAAAATTACAATGGCACCAGAAGTAAGGGCTTTATTAAGCGAGGACATGATTGAAGAATATTTGTGCTTGGCCGAAGAACATATGGTGCAGGATTTGTCCATGAATAATGAAAGTAACGACAACGGCGAAGTCCATAAGAAGCAGGAACGCAAAGATGACAGCGCAACACATTCCTGTTACAAATGCTTTAAGGTTTTTCCCAATTTGTCATCGCTGCAGGCGCACCAAAATGATCATATAGGAAAACAGAAATATCAATGTCGGTTTTGTCCGGAAAGCTTTAAGAGAGCGGACGCGTTTGGAGCTCATATACGCAATCATTTGGGAAGCACTCCTTATATGTGCCTGAAATGCAATCGTAAATTTATATCTCCTTTTACATTGTCGATGCATGCGAAGAATTATCCGGGAGACCATTCGTTTACCTGCCAGAAATGTCAGAGATGGTTTCCCAGCGAGAAACGGCTTGACAAGCACGAATGCATCCTGCAGAATGCGGATTTTTTCAAGTGCGCTTGCGGATCCACGTTTGGCAATTGGAACGAACTTTTGCAGCACGCAGGGACCAAACCGTACAAGTGCTGCTCCTGCGAGCTCAAATATCCCACTCTCACAGCTCTCGCTCGTCATATCAAAAAACACACGGGAATCAAGCCATTTTCCTGTGAGATTTGCGGCAAGTCGTTTAGAGCGAAAAATAATTATTTAAACCATAAAAACATTCATAAGAACCTGAAGGAAATCCAATGCGAACATTGCGAGTATAAGAGCAAATCTCAGAAAAGAATGGACTTTCATCTCTTCAGAAAACATGACATAGGTTCGAATCTGGGAAAGAGCACACTTTGTCCAATTTGTGGATTAATGTTCCCGTACAGCTCTCAAATGAGGAAACATTTGGAGCTAGAGCACGGAAATGAATTAACGTTCGATGAAGCTTCAAGGAAATCTCTGCCAGCGGAACTGTGCACCCTTTGTGGCAAAATGTTGAATAATAAATACATTCTTGCTAACCACATGAAGAAGGTTCACGACCCAAACGCTTCGAAGAAAGAAAGGAAGATAAAGTGCGAGTTTTGCGAAGAAAAGTTTCGAACTGTGAAGAAGCTTCAGCATCACGCCGAAATACACGAAGCCCCGGGATTAAGGGCCTGCGAAATATGCCACAAGGAATTTTATTTTGCCAAAGAATTGAGAAAGCACATGAAGAAACACGACACCAACAAACCTTATTCTTGCCCGCGTTGCGGGAAGCACTTCAAGGTTTCCGTCAGTTTGAAATACCATTCCACGATTTGCGGAAATGTCATTCAGCGGATGCCGAGCAACCGCAGGAAAAAAGAATTAAAGGAACCATCGATGAACGTTCTCTACGGACACATCGATCCCATTGATCTCAATAACCAATCCTGTATGCTTCAGATTTACGGAAGATAA
- Protein Sequence
- MALTEIEADRSPVEDPLDCSKENGKNYSFQENWILFEPNAQFDGKAEESIIHSHTSPRLRVRKLSKVALSEVEDNSDCEWRPSRLKRKRNRRHILADHGERKMSETETDSDEENTIPTNRKKLRRRKTTENYLFCDIDGKEEAGFPCQMCCKVFVSTSALNEHIATECQPNSHEESSKLFNNSSALIEHVGDSQNKAVKICKEKETVRGGEESFKRVRVNPSSEKNERCRKYYEQLKTERKYQCEICQKTFITSGHLNTHMYRHSGKKWACDGCGKNFSCERSLLRHKDTFPGNHWFPCKFCDMTFFRIVNFAKHMEIKHPEALLNGKNDINLNLKMKIDKNENVNSPKINDSANRKDFVCEKCMKTFQSSDMLFLHNKAMHCPNEEVRRKTENGNNPQEEEEKDKDSNSDLANYKCEICSKEFVSFEGFDYHKNHQHMGKESKKKRKRKISCSNDGDTDNTESFPANFMCKICSASFTMKSSLQTHLKSHNVTKNVEVKSGSHQCCICPRSFTSSDGLKYHLATHTGERRFSCDQCGKRFIKKTHLSEHIATHSEVKYFKCPRCPRTFSTHSAYKKHIKHFPGLHSFPCNKCGKLFTKESMIEKHMCVDLVKITMAPEVRALLSEDMIEEYLCLAEEHMVQDLSMNNESNDNGEVHKKQERKDDSATHSCYKCFKVFPNLSSLQAHQNDHIGKQKYQCRFCPESFKRADAFGAHIRNHLGSTPYMCLKCNRKFISPFTLSMHAKNYPGDHSFTCQKCQRWFPSEKRLDKHECILQNADFFKCACGSTFGNWNELLQHAGTKPYKCCSCELKYPTLTALARHIKKHTGIKPFSCEICGKSFRAKNNYLNHKNIHKNLKEIQCEHCEYKSKSQKRMDFHLFRKHDIGSNLGKSTLCPICGLMFPYSSQMRKHLELEHGNELTFDEASRKSLPAELCTLCGKMLNNKYILANHMKKVHDPNASKKERKIKCEFCEEKFRTVKKLQHHAEIHEAPGLRACEICHKEFYFAKELRKHMKKHDTNKPYSCPRCGKHFKVSVSLKYHSTICGNVIQRMPSNRRKKELKEPSMNVLYGHIDPIDLNNQSCMLQIYGR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -