Rarc038244.1
Basic Information
- Insect
- Ricinus arcuatus
- Gene Symbol
- -
- Assembly
- GCA_027475445.1
- Location
- JAOXJT010000012.1:1587924-1591017[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 4.9e-06 0.001 20.5 1.2 1 23 53 75 53 75 0.98 2 20 0.00088 0.19 13.5 0.5 2 23 81 103 80 103 0.96 3 20 1.9e-06 0.0004 21.9 1.0 2 23 112 133 111 133 0.97 4 20 9.8e-06 0.0021 19.6 0.1 1 23 139 161 139 161 0.97 5 20 3.5 7.4e+02 2.1 6.4 1 23 167 189 167 189 0.93 6 20 6.6e-06 0.0014 20.1 2.5 3 23 197 217 195 217 0.97 7 20 5.2e-05 0.011 17.3 2.3 1 23 223 245 223 245 0.98 8 20 0.12 25 6.8 5.3 3 21 303 321 301 322 0.92 9 20 2e-05 0.0042 18.6 2.7 1 23 329 351 329 351 0.98 10 20 0.0048 1 11.1 1.4 1 20 363 382 363 389 0.93 11 20 0.0012 0.27 13.0 2.0 1 23 392 414 392 415 0.91 12 20 2.8e-06 0.0006 21.3 3.1 2 23 419 441 418 441 0.96 13 20 3.8e-05 0.0081 17.7 3.6 2 23 447 468 446 468 0.96 14 20 2.2e-05 0.0047 18.5 0.9 1 23 474 496 474 496 0.98 15 20 0.017 3.5 9.4 2.5 1 23 502 525 502 525 0.93 16 20 4.2e-05 0.0089 17.6 0.6 2 23 548 570 548 570 0.97 17 20 0.00042 0.089 14.5 4.4 1 23 576 598 576 599 0.95 18 20 9.5e-06 0.002 19.6 0.5 1 23 606 628 606 628 0.98 19 20 6.1e-06 0.0013 20.2 2.4 1 23 634 657 634 657 0.98 20 20 6.9e-06 0.0015 20.1 1.9 1 23 663 685 663 685 0.98
Sequence Information
- Coding Sequence
- ATGGATAGTACCCCCGATAAGGTTGTTGCAAATGCGGAGGTTTACGCAATTCAGGAACAGAGAAATGAATGGAGCCCAGATGGGTCCAGATCGGCGGTTGAATTACCAAAATCGGATGCCTTTATTCGAAACAGTACACCGAAGGATAAGCGGGTGTTTCAATGCAATATATGCAACAAAGTGTTAAATCGGAGATTTAATTTCGAAAGGCATCTTCTGGTCCATTCGGGGGAGACGTTGACTTGTCACGCATGTGGGAAGCAATACCGGGGGCAGTCAGTTTTGGACAGGCACATAAAAGTCATTCATCAGCAGCTGAGGATTCCATCCTTGAGCTGCAGTTACTGCGGAAAGGGTTTTTCCTCGCGGCAAAGCCTGGAAGATCATTTCCGCACCCATACCGGAGAGCGTCCTTTCATATGTGAAATATGCGGGAAGGACTTCAGAGCGAAACCGAATTTAATAGCTCACAAAAAAATACATTCAGGGAATTTGCCTTTCTCGTGCAATTTGTGCGATTACAAGTGTCGATTGAAGGGAACTTTCATCGACCACTGTCAAAGACACGAGGGAAAGCGCACTTGCCTGTGTTCCATATGCGGCAAGGGATTTGTAAATAATTACGATTTGTCGAAACACAAAAAAACACATTCCAAAGATCGCATGTTTTCTTGTTCTTCCTGCAATTTAACCTTCGTCATGAAGCGATACTTAAAAGTTCACATGAAAACTCATATGCAAAAAAGCAACAAGACTAATCCGGGCAAACTGGAATTTCAAGTGCTCGAGGAGAATGGAAAATTTGCCGATTCAGACTTGGCGAATGAAAGACGAGAAAGGGAAATAACTGCGGATTACAGCGCAGATTGGAACGCCATCCCGAAGGCTTGGCTGCGACTGATTTGCTGTAAATATTGCGGTAAAATAAGTTGCGCATCGAAGCATCTGAAGCAGCACGAAAAAAGGAGAACGTGCATAAAGAATTTCATCTGTAACTTCTGCCAGCAGAACTTTACGAAGAAAATCAACCTGGAAAAGCACATTAAGAAACATGAAAGGGAGAAAGTGAAGGACATAAACAAGAAGTTTACTTGCAGTGTGTGCAATAAAAAATTCAAATTCGAAGAGAATATATTAACCCACGAGAAACTCTGCGGTAAAACCGGATCTACTTTCAAGTGTTCAGTTTGCGGGAAAAGGTTCGAGACGAAAGAGCTCGCGGACCAACATTCTAGCAGCCACCATAAATCGTGTGTTTGCCACATGTGCGGACAATCGTTCAACAAACCGGAATCTCTGAAGCAGCACATCAAAACCGTTCACGAGGAATTCAAAATGGTCTGCCATTATTGCGGGAGAGAGTTCACAAGGAAAGCGAGGCTCCAAGAGCACCTTCAGCATCATACCGGCCAGATGGATTTCACATGTCACATTTGCGGGAAAGGCTCGACAAATGCTTATTCTTTCAGCGTTCATTTGGCCACTCACACGCAGGAGACACCTTATTCGTGTTCTTTCTGCCCGAGAAGCTTCAAACACATGAAATACGTTTACTTGCACGAGAGAGCGGTTCATTTGAAATTGAAATCGGGGAAAACATACGTGAAGCCTAAGAAGCCGGGGAAAAACGTCGCGCAAAGGACTTGCCCACTCTGTAACAAGATGTTTAAACGGGAGAGCGCCATGCTGATTCACAAAAGATCGGTTCACGAGGGCAAAAACGGTTACATATGTAAATTGTGCGGAAAGGACTTTAAATATACTTATTTATTATACGTACACAAAAAGAAGCATCACTTTCCGGAGCTTTGCAAATATATTTGCCAGTTTTGTGAGAAACCGTTTCCGGTAAAAACGGAGCTGGAGAAGCATTTGCGGAAGCACACTGGGGAAAAACCATACATATGCAGCCTGTGCGGCAAAACATATTCCTTTCATGGATCGTTGAACATGCACATGAAAACCCAACACGAGAACAAGAAAAATTTTAAATGCGATTCTTGTGATGCCTCCTTTAACTTCCGTTCTCACCTCGCCAGACATATGAATGCCCATGTGGAGAAATTCTCCAATGATTTTTCATATTCCTAA
- Protein Sequence
- MDSTPDKVVANAEVYAIQEQRNEWSPDGSRSAVELPKSDAFIRNSTPKDKRVFQCNICNKVLNRRFNFERHLLVHSGETLTCHACGKQYRGQSVLDRHIKVIHQQLRIPSLSCSYCGKGFSSRQSLEDHFRTHTGERPFICEICGKDFRAKPNLIAHKKIHSGNLPFSCNLCDYKCRLKGTFIDHCQRHEGKRTCLCSICGKGFVNNYDLSKHKKTHSKDRMFSCSSCNLTFVMKRYLKVHMKTHMQKSNKTNPGKLEFQVLEENGKFADSDLANERREREITADYSADWNAIPKAWLRLICCKYCGKISCASKHLKQHEKRRTCIKNFICNFCQQNFTKKINLEKHIKKHEREKVKDINKKFTCSVCNKKFKFEENILTHEKLCGKTGSTFKCSVCGKRFETKELADQHSSSHHKSCVCHMCGQSFNKPESLKQHIKTVHEEFKMVCHYCGREFTRKARLQEHLQHHTGQMDFTCHICGKGSTNAYSFSVHLATHTQETPYSCSFCPRSFKHMKYVYLHERAVHLKLKSGKTYVKPKKPGKNVAQRTCPLCNKMFKRESAMLIHKRSVHEGKNGYICKLCGKDFKYTYLLYVHKKKHHFPELCKYICQFCEKPFPVKTELEKHLRKHTGEKPYICSLCGKTYSFHGSLNMHMKTQHENKKNFKCDSCDASFNFRSHLARHMNAHVEKFSNDFSYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01308847;
- 90% Identity
- iTF_01308847;
- 80% Identity
- iTF_01308847;