Rarc027750.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Ricinus arcuatus
Gene Symbol
ZNF236
Assembly
GCA_027475445.1
Location
JAOXJT010004625.1:12004-18466[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 27 0.28 60 5.6 1.5 1 23 256 278 256 278 0.95
2 27 0.031 6.6 8.6 1.5 1 23 285 307 285 307 0.96
3 27 0.00051 0.11 14.2 0.7 2 20 313 331 312 334 0.92
4 27 0.00079 0.17 13.6 0.2 3 23 342 362 341 362 0.96
5 27 0.047 9.9 8.0 0.9 2 23 381 402 380 402 0.95
6 27 1.6e-06 0.00033 22.1 0.4 2 23 432 453 432 453 0.97
7 27 5.1e-07 0.00011 23.6 0.9 1 23 459 481 459 481 0.99
8 27 0.0048 1 11.1 1.7 1 23 487 510 487 510 0.96
9 27 4.8 1e+03 1.7 6.9 1 23 520 543 520 543 0.92
10 27 8.3e-07 0.00018 23.0 1.0 1 23 656 678 656 678 0.98
11 27 2e-05 0.0042 18.6 2.8 1 23 684 706 684 706 0.99
12 27 2.8e-05 0.006 18.2 3.2 1 23 712 734 712 734 0.98
13 27 0.00038 0.082 14.6 2.8 1 21 740 760 740 764 0.89
14 27 0.0041 0.88 11.3 9.0 1 23 820 842 820 842 0.96
15 27 5.5e-05 0.012 17.2 3.2 1 23 848 870 848 870 0.98
16 27 6.3e-05 0.013 17.1 2.1 1 23 876 899 876 899 0.98
17 27 0.00022 0.046 15.4 6.8 1 23 905 927 905 927 0.98
18 27 0.012 2.6 9.9 1.0 1 23 1124 1146 1124 1146 0.96
19 27 0.0031 0.65 11.7 0.6 1 23 1152 1174 1152 1174 0.96
20 27 0.0036 0.78 11.5 1.5 1 23 1180 1202 1180 1202 0.97
21 27 4e-07 8.6e-05 24.0 0.8 3 23 1280 1300 1279 1300 0.98
22 27 2.6e-06 0.00055 21.4 5.8 1 23 1306 1328 1306 1328 0.99
23 27 8.4e-05 0.018 16.7 1.3 2 23 1335 1356 1334 1356 0.97
24 27 1.4e-05 0.003 19.1 3.1 1 23 1362 1384 1362 1384 0.98
25 27 6e-07 0.00013 23.4 1.4 2 23 1553 1574 1553 1574 0.97
26 27 7.2e-07 0.00015 23.2 0.2 1 23 1580 1602 1580 1602 0.97
27 27 0.012 2.6 9.9 4.6 1 23 1608 1631 1608 1631 0.97

Sequence Information

Coding Sequence
ATGGATGACATAAATAATGAATTGAAATCTTCAATGTCTGAAAATACTCCATTTGTAATTGAATTAGAAAAAAATGGTGCTGTATGTGTTAAAGGGAATTCGATATATGAATTAACAAAATTTGATGGAAGCAAACTTCAGGTGACAGGACTAGTATCTCAAAATGGTATTTCAATTTTTCCTATGTCATCAGATCTTATACAAAGTGATGATATGCTTATAGAGCAACCATTTTTAAAAAATATTCCACTAGAAAGTGAATCAAGTCAGTTTACATTAGATGAAGATGTTATTGTGGCACCTGAGGATTTAGTTCCAAAAAAAGATTTTCACCAGACTGATGGATATCAAGCATCTGATAATGTGAATGTAGAAATTGAACAGATTTTGGGATTTGAAAATAATATTTCAATTTTAGAGTTAGTTGATTCTCTTGACAGTAATGGAAAATCAGTATTAACACCTTCAGTTATTTGTAAGAATTTATCTGGTGATGTTGTGTTTGAAGTAACTCCAGTTGATTTATTATCATCATTACTGGTTGATTCTTCTAAAAGTGAAAACAACAAGATACTATCTGTCACAAATCATAATAATAAAGATGTCAATAAAGAGATATTGGAGTCGTCAAAGACAAGTGAAATTAGGACTGATAATCTGAAATCTAATTCAGGGGCTGAATTGTCTTCCTCAATACCAGTAGCAAATAAAAGAGGGCGTCCAAAAAAGGAGAAAGATGTTGAACCACCTTTaagaagaggaccatttttttgtgaaatttgtcatacaaaattattaacatggcagcaattaaaagcacataaggatattcatgctagagaaagtaaaccatttgcgtgtaaagtttgttgtatgagtttcaatGTTGAGAAGAATCTAAATCTTCATATGTTATTGCACAATGTAGGAAATTTAACATGTACAGAGTGCAGTAAGACATTTACAAGATTTGCATCGTTTAAAGCACATTTACCTGTTCATGAAGAGGAAGAAAATGTTTTTTGCTCAGAGTGTGGTGATGAATTCACGAACAGTTCGCAATTGGAACAACATCTTGCAGAGCACAGAAGTGAATGGGAGAAATCTTTGACTAATAAAGTTGAAGCAAAAGGTTCTTTAACATGCAAAGCTTGTAACAGAATTTTTACAAATCCATTATCATTTGAATATCATAAGAAGGATCATCAAAGATTGAAAAATCAGTTGCTAGCATTAGCGCCTAAAAAAAAGAGGAAAAAATTTCGTGGGCCAGGAGTTTATAAATATGGAAATGAATGTACAgtttgcaaaaagacatttgctaaaccaagtcaacttatccgtcacgttcgcatccacacgggagagaaaccctataagtgttcaatttgtaacacggctttcagtcaaaaaggttccttgcagatacatatgtcaaaacataatggctataaaccttaTGTTTGCTCATGCTGTTCACTTTCATTTTCTCAAAGAGGAAATTTGTTAACCCATGTAAATAAAGTTCATCGTATTCCAAAAGAAGGTGAAGAAATTTATAAGTGTGTTAAATGTTCATGTTCTTTCAAAAAGTTAGCAAGTTTAAACTGTCACGTTACGAGGTTTCACATTACAAATAAATCGGAATCCGAAAATATTGCCGATGTAGATATTCTTTTGAATCAAATTGCTGAATTAGGAAATAATTTACCGAACACATCCGACACCGATATTTTGCAAACGGCAATTCGTATAAGTGGACTTCCCGTTTCTATAAGATCCGGAGAGAATGTCGAAAACACCACTAAAATGGAAAATGTGCCTACTGAGAATTTATTTGCGGAGCAATCTCTTCGAAGTAACGATATCTCCGAAATCAGAATAGTGACTATTGCTGACAAGACTGATGATGGAAATATAAAGCATTTCGCAGTCAAACAACGTCGAGAAGGGAACGTCCGATGGCATGAGTGCAATGTTTGTCAAAGAGAGTTCAAAAAACCGTCCGATTTAATAAGACACATACGCATTCATACAAGGGAAAAACCATTTAGATGTGGTCAGTGTTTTCGGACATTTTCCATTAAATCCACTTTGAAATCTCACATAAGAACACACCAAAGTTCTAAGTTGCACGAATGCAAGACATGTGGGAAAAAAGTATCATCATCCAGAAGTCTGAAAATCCATCAGCGATCGCATGTTGGGATTAGGCCGTTTCATTGCAATTTGTGCTCAAAATCCTTCACAACTTCGGGCCAATTGAAAATGCATTTTTCGTCGAACGCACATAAACTTCGCTCGGAAAATTCTGGAGCTGATGTGGAAACCGTTAATAGTAATTACTTTTTTGAGGAGCCCTTTTTGATTGTTGGCGATGGTGAATTTCGCCAGCAGCTATCAAGAAAGGAGAAGCTTATTTCTCGAAGTCAGAATGCTAGCAGTTCCGAAAGACCGCACGAATGTGAATATTGTCATTTAAAATTCAGGAaatctagtcatttaaagcagcacaagctccagcacacgggagaaaaaccattttcctgttctgtctgccataaaaatttcactacaaacggagttttaaaaatgcatttaaaaacacattcgggtcaaaaagatttcgaatgcgacagatgtactagcaagttttcTACTAAGGGTAGCCTGAATAGGCATATCCAAACATTCCATAGCGAGGAACGACCCTATATGTGTCCTTATTGTCAAAAATGTTTCAAAACATCTGTCAACTGTAGGAAACACATTAAGATACATAGATATGATAACAATCAGCAGTTCTTTGGGCTGAAACTGGATGAAAATTATTCCGGAACCAGTAGGGTTTTGGAAGAGCAAAACGAAGAAGTACCACCAGATGAAGAAAATCAAGAATCCGAGGCCTCGGAAACCATAACACAGACTCTTTTGGCCGATTCAAACGGAACCATAACCTTGCCATCTTTGACTCAAGAGTCGCTAACTCAGGAAAGTATTCAAGAACTGGAGCAGACATTGAATAATCAGCTTTTCGGTGCAGAACAGGGATCGGAATACACGGTTCAAATGATATCTTCGGTCGAGGATGATATTAGAAAGGAAGATGATTTTATCGATGAACCACTCGCACCGAAAACTTTGATATTAAACGTGGACGAAACGATCGTTGGACCGTCTATAGTGCAAGCAGTTTTCTCTCAGAATACTGAGCTTCAGACGGTATCAAACTTGTCCGATATATTGCCGGACACGAAAGAGAGCGAATCTTCATTGGTGGAGGAAGAAAATGAGGTGAAGCAGGAGGTAGAGGAGGAAGAGGACTTAAAAGAAACCGAAACAAGCGAGTGTGAAAAGGAGGATAAAAACCATATTTGTAGTGTTTGTGCCAAAAACTTTTCTTCTGGGCAAGCGCTGAAGAATCATTCCAAAATTCACAGCGGCAAAAAAGAGTTTTTCTGCTCTTTATGCGGCTGGAGTACGCTAACGCGATCATCCCTAAAGCGCCACGCAAACATTCACAGCGAAGAAAAAAAATTTACCTGCTCGGAATGTCCGGCGAAATTCCGGTTGGAGCTTCATTTGCGAAGGCACGCAAAGTTGCACGATGAGGAGTCCAAGGAGGTTGGCAACACTCGAATCGGAAGACGAAGCAAGGGCCCGTTCAAGGAGCTGAGCGACGCGGAGACGGAAATACTTGCCGCACAGGATGTCCGGCATGGAGCGAGCGTTTCAGAAAAAATATTAATTGCGTCCGCTGCGGAAAAGCTGAGAATTGATGAGAAAAAGAAGTCGGACACTCATATGGAAGAAATCCGCGCAAATTACGGCAACGATTGTAAATATTGTTCGAAAAGTTTTAAAAAACCGTCCGATTTGGTCAGACACATTCGCGTTCATACGGGGGAGCGTCCGTATCAGTGCAGTCAGTGTCAAAAATGTTTCACTGTAAAGTCGACGTTGAAATCACATCTTCGCACCCATTTCGATGTGAAACCTGTGACATGCCACATATGTCAGTCGACATTCGCTGCCAAGAGCTCCCTGAAGGTTCACATGAGATTACATACGGGGGCGAAGCCTTTCGAATGCGATATATGCGGTCAGCGATTTCGAACGTCGGGACATAGAAAAAACCATCTCAAGACTCATAACAAAAACAAGCCAAAGAGTTGGAAGAAGCAGCAACTGCAGATGCTGAATAAAATAGCCGTTGCCTTGGTCGACAATTTGAACGAGCAAGCGCAGGCAAATAAAAACACTGTGAAGAACAAAGTTCGGTCATCGGGGGCGGGACTACATCAGGTATTCGAGAACGAAGACAATATTGAAATGCAGAATACGGAGGCCAATGAAACCCTTCTTCTTCAACTGAATGATCACAACAGTATTGTACAACTACTCTCAGATGAGCAGGAAGTTAATGAAGTAACTCCTGCTGAGGAAAACGAGAACTCTCAGCAACCTGTACAAGTTCATATTTACACGTCAGATGGCCAAATGTTCATAACAAGAGAAAATTCAAATCTTGTAGTCTGCCCCGATGATAACGATGATGATAATAATAAACCCAAATCTGTGCCTCAGTTCGGTGAATCACAGGAAGAAATTGTGATACCGGAGAGGAATGAAGTAGAATTATTAAAAAGGAGTGCttcctgcaaattttgtgggaaggagttttcaaagaaaagcctgttggaaaggcacatacgtattcatacaggcgagcgtcccttttcctgtgatatttgtgggaagagattcactcagagcaacgctttggaagctcatttgaaggcccacagagGTGATCGAGCTTATAGTTGCCCTTACTGTGAATTTTCATGCGTTCAGAAAGGTAATCTTCGCTGCCACATAAATAGGACACATCAAGCAACTTTATATATGGAAGATGTCGGGAAAAGCAAATCAAAGGGCGAGAAATGCACCTCGGGTTTGCTCTCAGATAGCTTACTGACCAATCCAGACAAATCTCCTACGTGTGTGAGGTCGTCAGATTTAGATCAAGTTATGGGAGAATTATTTCCACAAGTAACCTAA
Protein Sequence
MDDINNELKSSMSENTPFVIELEKNGAVCVKGNSIYELTKFDGSKLQVTGLVSQNGISIFPMSSDLIQSDDMLIEQPFLKNIPLESESSQFTLDEDVIVAPEDLVPKKDFHQTDGYQASDNVNVEIEQILGFENNISILELVDSLDSNGKSVLTPSVICKNLSGDVVFEVTPVDLLSSLLVDSSKSENNKILSVTNHNNKDVNKEILESSKTSEIRTDNLKSNSGAELSSSIPVANKRGRPKKEKDVEPPLRRGPFFCEICHTKLLTWQQLKAHKDIHARESKPFACKVCCMSFNVEKNLNLHMLLHNVGNLTCTECSKTFTRFASFKAHLPVHEEEENVFCSECGDEFTNSSQLEQHLAEHRSEWEKSLTNKVEAKGSLTCKACNRIFTNPLSFEYHKKDHQRLKNQLLALAPKKKRKKFRGPGVYKYGNECTVCKKTFAKPSQLIRHVRIHTGEKPYKCSICNTAFSQKGSLQIHMSKHNGYKPYVCSCCSLSFSQRGNLLTHVNKVHRIPKEGEEIYKCVKCSCSFKKLASLNCHVTRFHITNKSESENIADVDILLNQIAELGNNLPNTSDTDILQTAIRISGLPVSIRSGENVENTTKMENVPTENLFAEQSLRSNDISEIRIVTIADKTDDGNIKHFAVKQRREGNVRWHECNVCQREFKKPSDLIRHIRIHTREKPFRCGQCFRTFSIKSTLKSHIRTHQSSKLHECKTCGKKVSSSRSLKIHQRSHVGIRPFHCNLCSKSFTTSGQLKMHFSSNAHKLRSENSGADVETVNSNYFFEEPFLIVGDGEFRQQLSRKEKLISRSQNASSSERPHECEYCHLKFRKSSHLKQHKLQHTGEKPFSCSVCHKNFTTNGVLKMHLKTHSGQKDFECDRCTSKFSTKGSLNRHIQTFHSEERPYMCPYCQKCFKTSVNCRKHIKIHRYDNNQQFFGLKLDENYSGTSRVLEEQNEEVPPDEENQESEASETITQTLLADSNGTITLPSLTQESLTQESIQELEQTLNNQLFGAEQGSEYTVQMISSVEDDIRKEDDFIDEPLAPKTLILNVDETIVGPSIVQAVFSQNTELQTVSNLSDILPDTKESESSLVEEENEVKQEVEEEEDLKETETSECEKEDKNHICSVCAKNFSSGQALKNHSKIHSGKKEFFCSLCGWSTLTRSSLKRHANIHSEEKKFTCSECPAKFRLELHLRRHAKLHDEESKEVGNTRIGRRSKGPFKELSDAETEILAAQDVRHGASVSEKILIASAAEKLRIDEKKKSDTHMEEIRANYGNDCKYCSKSFKKPSDLVRHIRVHTGERPYQCSQCQKCFTVKSTLKSHLRTHFDVKPVTCHICQSTFAAKSSLKVHMRLHTGAKPFECDICGQRFRTSGHRKNHLKTHNKNKPKSWKKQQLQMLNKIAVALVDNLNEQAQANKNTVKNKVRSSGAGLHQVFENEDNIEMQNTEANETLLLQLNDHNSIVQLLSDEQEVNEVTPAEENENSQQPVQVHIYTSDGQMFITRENSNLVVCPDDNDDDNNKPKSVPQFGESQEEIVIPERNEVELLKRSASCKFCGKEFSKKSLLERHIRIHTGERPFSCDICGKRFTQSNALEAHLKAHRGDRAYSCPYCEFSCVQKGNLRCHINRTHQATLYMEDVGKSKSKGEKCTSGLLSDSLLTNPDKSPTCVRSSDLDQVMGELFPQVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01308845;
90% Identity
iTF_01308845;
80% Identity
iTF_01308845;