Rarc011220.1
Basic Information
- Insect
- Ricinus arcuatus
- Gene Symbol
- -
- Assembly
- GCA_027475445.1
- Location
- JAOXJT010000002.1:6240961-6243055[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-15 1.2e-11 45.3 0.1 2 45 133 176 132 176 0.93 2 2 3.5 1.6e+04 -3.1 0.0 6 18 195 206 194 207 0.81
Sequence Information
- Coding Sequence
- ATGATGGTTTCTTTCCTCGTGATTCCCGGTCTTATTATCATTCGCGTTCACGGTGCTTTTGTGCGTAAACGTGAAATATTTCTTTGCGGGAGCTCGATTAGCTCGAAATTGGCTTCCTCGCATCGGTGCAGTTTGCCTCTTTTCAAAATTCCCGGTTTAACATCGTATTCTGAATTTCAGAACGTTAAAGCGGAACCTTCAGAAGATGCTCCGAGCCCATATACAGACATATCCATGATGGATGATGAAACTAGCCCTAGTGATAAGAATAATAAGTTCGTTCCGACATCATCCCCGCAAGGGGGATTTCCATCCGATATGCGGAACGTCTCTTCAGGGATTGCAACCTATGTGCCTCAACAAAAACCGGAATGGAAGCGATATAAACAATATACACGAAATGATATACTGAGTGCAATCGAAGCCGTTCGGACTGGAATGAGTGCCCTACAAGCGGCTAGGAAGTACGGCGTGCCGTCCAGGACCCTCTATGACAAGGTAAAAAAGCTTGGGATTACGACTAGCAGGCCTTTCAAACGGGGAACTAACGGCGGTAATTCGAATTCATTTCCATACGGAATGAGTCCGGCTTTAAGCCACGTATTCAGCGGTGTCTCCGAGAACGAAGAGCCTATACCCCCCCATCCGGGAGGGGGCATTCTGGAGCCGATATTTCTCCAGCAGGCGCTCGAACGAAGCAAAGGAGAATTCACCGAGAGGGAAGCACTGATGGCACTTGCTTCGGCCCATGCCCAGACCTCTGCCGGCTCTGGATCAGGTTCCCGACATTCCGGGAGCAATCACAATTCGTCCCCGGAAAACAACGGTCGATCTCCGAGCCCGAACATGATGCCGCTGAAGTACATGAGACACGGAAGCATGACGCCTTCGCCCAACAACGAAGAGCGAATCGAAGAGGAAGACCAAGTCGAGGACCTGTCAATATCGCGCAAAGAAATTCATCCGCCTCCCACGGGAAGCGTCATCGTGCCTCCAATGAGTCTCCTTGCTAAGAAAGCCGAAGAACTGTCCGAAATAACGAGGGATCGAGACCGCGGAAGGATGCGAGACAGAGAAGAGCGGGAAAACGAAATGGATCGGGAGAGGGAAAACGAAAGAGATATGGAACGGGAACGGCAAATTCAAGAAGACATAGAAAATCATTCGTCGGATGATTCCAGAAGAGAATAA
- Protein Sequence
- MMVSFLVIPGLIIIRVHGAFVRKREIFLCGSSISSKLASSHRCSLPLFKIPGLTSYSEFQNVKAEPSEDAPSPYTDISMMDDETSPSDKNNKFVPTSSPQGGFPSDMRNVSSGIATYVPQQKPEWKRYKQYTRNDILSAIEAVRTGMSALQAARKYGVPSRTLYDKVKKLGITTSRPFKRGTNGGNSNSFPYGMSPALSHVFSGVSENEEPIPPHPGGGILEPIFLQQALERSKGEFTEREALMALASAHAQTSAGSGSGSRHSGSNHNSSPENNGRSPSPNMMPLKYMRHGSMTPSPNNEERIEEEDQVEDLSISRKEIHPPPTGSVIVPPMSLLAKKAEELSEITRDRDRGRMRDREERENEMDRERENERDMERERQIQEDIENHSSDDSRRE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -