Rarc026591.1
Basic Information
- Insect
- Ricinus arcuatus
- Gene Symbol
- bab2
- Assembly
- GCA_027475445.1
- Location
- JAOXJT010000005.1:2035705-2041484[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.1e-12 9.9e-09 36.0 0.0 1 39 493 532 493 536 0.90 2 4 5.1e-13 2.4e-09 37.9 0.1 1 39 547 585 547 588 0.95 3 4 2.7e-17 1.3e-13 51.6 0.0 1 45 602 647 602 647 0.97 4 4 4.9e-18 2.3e-14 54.0 0.0 1 42 654 696 654 699 0.94
Sequence Information
- Coding Sequence
- ATGTCCGGgcaacactattgtttgaggtggaacaattatcagtcgaatatgacttctgtgtttcaccagctacttcaaacggaatcgtttgttgatgtcactttatcgtgcaatgattcctcgttgagagcccacaagGTGGTTCTCTCGGCTTGTTCGTCGTATTTCCAAAAATTGCTGATACAAAATCCCTGTAATCATCCAACAATAATTATGCCATCGGATATATCATTCAATGATCTAAAAGTTATCATTGATTTTGTCTACCGAGGAGAAATTGACGTTGATCAAGCTCAACTTCAGTCATTGCTAAAAACTGCTGACCATTTGAAAATCAAAGGTTTATGTGAAGTGCCGGACGCCAGAGACGCAGGAACCGATTCCGAAGAAGGTCGAGCTAATTTTAAGGGAGAAATCAATATTCTTGGACCAGACTATCAGCGGCAAACCAACCAACATGTTAAAGCGGTCAACTTCGAAAATGTTATTCATTCTTCTAATTTGAAAGCTTCGTATCTTTCAACAGAATTGGCCCTGAATCATATTCCCAAGATAAAGTCCCCGGACAGTCCTCCTTTATTCACGCACGATGGTTTTATGCCGGTGAAACAATTCTGCGACACAAAGAATTTGCAATCGAATCCAACTGACAATCAAAACCATTTAATTAAAAGGCATTCAGTAAAAAGGAGAACTTCTCCTCTCGTTTCTCCAGGAGGTGGACGGACGAGCCCGAGCAAAAAGAAGAAATTCAACTTAGAAGTCAAGAAATCTCCTGTTCTTAAGGATAGAGCCATTCAAAGTGATTTAAGCGACAGCGGTATGAATCTTCAGGAAAATGGGCTCGAACAAATAACCGGAGTTCCTAGTCCAAGAACTGGAAACATAAGCGATCCAGTAAGACACGAACCTCAAGTATGGCGTTGGATTCAAAGCAATGGCGAGCGCGTACCAGAATGCATAACTGTTGCCACTTCCACGGAAGAAGACCAAAAAAACGTACCTGTTATGATATTAGAACAACCAATGGCTTCTATGCCAATGATAGTCCACAATTTACCAGTTGCCTTGTCACCTCAAGTTGTCGTTGAGACAAACAATAGCAAAGGAAGTAATCACAGTGCAGCAGAAGGCACGCCACCCGAAGTGGACATTCCTCCTGAAGCACAACCACCGGCTCCCAGTGCAACACTTGTCGAAAATCTAGATCTCACGGGGTCCAATGAGCCCCAGCAAAACGACATAAATGAAGAAGACAATGATAATGTAAAAGTGAAGTTTGAGACATTAAGATCTGTCGATCAGACTGGAGATAATGTTGACATCGAAAGCCACATATCTGAAAGAAATCACGATGAATCCGACCAATCTATGCAAACAATGATGATCACTCCTGAGCTGTTGGGATTATTGCCCTCTTCATCTGGCAATTCGGTTGACGGAGGAGAATCTGATGCAAAAGGATCAAAGAGTTGGACGCAAGATGATATGGAACTGGCATTAGATGCATTGAGAAATCATAATATGTCATTAACAAAAGCATCTGCAACATATGGTATTCCAAGTACTACTTTATGGCAACGAGCTCACAGACTGGGCATCGATACTCCCAAAAAAGAAGGAAATTCAAAAAATTGGACTGAAGATAATTTAAACAGTGCATTAGAAGCACTCAGAACCGGCACTATATCAGCTAATAAAGCCAGCAAAGCATTTGGTATTCCAAGTAGCACTTTATATAAAATAGCAAGAAGAGAAGGAATTAGATTAGCAGCTCCATTTAATGCAGCACCTACTACTTGGACGCAAGATGATCTTGAACGAGCTCTGGAGTCGATTCGATCAGGTCAGGCTAGTGTCCAGCGTGCTTCCACGGAATTCGGTATTCCCACAGGAACGCTATACGGAAGGTGCAAGAGGGAAGGAATTGAATTAAGCAGGAGTAATCCAACACCTTGGAGTGAAGACGCCATGGGAGAAGCTTTGGAAGCTGTTAGGGTTGGACATATGAGTATTAATCAAGCAGCTATACATTATAATCTTCCTTATTCATCCCTATATGGTCGATTTAAAAGGGGTAAATTCGATACTGAAGAAGTAAATAGTAACAATGGAGAAACTCCTGGAAGCCAAATGATGTTGGTCAACTACCAACAGGAAATGCACCATTATCAACAACATTCGAACAGTTGA
- Protein Sequence
- MSGQHYCLRWNNYQSNMTSVFHQLLQTESFVDVTLSCNDSSLRAHKVVLSACSSYFQKLLIQNPCNHPTIIMPSDISFNDLKVIIDFVYRGEIDVDQAQLQSLLKTADHLKIKGLCEVPDARDAGTDSEEGRANFKGEINILGPDYQRQTNQHVKAVNFENVIHSSNLKASYLSTELALNHIPKIKSPDSPPLFTHDGFMPVKQFCDTKNLQSNPTDNQNHLIKRHSVKRRTSPLVSPGGGRTSPSKKKKFNLEVKKSPVLKDRAIQSDLSDSGMNLQENGLEQITGVPSPRTGNISDPVRHEPQVWRWIQSNGERVPECITVATSTEEDQKNVPVMILEQPMASMPMIVHNLPVALSPQVVVETNNSKGSNHSAAEGTPPEVDIPPEAQPPAPSATLVENLDLTGSNEPQQNDINEEDNDNVKVKFETLRSVDQTGDNVDIESHISERNHDESDQSMQTMMITPELLGLLPSSSGNSVDGGESDAKGSKSWTQDDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGNSKNWTEDNLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTQDDLERALESIRSGQASVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGHMSINQAAIHYNLPYSSLYGRFKRGKFDTEEVNSNNGETPGSQMMLVNYQQEMHHYQQHSNS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01308611;
- 90% Identity
- iTF_01308611;
- 80% Identity
- iTF_01308611;