Rarc018796.1
Basic Information
- Insect
- Ricinus arcuatus
- Gene Symbol
- retn
- Assembly
- GCA_027475445.1
- Location
- JAOXJT010000001.1:4994552-4999276[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.1e-19 1.5e-15 58.6 0.0 17 89 7 77 3 77 0.94 2 2 2.8 1.3e+04 -2.2 0.0 23 38 415 430 377 435 0.72
Sequence Information
- Coding Sequence
- ATGCCGCGGAGAGACCTACGGACTCCGATCAACCGGCTGCCGATAATGGCGAAGTCAGTATTAGATCTCTACGAATTGTACAATCTGGTCATAGCTAGAGGAGGACTAGTCGACGTTATTAACAAAAAGCTTTGGCAAGAAATAATAAAAGGACTGCATTTGCCTTCCAGCATTACGTCTGCTGCTTTCACCCTCAGAACACAATACATGAAGTACCTGTATCCCTACGAGTGCGAGAAGAGAAGACTCAGCACACCGTCCGAACTCCAGGCCGCCATCGACGGCAATCGACGGGAAGGCCGACGTAGCAGTTATGGAACGTATCCGGAGCTAATGCAGAGATCTCCCGGGCCGACTCACCCATCGCAGATGAGTCCCCTCGGCTTGGCCAATCAGCTAAGACCGCAAATAAACGGCAACGGGCATCTTCACCATCCAGTTCTTCATCCAACCCTGGGCCAGCCACCGTTGCCAGGTAGGTTCGAAGAAGGTTTTCCAGGTCCTCTCCTTCGGAAACGAAGACATTCGGAGCACTTTAACCGTGATTTAAAATCGACCGCAAGAAATCGGCCTCGGCAGTTGGCCACGGTTCAAGCTCCCATCCCTCGTATCGAGGCGGTGCTTGGTTTTGTCTGCTGCCACTGCGCCTCGCGCCTTGCCGGAGAAACCTTTTTGTTCCTGTTGCTCCGCGGAGACCATCTTCGAGCGTTTCGTCGGCCGCTGGCGAGTCGCTCTACCCCGCTTCTCTTGGGGTTGATCCGAATATCCGGGAGGGATGATGGAAGGGAGGTTTGGGGGTTCACAAAATGCCAATCAATGACGTTAAATATTCTCGCTAACTCGTTATTTCGGTCATCAATTACGCCGGTTGTCAGCGGCTTGGCACCCTCCACGAATTCGTGCAACGTTCCAAGCTTGTACATTACTCTTACTGTCCTCATTTCTCATTGTTGCTTCCGCGTTTTCCTGCCTCCTATCCCCGTGTTCGTGGCTCGTCTTCCGTTCGATCGTGGATTTTGCACTCCGACGACGAGCACGTTCAAACCCGGGAAACGAATCGAGGACGCTTGCACGGTTGCAGACGCCGGACCGATACCCGGAATGGCACCATCGGAATTCGAAGCTCGCATGGTCGAATACGTGAAGCTTCTGAACAAGGAATTGCGAACGTCGACGACGACGCCGCCCAGCATTCGGCAGGGGTCAAATTCGCCTCCTTCTTCGACTTCGCCCAGGGAAGCCTTAAGTGCAATCGAAATGTCTAGACTAACGCTTTGGAATCTGTACAACAACAACCATTCTTCTTCCACTCCGGAGCCCCAGAAGGAAGCCCTCGACTTGGGAGTGAAAGAGCAGCAGCCGGCACAGAGACAGCCGTCTCCGCAGGTCAAGAGGGATTTGCAAGAGCCGGTCTCAAACGGGCCGCCGGGCAAGAAACTGCTGTCGGAGGTGAAGGATGAGGGGGAGGAAGAAGGGAAGGAGGAGAGGGATGATGCTGAGGCTGGGGCGGCAGCGAGGACGAGCGCAAGCGGAGTCCCCAGCGGTGCCCACATCAAAATAACCAGCAGGAGCGAGGGAAGAGGTCAGGAAAACTCCCTCGTTGTTAGTATGGACATTAATGGGGTGATGTACCAAGGAGTGTTGTTCGCTCAGAACTCGACCAGGAGTCGATCTTCGTAG
- Protein Sequence
- MPRRDLRTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPSELQAAIDGNRREGRRSSYGTYPELMQRSPGPTHPSQMSPLGLANQLRPQINGNGHLHHPVLHPTLGQPPLPGRFEEGFPGPLLRKRRHSEHFNRDLKSTARNRPRQLATVQAPIPRIEAVLGFVCCHCASRLAGETFLFLLLRGDHLRAFRRPLASRSTPLLLGLIRISGRDDGREVWGFTKCQSMTLNILANSLFRSSITPVVSGLAPSTNSCNVPSLYITLTVLISHCCFRVFLPPIPVFVARLPFDRGFCTPTTSTFKPGKRIEDACTVADAGPIPGMAPSEFEARMVEYVKLLNKELRTSTTTPPSIRQGSNSPPSSTSPREALSAIEMSRLTLWNLYNNNHSSSTPEPQKEALDLGVKEQQPAQRQPSPQVKRDLQEPVSNGPPGKKLLSEVKDEGEEEGKEERDDAEAGAAARTSASGVPSGAHIKITSRSEGRGQENSLVVSMDINGVMYQGVLFAQNSTRSRSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -