Rfer004956.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- stc
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000084.1:207395-214344[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.8 2e+04 -4.0 1.6 15 19 289 293 288 293 0.81 2 14 0.14 1.6e+03 -0.5 0.2 4 10 322 328 321 328 0.94 3 14 2.5e-06 0.028 14.8 13.4 4 18 337 351 335 352 0.93 4 14 3.9e-05 0.44 10.9 15.9 1 19 388 406 388 406 0.96 5 14 7.3e-08 0.00083 19.7 12.1 1 18 446 463 440 464 0.93 6 14 2 2.3e+04 -5.0 3.3 6 10 494 498 492 499 0.75 7 14 2.6e-08 0.0003 21.1 14.9 1 19 504 521 504 521 0.99 8 14 2 2.3e+04 -5.2 2.0 6 10 551 555 551 555 0.95 9 14 0.0019 22 5.5 9.6 1 11 561 571 561 572 0.96 10 14 5.5e-11 6.2e-07 29.6 12.9 1 18 588 605 588 606 0.97 11 14 2 2.3e+04 -5.1 2.3 15 18 635 639 635 640 0.53 12 14 0.013 1.5e+02 2.9 15.3 1 18 645 661 645 662 0.87 13 14 1.9e-07 0.0022 18.3 16.9 1 18 698 716 698 720 0.96 14 14 0.0022 25 5.3 16.0 1 18 727 745 727 746 0.89
Sequence Information
- Coding Sequence
- ATGTCACATACTGGGTCTAATGAAGCATCTTCATCAACTATGAGTAATGTTACTGAGTTTAGACAAAATGAAGTTTCATTTGTTTCGAATCTACAGCCAACTGCTCCAGAATATATTCCATCAAGTAGTCGTTCAAAAACTGGGGCAGTAAAGAAAACTTTTACAAGGCATAAtagaaatgttaataaaattaaaatgtctaaattaaGATTAGACGAAATGGATAACAGAGATTCAGATGAGTTAAGTACTACCTTTCCTAATAGTACAGATGCAGATGATAAAAAACAGCATGATAAAAAGTTAAGATATGatagaaaatcatattataaatataatggttATCAAGaagatagaaaatataataattatgaacaagaaaaaaatgataatcATGTCACAGTTGAAAATGTTGGTTTTTATAACAAAAGAGATGATTATGGatatacatttgataaaaaGGATAGATATAGTAGGCCATCTTCTAAATATGATAGATTTAGTCAAAGAAGCAACTATAGAGATAGACAAGTGTCTTCTAGAATTTATAATTCAACTAGATTTGAAGATTATCATCATTCTAggaaaaaacaaaatgattttaatcacTCTAATAATAGGAATAAACAAAGGAATGGAAAACATGAAACTTTGCCAGTAGAAATTCTTAAAGAtgcTAATATTGCAGGACAGAGGGAGAGATTGATTGATATGATAGATTGTTATGCTTTAGAATGTCTAGTTTGTTGtgataaaattagaaataatgacAAAACTTGGTCATGTTTGCAGTGTTTTCATATTCTTCATTTAAACTGTGTAATTGCTTGGGTAAAATCTTCAAAgGTTGAAGAAAATTGGAGGTGTCCAGCTTGCCAGAATTTATATACAGAATCCCCAAGTGATTATAGATGTTATTGTGGTAAAATGGTAAATCCAAAGTTTGATCCAAATATTATTGCCCATTCTTGTGGTGATGTATGTttaaagaaaggaaaaaattgTGATCACAAGTGTAATATCTTGTGCCACCCAGGTCCTTGTCCAGAATGTAATGTAATGGTTTCTAAACCATGTGGTTGCGGGGCTACTCAGCAGGTTGTAAAATGTAGCTCTGAACAAAAATTTGTCTGTAATGAttactgtaaaaaattattaaattgtggAATGCACACATGTACAGAGAAATGTCATACCGATGATTGTAAGTGTTGTCAGCAGGTTCTGATACAAGAGTGCTATTGTGGAAAAACTGGTAGaaagGTACCTTGCAATGCTGAACATCaaggaaatttaaattttgggtGTGACAATTTATGTGGAAAGTTGTTATCTTGTACAAATCATAAATGCATGAAACTTTGTCATTCTGGGCCTTGTAACGAATGTGACAAAGACATACATTTGGTAAAGTATTGCTGTTGTGGTAAGACACTTTTAAAAGAGGAGCGAAAATCTTGTTTAGATCCCGTTCCTTGTTGTAAACAggtatgtgataaattattaaaatgtggtCATTATTGCAAAGAGGTATGTCATGAAGGAAAATGTCCTACATGTCCACTAAAAAAATTAGTTCGTTGTCGTTGTGGAAATTTAAATAAGGAAGTGACTTGTGATGAATTCATTAATACCTCTGGAGATGTGATATGTGAGAAAAAGTGTACCAAGaaaCGCCTTTGCGGCAAACATAAATGCAATCAGAAATGTTGTATTGAGATTGAGCATATTTGTATGTTATCTTGCAATCGATTGCTTACTTGTGGAATTCATAGATGTGAAAGAACATGTCATTCTGGGAGATGCCCACCTTGTTTGGAAACAAGCTTTGAAGAATTGTATTGCGAATGTGGATTTTCTGTAGTCTACCCACCTGTACCATGTGGAACAAAGCCTCCAATGTGCCCAAAACCGTGCTCAAAGAGCAGAACTTGTGGTCATCCTCCTAATCATGAATGTCATCCTGGTTCATGTCCACCTTGTTTTGTATTGACCAAGAAATGGTGCTATGgAAATCATGAAGAACGTTCAACTATTCCTTGCAATCAGGAAAATTTTAGTTGTGGTTTACCATGTGGTAAACCAATGCCATGTGGATATCATAAGTGTATAAAACCATGCCATGATGGTGAATGTCCACAGCCTTGTATACAACCATGTTTAGTGCCGCGTAACTTATGTGGCCATCCATGTAATAAACCATGTCATAAACCACCATGCCCAGAAAGTAATTGTAAAAGTCCTGTACTTGTAACTTGTCAATGTGGTTTGCAAAAAGGCACTAAAATCTGTCTAGATTTGTTAGATGAATATATGAATTTGGAGATGGctcaaataaaagataaaattgatcaaaatgGGGATATTTTACTAGCAAATATAAAGCCAAATAAGGTTTCTGCTATGAAAGTGTTGGAATGTAATGATGAATGTAAAATTTATGAACGAAATAGACGCCTTGCTATAGGGCTGCAGATTCGAAATCCAGATTTATCACAGAAATTGACACCAAGATATTCCGATTTTTTGAAGCAGTGGGCCAAAAAGGACCCGAAATTTTGTCAGAGAATTCATGAAAAACTCACAGAGTTAGTACAATTGGCTAAACAAAGTAAACAAAAGAGTCGATCTCATTCATTCGAATCAATGAATAGAGATAAAAGACATTTTATTCAtgaatattgtgaatattttggCGTTGATAGTGAGGCGTATGATAAAGAGCCTAACCGAAATGTAGTTGCAACTGCAATTAAAGACAAATCATGGTTACCCAGTATGAGTTTGTTAGAAGTATTCCAAAGAGAGAATGGTCAAAGGAAAGTACCTGGGCCTATTTTGGGTTATGGAGCAACAACTTACTCAGAGAGTGTTTCATTAAAAGCTTtgacaaaaacacaaaaatga
- Protein Sequence
- MSHTGSNEASSSTMSNVTEFRQNEVSFVSNLQPTAPEYIPSSSRSKTGAVKKTFTRHNRNVNKIKMSKLRLDEMDNRDSDELSTTFPNSTDADDKKQHDKKLRYDRKSYYKYNGYQEDRKYNNYEQEKNDNHVTVENVGFYNKRDDYGYTFDKKDRYSRPSSKYDRFSQRSNYRDRQVSSRIYNSTRFEDYHHSRKKQNDFNHSNNRNKQRNGKHETLPVEILKDANIAGQRERLIDMIDCYALECLVCCDKIRNNDKTWSCLQCFHILHLNCVIAWVKSSKVEENWRCPACQNLYTESPSDYRCYCGKMVNPKFDPNIIAHSCGDVCLKKGKNCDHKCNILCHPGPCPECNVMVSKPCGCGATQQVVKCSSEQKFVCNDYCKKLLNCGMHTCTEKCHTDDCKCCQQVLIQECYCGKTGRKVPCNAEHQGNLNFGCDNLCGKLLSCTNHKCMKLCHSGPCNECDKDIHLVKYCCCGKTLLKEERKSCLDPVPCCKQVCDKLLKCGHYCKEVCHEGKCPTCPLKKLVRCRCGNLNKEVTCDEFINTSGDVICEKKCTKKRLCGKHKCNQKCCIEIEHICMLSCNRLLTCGIHRCERTCHSGRCPPCLETSFEELYCECGFSVVYPPVPCGTKPPMCPKPCSKSRTCGHPPNHECHPGSCPPCFVLTKKWCYGNHEERSTIPCNQENFSCGLPCGKPMPCGYHKCIKPCHDGECPQPCIQPCLVPRNLCGHPCNKPCHKPPCPESNCKSPVLVTCQCGLQKGTKICLDLLDEYMNLEMAQIKDKIDQNGDILLANIKPNKVSAMKVLECNDECKIYERNRRLAIGLQIRNPDLSQKLTPRYSDFLKQWAKKDPKFCQRIHEKLTELVQLAKQSKQKSRSHSFESMNRDKRHFIHEYCEYFGVDSEAYDKEPNRNVVATAIKDKSWLPSMSLLEVFQRENGQRKVPGPILGYGATTYSESVSLKALTKTQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -