Rfer018069.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- -
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000023.1:2319281-2326148[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00014 0.011 16.5 0.4 1 23 385 408 385 408 0.96 2 13 0.00061 0.048 14.5 4.6 1 23 532 555 532 555 0.96 3 13 0.024 1.9 9.5 1.6 2 23 562 584 561 584 0.93 4 13 0.0025 0.2 12.5 3.6 2 21 674 693 673 694 0.93 5 13 0.0099 0.77 10.7 0.9 2 23 706 728 705 728 0.94 6 13 0.17 13 6.8 0.9 1 23 731 754 731 754 0.95 7 13 5.9 4.6e+02 1.9 0.7 2 23 760 781 759 781 0.93 8 13 0.026 2 9.3 0.4 1 23 785 808 785 808 0.97 9 13 1.3 1e+02 4.0 0.1 2 20 815 833 814 834 0.93 10 13 0.024 1.9 9.4 0.2 2 23 846 868 845 868 0.95 11 13 4.1 3.2e+02 2.4 5.1 3 23 1047 1068 1045 1068 0.94 12 13 0.26 20 6.2 0.3 2 23 1075 1097 1074 1097 0.94 13 13 0.5 39 5.3 0.9 1 23 1110 1132 1110 1132 0.95
Sequence Information
- Coding Sequence
- atggaTACTCAGCTTTGTATAATATGTGGAAAATCTGgtaataattttgcaaatatttttaaaactataggATTGAAGCACAAGATAGAAACTTGTTTACCTATTATACTAACACCACATAACTTATTACCTGAAAGTATATGTACAGAATGTtacaacaaaattgaaaatttttatatttttacaaaaaattgccttcaaaacataataatattagaatCAAAGTTTGATGTGGAAGATTCCTGTTtgaaaagtaaaagaaaaaagGATAAAAGTTGTATTGTTTCACTTTccctctctaatgaaagtaaatgcATTCAAACTGAAGATTTTTTGGATCTACTATTgggaaataaaaatgatataaactaTAGATTTCCATTAACAAGTAATTTtctcaatgaaaataaatctaaatcatTTCCAGTGTTAGTGGATTATGATGTGTTATCTGATTCAAATTCACAAGAGTATGATGATCAGTTAAATCAGGGACAAGTTATTTTAGTTGAAAATCAAttgctaaataattttaacttgactgaatttatttcaaatgaatCAAGAGAACCACATGTATTACCACAATCAATGCCAAATTTAATGGAAGAAATATCAGAAAGAAGTAATGGAAGAAAAAGGAAAAGTCAATTCATTGAAAATAGCTTAACAAAAATATGCAGGCTAGAACCTGTAACTAGTAGAAGAAAAAGTAAACAGCCTAAAAAGTTAGAATATTCCATTCAATTTAATAATGATACATCTGTTAATATGCCTatagacaatattaaaaaagaatatgaaGATATTACATCAAGTCATGCACATGAAGATTTTGCACCTAATATGTATTCTGAACATAACAAAACTAACCATTCAataaattcattattattatttcaaacatgTCTTTTGTGTAAAGTACAACTTCAAAGTACCGAAGCATTAATATCACACTTTGTTGAAGTCCATGTAAAGGAATACATTCATGGAGAACAAGCTCTTCAGCATAAtgatttggattatttatcattaggaaaaaagaagaaaagtttACCTAATTTGCTAAAAATTTCAGATTTAAAATCCACAGATTTACCTGaTGATAAATTATCAGACAATAGTACAAATTCAGCATTAGCGAATTACAATTTTAGTTGTCCTAATTGTCCAGCTACATTTTCCAACAGAAATGAATTATTTCTACATCTACAACTGAAACATTTTGATACTCCTATATATTTGTGTGGTATATGTTTGCTTCAAGTTAGCAATATTACAAAATTGAAGGAACATGTGGAAAAGTGTATTTTAGATCACCCTATTTTGACAAGATTCTACTGCCAAGTATGTTATTTTGGTGATGATAACTTCAAGGTAGTCGAAAACCATATTTTATTgcacaattttttgttaaaaatatgtcgaAAAGAGGTAAAAAATTTTGACCCAGAAGATTATATTTGCATAAATGAAAAGCCAAAGCAATGTGATGCGTCACCCGTAAAGTATTTTAGCTGTTTCGAGTGTAGAAAGTCtaattttgatacatttaaaaaattttcatttcatcgAAGGAGCATTCATTCTATATTTCACTGTGATTTATGTAATAAGttttatgGCAGAAATTCTCATTTGTGGAAGCATGTTAATCGCTTGCATAAAGGTCACCCGAGTATTACTTGTCAAATGTGTTTTAAAACAAGCGCGTCAAAATATCATTTGGctcagcattttgctaagatacaCCAAATGAAGACTGCGTTAAAAAATGATGACAACTATATTCCTAGTTCTATTAAcattgacaaaaataattacacagatattttatcaaaacagGAAAGTGAAGAAGATAACACAGATTGTGATGAAAATTCGTCAGATAGATATTCTGCTCAAGAAAATGAAGATTCATCCGAACCTAAAGCTGCTCCTAAAGAAATAGACCCTTCACATAATatgtataacaatataattactaattatacaCCACCCGCTGGAGAAGGTGCACTAAAATGCCCTAAATGTTCAAAGACGTTTcacaaaaaagtattattaaagaAACACAAGAAGAATTGCAGACCCAGAATGCAAAAAGATTTACTAACTAGATGCAAATCTTGTGCTAGAATCTTCAAAGATAGGCAAAGTCTTGCTAAGCATTTGATAAACTATCACTCTGATTATGTTTGTGAAATATGTAATGAAAAAGTTCAAAGCAAATGTGAGATTGTCAGCCATATTAGATTTCAGCATCCATCCAGTCATTTGGTTTGCACTATTTGTGAAAACATATTAAGATGTCAGAAAGATTTATTAGAACATTTAAGAGATCATGAAAATTCTTATGTTTGTCAATTTTGTGGCGATACATTATCCAGTAAAataaaattaaaaatgcatatattaagtTTACATCGAAAAATACTCAGTTTAAGCTGCGGCATTTGTTTGAAGCTTTTTGAAAatcaaaaagttttaaaagacCATGTTACCTGTATACATAAAAGTCAATTAGATCCTTTAACATCTTGTCCTGTATGCGGTAAAAATTATGGATCCAAATGGAAAGCATATGATCATATTAATAAAAGCCATGGTACTACATTCAAAGCCTGTAAAgtatGTCTAGAGCTATATGAATGTGATACTCAGTTAGAGATTCACATGAATCTAGTCCATGTAAATCAAACAGCTGTGACAAATTGTACAGGAAAATCCACTATTCAATTAAACAATGCAAACGAAATTAATGATTTACATtttggaaataatcaaaaaaccaTAGAGACCGATAGTGATGAAAATTctgatgaaaatgaaaataatagtaataattctaGTGACAGTGAAGatggtgataatgaaataaatgaacTGAGTGAAGAGCAGCAACTATTTTTAGAACAACAATGTACAGATATTCAAAATCCAATTGTTCCATCTTTTCCTTTGTTAGAAAATCAAGTATTAGACTACAAAGATGCATATGACGTTAATTCTGATGGTGATGATGTTGAGAAGCAAAAACTAATTCaagacAGACATAAGAAAATACatataactgataaaaataatcttaccaATCATTCAAAAAGAACTGTGTATGTTAATAGTAACGATCCATCTTGTTGTGAAATTTGCAATAAAACATGGCCtgctaaaaaacatttatggCAGCATTATATaagATGTCATAAGCAAGTTGCAGCTACTGTATGTGGAATATGCTTAAAGACTAACAAGAACTATGAAAGTCTTCAAATTCACCTGAGAGATACACATCCGACTTTACTTCATGGTCAAGGCTttggttcaaattttatttgtagGATATGTGGAaggtaTCACAACGCTAGTTCAAAATTGAGACTTCACATGGTAATTCACGAAAATTTTGATTGGAAATTGTTGGACAAATTTCCTGAAATCCCAAGATATATTAATACAGAATCTCAAAATTATCtcttgaaacaaaacaaaaaaaaatatatggaagatAGAAAAAAGTATACAAAATTACAAAGAAAGtcAAGGAAGGAAGTAAAAGTTGTGAATAAAGACGATGATATATTTGAGGAATCAATAGGACAAGTAGAACAAACTAGGACGAGTTCTGTTGGAGAAACTGACAATAACACGATATCCGCTTCTCCCAAACATACAAATGAACTGtcgtttaacaatattttacaaacacTGAAACAGCACCCTCACTTTAATATCCTCAGTGTTAAAAAAGATGCTCAAACGCAAGAAAGCAATATTGATGGAAGGAATGAAATAAAGCCCAATCAGAAAATTGAATCAGATATAGATAATAATGAAATGACAGACTTAAGTAACGCTAGTTCATCTAGTGCATCCAATCAAGACCATAAAAATAGTCGCATTTCTGATTTGGAAGATGAAGGATCTCAAAGCAGCACAGATAATGAAAATTGCCGCAATTTTTTTAGgCCTAAAGCTGAAGAACTAGATTCAGCAATAAAATCAATAAGCTATCCTAATCCTCATTATGAAGTAACAaatgaatataatgaattttctGATACAGAACAAACCATCAATTCTTTGAATGAAAACGAAATTGAGAGTGCTGTTggaagtattttataa
- Protein Sequence
- MDTQLCIICGKSGNNFANIFKTIGLKHKIETCLPIILTPHNLLPESICTECYNKIENFYIFTKNCLQNIIILESKFDVEDSCLKSKRKKDKSCIVSLSLSNESKCIQTEDFLDLLLGNKNDINYRFPLTSNFLNENKSKSFPVLVDYDVLSDSNSQEYDDQLNQGQVILVENQLLNNFNLTEFISNESREPHVLPQSMPNLMEEISERSNGRKRKSQFIENSLTKICRLEPVTSRRKSKQPKKLEYSIQFNNDTSVNMPIDNIKKEYEDITSSHAHEDFAPNMYSEHNKTNHSINSLLLFQTCLLCKVQLQSTEALISHFVEVHVKEYIHGEQALQHNDLDYLSLGKKKKSLPNLLKISDLKSTDLPDDKLSDNSTNSALANYNFSCPNCPATFSNRNELFLHLQLKHFDTPIYLCGICLLQVSNITKLKEHVEKCILDHPILTRFYCQVCYFGDDNFKVVENHILLHNFLLKICRKEVKNFDPEDYICINEKPKQCDASPVKYFSCFECRKSNFDTFKKFSFHRRSIHSIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQMCFKTSASKYHLAQHFAKIHQMKTALKNDDNYIPSSINIDKNNYTDILSKQESEEDNTDCDENSSDRYSAQENEDSSEPKAAPKEIDPSHNMYNNIITNYTPPAGEGALKCPKCSKTFHKKVLLKKHKKNCRPRMQKDLLTRCKSCARIFKDRQSLAKHLINYHSDYVCEICNEKVQSKCEIVSHIRFQHPSSHLVCTICENILRCQKDLLEHLRDHENSYVCQFCGDTLSSKIKLKMHILSLHRKILSLSCGICLKLFENQKVLKDHVTCIHKSQLDPLTSCPVCGKNYGSKWKAYDHINKSHGTTFKACKVCLELYECDTQLEIHMNLVHVNQTAVTNCTGKSTIQLNNANEINDLHFGNNQKTIETDSDENSDENENNSNNSSDSEDGDNEINELSEEQQLFLEQQCTDIQNPIVPSFPLLENQVLDYKDAYDVNSDGDDVEKQKLIQDRHKKIHITDKNNLTNHSKRTVYVNSNDPSCCEICNKTWPAKKHLWQHYIRCHKQVAATVCGICLKTNKNYESLQIHLRDTHPTLLHGQGFGSNFICRICGRYHNASSKLRLHMVIHENFDWKLLDKFPEIPRYINTESQNYLLKQNKKKYMEDRKKYTKLQRKSRKEVKVVNKDDDIFEESIGQVEQTRTSSVGETDNNTISASPKHTNELSFNNILQTLKQHPHFNILSVKKDAQTQESNIDGRNEIKPNQKIESDIDNNEMTDLSNASSSSASNQDHKNSRISDLEDEGSQSSTDNENCRNFFRPKAEELDSAIKSISYPNPHYEVTNEYNEFSDTEQTINSLNENEIESAVGSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -