Rfer001549.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- ken
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000001.1:4391386-4447808[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.2 1.7e+02 3.3 0.5 3 23 488 510 486 510 0.90 2 14 0.11 8.8 7.3 1.2 1 23 651 675 651 675 0.89 3 14 9 7.1e+02 1.3 2.4 2 21 697 716 696 720 0.86 4 14 0.00071 0.056 14.3 3.6 1 23 733 756 733 756 0.96 5 14 0.11 8.7 7.4 2.8 1 22 761 782 761 785 0.90 6 14 2.3 1.8e+02 3.2 1.3 2 23 803 825 803 825 0.89 7 14 0.00022 0.017 15.9 0.2 2 22 831 851 830 851 0.96 8 14 0.00012 0.0091 16.7 2.2 1 23 916 937 916 937 0.98 9 14 3.9e-05 0.003 18.2 1.0 1 23 943 965 943 965 0.97 10 14 0.00013 0.01 16.6 0.6 1 23 985 1007 985 1007 0.95 11 14 2.3 1.8e+02 3.2 1.3 2 23 1013 1036 1012 1036 0.94 12 14 0.0004 0.032 15.0 1.3 1 23 1042 1064 1042 1064 0.98 13 14 5e-06 0.0004 21.0 4.1 1 23 1070 1092 1070 1092 0.99 14 14 0.0016 0.13 13.1 4.4 1 21 1098 1118 1098 1123 0.93
Sequence Information
- Coding Sequence
- aTGATAGCTGATTATGATGACGATACGCATTTTTGCCTAAAATGCCACTCCACCATATTAGGCCTAGATAACTATGTTACGCATAGAAAATCTAGCTGCAACAAAACTATTCATCCAGATCCATCAAAGTCGCCTTCGCCCAGTCAGCTGTTACCACCAGACGAGATAGGCTTGAAAGCAGATGATTTCTTTTCATCCCTAAAATTGAGAAGTAGTTCCAAAAAAGTTCCTCAGTCCACATCCGGTAAAAATTTCAGTGGTATATTAACAAGAAGTAAAACCACCGCAGTAATACAAGCATGTATCAACAAAGACGCATCGGAGCCCCAACAATCGAAATCGGGGAAGAATGTTTGGATAGGTGGAAGTCAAATAAAGGATTTGGGTACAGGCGATAACcagtcaaaattaattaaagcgGTAGCAAATCTCGaacgaagaaaagaaaatgcATCGCCACCTAGATTagacgATGTCTATGAAGCTTATGATGACGACTCAGATGAGTATGAGTACGATGATGAAGAGTCATCAGAGGAAGATTATGCACCACCCAGAAATCACACAGGTGGTAAATGGAAACCATCATCACCAATTCATTGGAATAATCGAAACGACAGAGAATGGAATATTCCTCCACCTTCTTTTACAGGGGGAAAATGGAAACCAAAGCGACTCTCTTCACCTCCACCATCATATACAAAAGGTAAATGGAAACCACTTGAGGAAGATAGCCATCCATCAACAGGTGGCAAATATCCCCCACCCGGTCATACTAAGGGCAAATGGAAACCTATCCGAAATGAAAACGAGGAAGAAGACGGAAATCAAACGAAAGgaAAATGGAAAGCAAGACTCGATATAAATGAAGATAGATACCCTCCGCCATCTCACACAAAAGGGAAATGGAAGCCTTCTTCCAAAGCGGATGATAACGACGTTCCTCCTCCAACACACACAAAAGGAAAATGGAAACCTAGAGTGGATGATGACGATGCACCACCACCAACACATACTAAAGGAAAATGGAAACCTAAAACAGAAAAAGATTACGACATACCCCCACCAACACATACTAAAgGTAAATGGAAGCCCAAATCAAGTGTCATTGAATCACAAGATCTTGATATGTTAAAAGATAAATCAAAACAGTCAAAGCAAACAAGCCCAGGAACATCTTCAGTTCAAAAAGCTAAAGAAAAGCATGAAATAGCACAGAGTACAACAAGTACTTCTGGCAGTCATCTGAAGGAGAAATCACAACAAGAACAACCACCATCCCCATCAACTTATAAAGaagttaaaactttaaaaactaataaacttAAAACATCTATAAGGAAATTATCAGAGCAAAAGTCTTTAAAGAACGATGGCTGGTTACCAAGTACTTCTGGTAAAAATTTTAAGATTATGGATGACTCTCCGTTTAGAAAATCTAgcgGTACGATTCACTATTGGTGCAGTACATGCAACAGAAAGCTTGCATCTAAACTAGTATATGAACGTCACTTAAAATCAGATCTTCATTTCAAAAGAACTCGACCAGAAGGCGAATTTGATGATGGAGctacaataaaaagaaaaagactCAAAATTGAAGATAGTAATCCATCTGCAATATTCGAAGCTTCTTCAATTAAGgaaaaacCAGTGCAATTGGAGAAAAAAAGGAAACGGAAGAAGATATTCCAAATATGTACGGTGTGCCATTCGAAAGTCAAGAAATACATGATGGGCAAACATTTGATTTCTCATTATCACTGTCGAAAAGGAGATATAACGACAGGTACCGCAAAAGGCTtagttttagaaaatatctaCAGTATAATATTGGAGAGCCCATTTCAATGCTGCGTCTGCAAATTTTACTGTAACACGCACGAACAATTTTTACAGCACTGGCAATCGGATTTTCacaaagagaaaaacaaaaccTATCCAGGCTACTTTTTGTGCGCCATCTGCAAGCAACGCTGCGAAAACTCGGAGAACATGTTTGATCATTTAAAATCGCCTGAGCACCTTGAAGTCGTCTCGGTGATTAATCGTTCTGTACCGATCACAATTAAGAAAATCAATGAGCTCTCCTGCCTGACCTGTAACAATAAATTCACACTAAACATACAGCTACTAAATCATTGCAGAAGAACCGGTCATGATCAGATGAACGTGAGCGCCCTCGAGAGCGACAATTTCAAGTGCAATCATTGTAACAAAGTGTTTTTGAGCGCGATTTCATTGCAACGCCATAGAAAACTTAAACATAAAGAAAACTATTTCTTTTgtagtttttgtaaattaaaattcaagagCAGTTGGGAGGCAAAAAAGCATCGGATGTCTTCCTCACACAGGTACGCAAcattagaaaagaaaaaaccaaAGGATGGCAATTTACGCAGGCAATGTGAACATTGTAAGGAGTACTTTGCGAATTTCTTAATCCTGAAGGAACACCTAAAGGAAAGCCATCCGGAACATAAAATAAGATGTCCTCACTGTGGAGAAAGATTTATTGTGACCCAAGAATTAACTAACCATCTTCGAACAAAATCTTGCAAATTTTCTGATAATGCCGAAACAAGCGAAGATGCTCTCAAATGCGAAAAATGTCCCTTTAAGTCTGATTCTACTGCCGAACTATTGTTTCATGTGGCCCTACACGATGAACCTCTGGTCATCAATCCATTGGAGTTCTTGGAATTGACAGatAACGACGTCAAGGCGAAacccattataaaatataagtgtCCTTTATGCGATAAATTTTTCCCAAAACACTCGTTACAGGCTCATTTGAGGTTGCATACTGAGGAACGACCCTATGCTTGCAAGATTTGCGATGCTACATTCACTCGAAAGAACAATTTGCTGTACCATGAAAAGAACCACGACAAGAAAGACAAATCGAAGCCGAAATCACAAACACAAACTCCCGGTGAAAAATCCTTCCTGTGTTCGACTTGCGGAGCGGGCTTTGGCAGAAAattcacACTACAGCAACATATGTTAACGCATAGCGGTAAAGTATGTCGATGTCCAGAAGAAGGTTGTTTCTACACAGCCAGAAAAATGAGCGAGCTCGAAGagcattttaaatatcataGCGATGAGAAAAATTATTCATGTAATGTGTGTGATTACAAAGGAAAAACTATGAAGCAGCTGAAAAGACATCAGTTAGTACACGAAGATAGTAAGCGATACCAATGTAGTATATGTGACTTCAAAACTCGAACATCATCACATCTGAAAAGACATATTAGATTACACACTGGTGCTAAACCATTCAATTGTCCCCACTGCAATTACAAATGCAATagtttggaaAATCTTAGGAAACATATTCTCTCAACCACGAAACATCCTGGTAAATGTATCTATGAATGCAAATTTTGTACAAAGTCCCCACCATTCGAGACCAATTTTGCTAAAGATTTCAAAAACCATTTATTACTGGAACACGAGAAAATGTTCTCAAACAGCAAAGATGCAGCTTCCTACATTGTAGGAATATATGAAGCTCAAGAGGATACTACCTACTTAATCAACACAGTTGATGGAATGGAACCACCAGAGTCAAGTGAAAGaatTAATACCAAATCGGATGCGAACGAATGTATTTTGAGACTTAAAACTAATGAGGACCCGGTGGTTGCGCAATTGATTACGACCACTGAGCTAACCAACAAAGATCGCACATTAGATCAGATGCTACCTATGTTTATTATACCGAAAGGTGATCAAGGGAATATCGATGCAGCATCAGATTCCTGGAATCTTATCGGTCAATATGACGTTGAGGAATCGGGAACACTTGTACCGTTCCACAGTGAAGAAGACCAACTATTCTTAGTGTAA
- Protein Sequence
- MIADYDDDTHFCLKCHSTILGLDNYVTHRKSSCNKTIHPDPSKSPSPSQLLPPDEIGLKADDFFSSLKLRSSSKKVPQSTSGKNFSGILTRSKTTAVIQACINKDASEPQQSKSGKNVWIGGSQIKDLGTGDNQSKLIKAVANLERRKENASPPRLDDVYEAYDDDSDEYEYDDEESSEEDYAPPRNHTGGKWKPSSPIHWNNRNDREWNIPPPSFTGGKWKPKRLSSPPPSYTKGKWKPLEEDSHPSTGGKYPPPGHTKGKWKPIRNENEEEDGNQTKGKWKARLDINEDRYPPPSHTKGKWKPSSKADDNDVPPPTHTKGKWKPRVDDDDAPPPTHTKGKWKPKTEKDYDIPPPTHTKGKWKPKSSVIESQDLDMLKDKSKQSKQTSPGTSSVQKAKEKHEIAQSTTSTSGSHLKEKSQQEQPPSPSTYKEVKTLKTNKLKTSIRKLSEQKSLKNDGWLPSTSGKNFKIMDDSPFRKSSGTIHYWCSTCNRKLASKLVYERHLKSDLHFKRTRPEGEFDDGATIKRKRLKIEDSNPSAIFEASSIKEKPVQLEKKRKRKKIFQICTVCHSKVKKYMMGKHLISHYHCRKGDITTGTAKGLVLENIYSIILESPFQCCVCKFYCNTHEQFLQHWQSDFHKEKNKTYPGYFLCAICKQRCENSENMFDHLKSPEHLEVVSVINRSVPITIKKINELSCLTCNNKFTLNIQLLNHCRRTGHDQMNVSALESDNFKCNHCNKVFLSAISLQRHRKLKHKENYFFCSFCKLKFKSSWEAKKHRMSSSHRYATLEKKKPKDGNLRRQCEHCKEYFANFLILKEHLKESHPEHKIRCPHCGERFIVTQELTNHLRTKSCKFSDNAETSEDALKCEKCPFKSDSTAELLFHVALHDEPLVINPLEFLELTDNDVKAKPIIKYKCPLCDKFFPKHSLQAHLRLHTEERPYACKICDATFTRKNNLLYHEKNHDKKDKSKPKSQTQTPGEKSFLCSTCGAGFGRKFTLQQHMLTHSGKVCRCPEEGCFYTARKMSELEEHFKYHSDEKNYSCNVCDYKGKTMKQLKRHQLVHEDSKRYQCSICDFKTRTSSHLKRHIRLHTGAKPFNCPHCNYKCNSLENLRKHILSTTKHPGKCIYECKFCTKSPPFETNFAKDFKNHLLLEHEKMFSNSKDAASYIVGIYEAQEDTTYLINTVDGMEPPESSERINTKSDANECILRLKTNEDPVVAQLITTTELTNKDRTLDQMLPMFIIPKGDQGNIDAASDSWNLIGQYDVEESGTLVPFHSEEDQLFLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -