Rfer009107.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- -
- Assembly
- GCA_014462685.1
- Location
- JAACXV010014605.1:743300-747179[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.48 37 5.4 0.9 1 21 54 74 54 75 0.93 2 16 0.0002 0.016 16.0 6.8 2 23 88 110 87 110 0.95 3 16 5.1 4e+02 2.1 0.9 1 20 115 134 115 136 0.93 4 16 0.057 4.5 8.3 0.3 1 23 145 167 145 167 0.98 5 16 0.00026 0.02 15.6 1.0 1 23 179 201 179 201 0.98 6 16 0.019 1.5 9.8 0.6 1 23 208 230 208 230 0.97 7 16 0.025 2 9.4 0.3 2 21 240 259 239 260 0.93 8 16 0.11 8.8 7.3 5.6 1 23 294 317 294 318 0.91 9 16 0.00073 0.057 14.2 1.8 1 23 336 359 336 359 0.97 10 16 0.02 1.6 9.7 0.2 1 21 387 407 387 410 0.90 11 16 0.004 0.31 11.9 0.1 1 23 592 614 592 614 0.95 12 16 6.7 5.3e+02 1.8 3.6 1 23 646 669 646 669 0.95 13 16 2 1.6e+02 3.4 0.0 1 14 719 732 719 733 0.91 14 16 0.061 4.8 8.2 0.2 1 23 785 807 785 807 0.96 15 16 0.023 1.8 9.5 2.3 1 23 863 885 863 885 0.97 16 16 0.43 34 5.5 1.6 2 23 901 922 900 922 0.94
Sequence Information
- Coding Sequence
- atgaattacgAGGTCTTTGGATTTAGAGATGAATTTACTGATAGTGATGAAGAATATAAAGACGAGGCTAACCTTAGCAGCGCTGAAGATTGTGAACGCCACTCAAATTCAATTATCACAGGAAAGAAAAGATCGGACAAATGTCTCTCggtaaatattttccaatgcAGTTTCTGTGGTTATCAAACTCCATTTCGATACATACTAAAGAGACATTATCAAGGATGTCAAATGAAATCTGGTCCCATCAGCAGAGTATGGGAATGTTCCAAGTGCAAAAAAGTATTTCCACACCACAGTCACTTGAGGCGACATAAACTAAAAGTCCACAAATCACAGATTTTTTCTTGTCGTAATTGTCTGCTTGAAACAACTGATGAAAAGAACTACAAGTCTcattttattaaagataaatgTCCGAAGAAAAAAATGTACCAATGTGAAAAATGTCCCTATAAAGCTAGTTCCAGAGCGAGAGTGATAGACCATGAAAAGACTCATAATCCAAACAGACAAGGTGTCTCAAAAAAGAATTTTACTTGCACGGAATGCAATCGTGTTTTGGCAACTTTGAAGCTATATAAAAGGCATTTAATGAGTCATAGTTCAATAAAGAAGAATTATTGTTGTGAATACTGTGATTATATCACAGAAGACTTGGATAGTTTAGATGAACATAAAATGATACATCCAAATGTTCGTGAAATGCTTCTGGTTCAATGCAGTCGCtgtgatttgaattttttcaatttaaaagaaCTTAAAGAACACCTTGAGCGTGATGCTTGTACAAAACGGAAAAGGACAGCTCGAGTAACaagtagtactaaattaaaaaaagaaaaagcttCGGAAGTGAGTGAAGAAAGTACATTAGCCTTCACCTGTCATTTATGCCCTTATGCAACAAAACGTCTTCAATTATTAACACGGCATTGCTTAACAATTCatcatattgatatatacaagaaacaaaaattatcagCACTAGACCAAGAAAAGGGATATGTCTGTACACGATGTACATTTGTTACAAAGTACTTTAGCAATTTAACAaggcatataaaattaattcactgcTTGGGTAATAAAGGATTAGCTAATCTAAAACCTCGCCCTGCACCTAATGacaatataacagaaaaaaatgtcTCTGAGTACAAGTGTGATGTATGTGATATAGTGATTGTTGATCAATACCAGCTAGCTTAtcacaaatttgataaacacAGgGACAAAAGTGAACTACTAAAGTGGAAATTGAAATGTTCCATGTGTAAATACAAAAGTGCAAGCAAGAAATTGTGTTTCAATCATGGCAAATCTCATGTAAAAAATGCTAGCCATTCCAAAGTAACTTTTTACCAATTCTATAATGGTGAAAATAGAGGGACGTtctttattgattatattaagaataaagTGGCAATAAAAACTAAGACGGCAAAACGAGATGATTTACTTGATATTATTCAAGGAGAGAATATTGAAGAAGTACATATAGATAATGATGAAGATGAGGAAATATTACAATTCAGAGGTAAAGCTCAAACGCTAAGTTTTCTGGAGGATATTTGTGTAGAAGATGAACAGGGAACCTCCAATttgcaaaacatattagaatgGACTGCCAGTGATGATATTGATCTGGATAATGTAGAAAACACTGTTAACAACAATGAAGATGAAGTTCTCATTATAGAGGTCGTTAATGACGATATGGGTGAAAATAATACTGCGGGTACAGAGCCCGAGGATGTGACTGAAACAGTGTACATTTGTGAAAAATGCAACGCTACCATAAATAATCAATACGATCTACAAGCACATGCTGAGTTACATTCACTTGAAGAAGAGGATCCAAATCTTGAGCTGACATTTTATTCAAATCCTAAAGAATCAGATGAAAAATCTTCAGGGTGTCCggagttaatttttaattgcggTTTATGTCAATTTTGCTCGGATTCTCAGCTTTTGTTAGATAAACACCATTTAAAAGTTCATTATgccaaaaatgaaaataatgaaacgttTCCAACAGACACTAATTTAACCATTAAAGAAGAATTAGAGTCAGAACAATCAGAAGTAGATTGTGCTAGTGATATGTTATCCGCAGATAATAATGGTTTACCTAGAGGTAAACAAACATTTAAGTGTACATTATGCGAAGAAACATTAATACGAAAGTCATTGTCCTTTCACACAAATCAACATGCTGCTGAATTAAATGATCATGAGCTGGAGGTTCTGTATGAGGAATATAAGCAAAATCActttatgtatatgtatgaGGTAAGAGCTCATTCCCTTGCTGGAGAAAAACTATTCCTATTGGGTTTGCCATCTTATAAATGTAATACCTGCGGAATcaccataaatataaaaaagaacattaaaGAGCATGCCAGCGTACACACAAAAGAAGAGAACAATCCTAATTTGAAGGTGTCATTTTCGGAATTTCGAAGCGATAAACTTATTGGTACCATAATTACTACTGGGTTGCCGTCAACAGTTCGGCAACTGGAGAATCGAAACACTACTCCCTGCCATCTGGAATATGACCCTACAAAACCCATATATTCTTGCGACGAGTGCAACTTCAAGACGAATTTTGAGAATGAATtaacaaaacacaaaaaattgCATTGGACGCACGAAAAAGATAAAGCCTATAAGGAGAAGAACTGGATTTCATGTAACATGTGCTCTTTCACTTGTTTCAATTTAGAAGCATTTAAGGATCACATAGTTAATCATAAATTCTAG
- Protein Sequence
- MNYEVFGFRDEFTDSDEEYKDEANLSSAEDCERHSNSIITGKKRSDKCLSVNIFQCSFCGYQTPFRYILKRHYQGCQMKSGPISRVWECSKCKKVFPHHSHLRRHKLKVHKSQIFSCRNCLLETTDEKNYKSHFIKDKCPKKKMYQCEKCPYKASSRARVIDHEKTHNPNRQGVSKKNFTCTECNRVLATLKLYKRHLMSHSSIKKNYCCEYCDYITEDLDSLDEHKMIHPNVREMLLVQCSRCDLNFFNLKELKEHLERDACTKRKRTARVTSSTKLKKEKASEVSEESTLAFTCHLCPYATKRLQLLTRHCLTIHHIDIYKKQKLSALDQEKGYVCTRCTFVTKYFSNLTRHIKLIHCLGNKGLANLKPRPAPNDNITEKNVSEYKCDVCDIVIVDQYQLAYHKFDKHRDKSELLKWKLKCSMCKYKSASKKLCFNHGKSHVKNASHSKVTFYQFYNGENRGTFFIDYIKNKVAIKTKTAKRDDLLDIIQGENIEEVHIDNDEDEEILQFRGKAQTLSFLEDICVEDEQGTSNLQNILEWTASDDIDLDNVENTVNNNEDEVLIIEVVNDDMGENNTAGTEPEDVTETVYICEKCNATINNQYDLQAHAELHSLEEEDPNLELTFYSNPKESDEKSSGCPELIFNCGLCQFCSDSQLLLDKHHLKVHYAKNENNETFPTDTNLTIKEELESEQSEVDCASDMLSADNNGLPRGKQTFKCTLCEETLIRKSLSFHTNQHAAELNDHELEVLYEEYKQNHFMYMYEVRAHSLAGEKLFLLGLPSYKCNTCGITINIKKNIKEHASVHTKEENNPNLKVSFSEFRSDKLIGTIITTGLPSTVRQLENRNTTPCHLEYDPTKPIYSCDECNFKTNFENELTKHKKLHWTHEKDKAYKEKNWISCNMCSFTCFNLEAFKDHIVNHKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -