Rfer018974.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- -
- Assembly
- GCA_014462685.1
- Location
- JAACXV010014327.1:7653-9909[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0015 0.11 13.3 1.2 2 23 118 140 117 140 0.91 2 13 0.0034 0.26 12.1 2.7 2 23 193 214 192 214 0.97 3 13 3.1 2.4e+02 2.8 0.1 2 23 218 238 217 238 0.86 4 13 0.0079 0.62 11.0 0.7 2 23 244 266 243 266 0.95 5 13 2.9 2.3e+02 2.9 1.8 3 23 279 300 277 300 0.90 6 13 0.0087 0.68 10.8 1.9 1 23 320 342 320 342 0.95 7 13 0.011 0.89 10.5 0.9 2 23 346 366 345 366 0.96 8 13 0.01 0.78 10.6 2.0 3 23 373 394 372 394 0.93 9 13 0.0029 0.23 12.3 8.5 1 23 399 421 399 422 0.96 10 13 1.8e-05 0.0014 19.3 6.6 1 23 428 450 428 451 0.94 11 13 0.0029 0.23 12.3 2.5 1 23 457 479 457 479 0.94 12 13 0.0016 0.12 13.2 0.5 1 23 485 508 485 508 0.92 13 13 2.3e-05 0.0018 18.9 2.3 2 23 517 539 515 539 0.93
Sequence Information
- Coding Sequence
- atggatattttaaatgtatgccGATTGTGTGGAAAGGAAAAATCGTTCTTATTATCTCTATTAGAAAATGGTGGTAATACCTACATGAAATCTCTAATTAATGTTGAAattGACGAGAAAGATGGTCTGCCTAAAAAAGCCTGTATGATTTGTTGGAATAGCTTAAAACAAGCTTATTATATTCAGCAAAATTTTAAAGAAGCTGATAGATTATTACATGAAAAATGCAATGGCTCAGAGATTACCGTGATTAAAATAGGGAGTGATAGTAAGAGTTTATTGATTACTAAGGAAAGACACAATGAGAATTCACCTACTGAATCTGAGGGGTATAAaccaatcattaaaaataaatgtgccATGTGTggaaagcaatataaatatttaactactCTTAAAAGGCATTTTATATTACAACATGCAGACAGTTTTGgtaataaaaataccaaaaatgaaGGAACATCTGCAGTATTAAGTAATAATCATAGTacagaagaaacaaaatatcatGAAACTAACATGAATATAGCTGGAGATAATGATGATTGCATGTCTAAGAAAGAAGTAAATGAACTGAAATGTACAGAATGTAGtaaaatatgtagtaataaaaatgtactCCTTGCTCATAAAAGAAATCACATCCAAATGGAGTGCACAGTGTGTGGAGCAAAAGTTGGTAGATACTACTTACCCATCCACATGAAAAGTCATACCGATGGTTCACAGAAGTGCCCTATTTGCCaacaagtattaaaaaataaaagaactctaaAATTTCATATAGATACTGTTCATAATTGCAATACCAATCATACTAATAGTCAACAGatctGTTATGTATGTGGAAAGAATCTTAAATGTGCGAGGATATTAAAAAGGCATCTaagaaatttacataaaattggTTATACAAAACTGATATCGAAAGAAACCCCATCATCAAGTCCCCTAGAGTACCAGTGTTCGGAATGTGGCAAACAGTTTTTGGACCGTCAAAAATACATATCCCATTTTAATAATCATCGGAAAAAAGAATGCCCTATTTGTAAACAAACTGTATCTCGTTTTAATTACACCAAACACGTTAGATTACATTCGGAAGGTCCGGAGAATTGCAGATTGTGCGGCGTCACTTGTAAAAACAGCGAAAGTTTAAGAGGACATATGTATTATACTCACAGTACCAAGGAATACACATGTAGCACATGTGATAAGTGTTTCAAAAgcaatttttatagaaaaatgcaTATAAAGCTTCATCATACAGgagaAAGAAATCATATCTGCGATTATTGTGGGAAAGGTTTTATCACTTTGCATCACCTAAAAAGCCACATCAAAATCCACCATTCTCAATCCAAGCCATACACCTGTATTAGTTGTGATAAATGTTTCACGAACATCAAAGCCCTTTTACAACACGAGCGTAGACATTCGCCGGAAGGTAATTATACCTGTGGTATATGCCTGGAAAAGTTTGCGAAAAAAACTGATCTACGAACTCACAAGTCAGCACTACATAAAATTGTAGAGATGAAGAGATGTGAGTGTATGAAGTgtgggaaaatattttctagcgAGTTTGCTTTAAAGAAACATATACAAAGCAATCATGGGAATATAGAAAATCCTGGTGAAAACTGTCGAGAATCACAGTTAACTAATAATTTGGTCAGTAAAAAGTGA
- Protein Sequence
- MDILNVCRLCGKEKSFLLSLLENGGNTYMKSLINVEIDEKDGLPKKACMICWNSLKQAYYIQQNFKEADRLLHEKCNGSEITVIKIGSDSKSLLITKERHNENSPTESEGYKPIIKNKCAMCGKQYKYLTTLKRHFILQHADSFGNKNTKNEGTSAVLSNNHSTEETKYHETNMNIAGDNDDCMSKKEVNELKCTECSKICSNKNVLLAHKRNHIQMECTVCGAKVGRYYLPIHMKSHTDGSQKCPICQQVLKNKRTLKFHIDTVHNCNTNHTNSQQICYVCGKNLKCARILKRHLRNLHKIGYTKLISKETPSSSPLEYQCSECGKQFLDRQKYISHFNNHRKKECPICKQTVSRFNYTKHVRLHSEGPENCRLCGVTCKNSESLRGHMYYTHSTKEYTCSTCDKCFKSNFYRKMHIKLHHTGERNHICDYCGKGFITLHHLKSHIKIHHSQSKPYTCISCDKCFTNIKALLQHERRHSPEGNYTCGICLEKFAKKTDLRTHKSALHKIVEMKRCECMKCGKIFSSEFALKKHIQSNHGNIENPGENCRESQLTNNLVSKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -