Rfer016761.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- -
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000237.1:125762-131091[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 1.1 89 4.2 6.0 1 23 19 41 19 41 0.97 2 18 0.45 35 5.4 4.7 1 23 78 100 78 100 0.98 3 18 0.0006 0.047 14.5 3.7 1 23 214 236 214 236 0.98 4 18 0.0037 0.29 12.0 3.5 1 23 256 278 256 278 0.98 5 18 0.065 5.1 8.1 2.6 1 23 292 314 292 314 0.98 6 18 0.016 1.3 10.0 0.2 2 23 358 380 357 380 0.95 7 18 0.008 0.63 11.0 2.5 1 23 452 475 452 475 0.98 8 18 0.029 2.3 9.2 1.3 1 23 483 507 483 507 0.96 9 18 0.092 7.2 7.6 2.3 1 23 520 543 520 543 0.95 10 18 0.00088 0.069 14.0 2.3 1 23 551 573 551 573 0.98 11 18 0.00023 0.018 15.8 0.1 1 23 576 598 576 598 0.99 12 18 0.036 2.8 8.9 1.6 1 23 607 629 607 629 0.95 13 18 0.33 26 5.9 4.4 1 19 633 651 633 655 0.92 14 18 0.00036 0.028 15.2 1.8 1 23 664 686 664 686 0.98 15 18 0.0011 0.085 13.7 3.7 1 23 695 717 695 717 0.98 16 18 0.015 1.2 10.1 2.6 2 23 727 748 726 748 0.97 17 18 0.00034 0.027 15.3 2.7 2 23 759 780 758 780 0.97 18 18 0.0063 0.49 11.3 2.9 1 23 788 810 788 810 0.98
Sequence Information
- Coding Sequence
- ATGTCTAACAATGAAAATGCAACTGGCATAAATCGCCAGATTCCTGTAGAAACGTATAAATGCACTCAGTGTAATTTCTACACCAATCATGAGTTTTATTTACAACAACACAACTTAAAACATAGCCTACAAATCTTGATGGAACAATATAGGAAAAACGAATGTAATTATGATAATGATAGCCAAGTCCCGTCTTATGTAAAATCTCACAGCTTGGTACCTGGAAAAGAATTCCAATGTGTTCAATGTAACTTTTGTACAACCCAAGAATTATACTATAAACAACATCTTTCATCTCATAATGACCAAACTATGACAGACACATATAGGGTAGTTCCGCAGCGGGGCTTTGATGAAGAAGATCCATATATAAAGTCAAGTTTAAACACTATGAGTTCTATTGAAATGTATGGTGCTCGAGATTTTGTTAGAGAGCAACAGTCAAGTTTGAAACCACATGATTTAACTCAAAGTACACAAACCTATGATGCTACTTTTCTAAGGCAGTCTGATCTAAGCACTGCCACTTTGGATCCATctaaatgtattgtatttagTTGTAATTTACCAGTATCAGAGGAGAACACTTTTAAGCAAAACAACTTATGCAGTGAATTACAGACTCCTTGTCCAGAAATGTTTAGATGTACTGAGTGTGATTATGAGAGTAGTCATGAAGAAGATTTAAAACATCATATTAAGCAACATCAGCAAGTTACAAAAGAAGGAATTAAAATTGAAGATGAACAATCAATAACAGAAATTTTTAGATGTCACAATTGTGACTATGAAACAAATTTGAAAGCATTTCTAAAGCGGCATATGTTAAACCACACTATcaaagtgaaaataaaaaatgaaccaACTGATAAGTATAAATGTTTACAATGTAACTTTGAAACTGATTATGAGAAGTTTCTAAAAAGGCATCAGCTTAGTCATAAGGAAAAACACTATTATTGTTGTAAAATGTGTAATTTTGAAACGCTttacaagaaaatgtatttgttgcATATAAAAGGTCATAAAATTAAGAGAAAAGTGTCTTCAGCAAAAACTAGGGAGTGTGTTAAGTGTGATGAATGCGATTTGGAAGTAGGATCAAAGGAACAATTACAAATTCATAAAAAACTGAGACATACAGAGAAGGAGGTTGATAATGATTTGCACAAATGTATGTTCTGTCAGTACCAGACTAATTGGGAGCCCTGTTTAAAACGCCATATTGAAAGAATGCATACAGATGAAAAAGAGAAGAAaggtgaaattaaaaaagaaaaggttaATGATAGAAAGGCAAGAATAAAAAAGGGTACAGAAAGGGATAAAACAGGTGTAGAAGAACATGAAGTATTTAGATGTAATAACTGTACATTTTTCTCAACCAGCAAACAGTATCTCATTCTGCATTTGAAAACTATTCATGGTAGGGGGCAGGCAGACACATTTCAATGCAAAATGAAGAATTGTAAATTTGCTACTGTCAATAAAAGTACTTTTCTGCAACATATGGCGGGTCATCGAGGAAAAATTCAGAGAACCAAGCGGCCCGTTGGTCATTTTTGTGATATGTGCGATTTCGTATCGAAAAATAAAGAACGTTTGGCGGATCATAAGAAGAAAgtccatttaaataatttgagacAGTTGTACAAGTGTTCACAGTGCGATTTCAAGACTGTCTATCAGACTAGTTTAAAGACCCACAttgaaaaacacaaaaaatacgAATGCACCATCTGTGAGCAAGAAGTCGAGTCAGCGTATGCTTTGGTGAAGCATCGAAGGACGCACCAAGTCAATTTAAAGAATAGAATTTTCCTGTGTGACGTGTGCGGCTTTCAAAGCAAGAACGACCGTTCGCTAAAAATGCACAAAAAAACTCACAACCCTGAGTTTAAGTGCCCTGATTGCCCATTTGAGACTCACAGCAAGGTGAACTTCCAAAATCACTGTATTAATCATAAGGGCGTCGATGAAGTGACCATGTACCCGTGCCCACACTGTTCCTACCAGTCCCGGTTAAAGCGTAACTTGGCATGGCACATGAAGCGTCACGTCGACCCATCAAAGGCAAAGATCTTCAAGTGTTCCCACTGCAACTACCAGACATTCACCAACGCTCAATTGAAATCCCATCTAATGGTTCATAAGAGCAAGGAGGAGGTGATCATGCTGAAATGCGATTTTTGCCAATTCGAGACGAAACGAAAATCAAATATGGTGCAGCACAGGTTACGCCATCTCAAGGATTCCCCCGATGTACCTCTATTGTCCTGTCCAGATTGTAATTACACCACTGTAGCTAAGCGTCACTTAAACAAACATAGAAAGACGCACAACGTCAATCCTGATAAGATGTTCCAGTGCACCTACTGTCCATTCAAGATCCAcagaaaaatttatttgatcAGGCACatggaaaatcataaaaataccgATGCATTCCCAAACGATCAGTGGCAAAGGTATTCTTTTCCATCACAAAGCAATATGGGAGTCACTATCGTGCCTAATGTAGGTCAAGGTTTACAACAAAATCTGGGACCTTCATTGATTTAA
- Protein Sequence
- MSNNENATGINRQIPVETYKCTQCNFYTNHEFYLQQHNLKHSLQILMEQYRKNECNYDNDSQVPSYVKSHSLVPGKEFQCVQCNFCTTQELYYKQHLSSHNDQTMTDTYRVVPQRGFDEEDPYIKSSLNTMSSIEMYGARDFVREQQSSLKPHDLTQSTQTYDATFLRQSDLSTATLDPSKCIVFSCNLPVSEENTFKQNNLCSELQTPCPEMFRCTECDYESSHEEDLKHHIKQHQQVTKEGIKIEDEQSITEIFRCHNCDYETNLKAFLKRHMLNHTIKVKIKNEPTDKYKCLQCNFETDYEKFLKRHQLSHKEKHYYCCKMCNFETLYKKMYLLHIKGHKIKRKVSSAKTRECVKCDECDLEVGSKEQLQIHKKLRHTEKEVDNDLHKCMFCQYQTNWEPCLKRHIERMHTDEKEKKGEIKKEKVNDRKARIKKGTERDKTGVEEHEVFRCNNCTFFSTSKQYLILHLKTIHGRGQADTFQCKMKNCKFATVNKSTFLQHMAGHRGKIQRTKRPVGHFCDMCDFVSKNKERLADHKKKVHLNNLRQLYKCSQCDFKTVYQTSLKTHIEKHKKYECTICEQEVESAYALVKHRRTHQVNLKNRIFLCDVCGFQSKNDRSLKMHKKTHNPEFKCPDCPFETHSKVNFQNHCINHKGVDEVTMYPCPHCSYQSRLKRNLAWHMKRHVDPSKAKIFKCSHCNYQTFTNAQLKSHLMVHKSKEEVIMLKCDFCQFETKRKSNMVQHRLRHLKDSPDVPLLSCPDCNYTTVAKRHLNKHRKTHNVNPDKMFQCTYCPFKIHRKIYLIRHMENHKNTDAFPNDQWQRYSFPSQSNMGVTIVPNVGQGLQQNLGPSLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -