Rfer019789.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- Sugp1
- Assembly
- GCA_014462685.1
- Location
- JAACXV010012110.1:13061-28091[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0059 0.46 11.4 0.2 1 23 1197 1219 1197 1219 0.96 2 9 0.0065 0.51 11.2 1.6 1 23 1225 1247 1225 1247 0.98 3 9 2e-05 0.0015 19.2 0.2 1 23 1253 1275 1253 1275 0.98 4 9 3.5e-05 0.0028 18.4 1.5 1 23 1290 1313 1290 1313 0.96 5 9 0.00017 0.013 16.2 2.0 1 23 1319 1341 1319 1341 0.98 6 9 5.5e-05 0.0043 17.8 4.5 1 23 1347 1369 1347 1369 0.98 7 9 7e-05 0.0055 17.4 1.3 1 23 1385 1407 1385 1407 0.95 8 9 0.0032 0.25 12.2 0.1 2 23 1413 1434 1412 1434 0.97 9 9 8.2e-05 0.0064 17.2 0.4 1 23 1440 1462 1440 1462 0.95
Sequence Information
- Coding Sequence
- ATGTCGAAACGTCCTTTTGATACAAATCAAAGTAAAATGACGCGCAATGACCGGTTTGCTCAAATGTCCTTTCAGGAGAAGCTTATAGAACAGAAAAAACGAGAGATTCAAGCAAAATTAGAAGCAAAGAGACGTCAAGGCAATCAAGAAACTAGGGAGAAAGAAGCAACGCCAACTGAAAAGATTAATAGTGAGAGCTCAACACCATCAAAAGATACCCAGGATCATAATAAAGCcggtattaatttattttctaatgatGGTTCTTTTCTGGACCAGTTTAAACAAATGAAAGATAAAAAATCAGAATCAAAATTTAAAGCTTTCAATAAGTTTAAAGACAGGGAACGAATGCGTGAAAAAGAGAAAGAAGTCAGCCGAGACAAAAAtaatgataAGAACAGATGGTTTAATAGCCGTCGACGTTCTCCATCGCCTCTAGATCGACAGAAAAAAAGCCGCTTTTCCTCAGAACGAACAAACTTTGAGTTACAAAAAATTACTATCAATACATctttttcaaatacaaatactTTTTCATCTAATTTTTCGCAAACAGGTCATATGAATCCAAATCAACAAAATTTTGATAGCCCTAGTCCATCTTTACTTGGTCCTCATCCCAGTACTCTCCAAACACCTGAAATTAGTATATCAGGTTCCTCCACCATGCCTACTAATACTTTTACGCATCAAACTTTGAATTTCACTCCACCTCCAACCATCAACACCTTGCTTCCAGGTAATCCAATTCAAACCACTACCAATACTCAGTTGGTAACTCAACAAATAGCCCCATCTCTTCAACCTGTTATACAACAAACTATTGGAATAGCTCAAAATCAACAAAACATGGTTCAAACCCCTGAACAACTAACAGCTAATTTGACGGGTGCAGTGTCTGCTTTACAATCACCTCAGTCAATAATAACCCAAACTTTAGCTCCACCTAATACCATTTTTTCTACTACAAATGGCACTGAGCAGATAATACAGACGCCACCACAGGTTTTAATGAACATACCACCACCTCAAATTATACCTCAAACTCAATTGGTTTTAACACCTCAAACCCAGAATGTTCTGGTATCTGCTCCAGCTAGTATTCTGACTACCGTAACTTTACCACCACCTGTAATTGCTCCACAGAGTATAAATGTCTCATCTCAGAATAGTATAGCTCGAGCTTCAGTAATACCATCTGTCGAATTGACCTCTATTCCACCACCTAATCCGATCCAGgtACAAAATATTCCTCAACCAGAACCCTTAAATACTCTGAACATTCCTCCACCAGCACCACTACAAGTCCAAAATATACCGACGCCCGCGTCACTACAACTCAATGAAATACCAAACCCCAAGCCACTTGATCTTATGGCTATACCCACTCCCAACGAGGGGAACGATAAAATGACCGTATCTGACCcggatttcataaaaaatatacctcCCCCAAATAAAAGTATACCTCCTCCAAATATAACGGAGGTTAGCACCGCAGTGCCTCCTCCGAACACGCTCATCCAGGCTGGTTTTCTTAATTCGAATCAAGCTCAAGGAATCTTAGTTCATAATCTTGCTCAGCCTGCGGGGCAAGTAACCTCTTTACAGGTAACAGggccatctaatttaccctcACTGTCTCAAGCAGGACAGTCCTCAACTGCTCATATCCCCTCTCTCATGTCTCAGCCTGTATTGCCCCCGCCAGGAATGACTGTAAATGTTCCTCCGCCGTCTTTATTGCCCCCACGTGACGTTAGTCAACCTCCACCAAACTTCGTCAACCAAGCTCCCCCACTGTTACCGAACATGAATATGCCACCACCGATGATTGGAAATGCAGCAGGGGTACCTCcagcttttaaagaacaaaTAACAGGTGGTGCTGAATTCGAAGCAATGGCGGCCTTGGCCCGTATGGTAGCCGACTGCGGTCCATCAGTGGAGGATGTTGTGCGGCAGAAAAAAAACAGAGATCCGAACCTTTGGTTTCTGTTCCATAGAGAATCGCCGGCTTACAGGCAGTATCTTGGTCTGGTAGAACAGTGTAAGAGAAAGAATGAAGAGAAGAGCGTCCAAGATGAAGCGGAGAAGCAGGAGTCGGAAATGTATGAACCGGAGATGGCATTGGAAGATGATGACGATCAGTTGGACGAAAAGAAAGTGGAGATCAAAGAGGAGAATAATAAGAATGATAATGACCGTGGTGATTGTAACAAAACAAGGAAAAGGAGAAGTCGATGGGGTGATAAAGATCCGAATATTAAACCACCCGGTGTCATCCCAATGGTAGTATCAAATATTAATCAGCTTCCTCCTGTTTCAGGGGCAGCATCTTTGCTGTGTAAAGTCACGCGTACCGATCCGGGCTTGCTCAGATATGTGGTTCAAGCATATGGCACGGCAAATCTGACGGACGAAGATTGGAAAAAAGCTCAAGACAACTACAAGGTTCACCTACTCTATCAGGACATGTTAAAGAAACGGGAAGAACTGGAAAGGCTCAGAGCACAGGGCAAGAACAAATATGAATACGATTCTGACGAAGACACCGATGGTGGTACTTGGGAGCATAAACTCAGAGAAAAAGAGATGCAGGCTACTGAAAAATGGGCCACAGAATTGACGCGTCAAGCTGAAGGAAAACATCACATAGGAGACTTTCTCCCCCCTGAAGAGCTGAAGAGATTTTTAGAGAAAAGCAATGCTTTGAAAGAAGGTCGGCAGCCCAACTTTTCTGACTATAAAGAATTCAAGATTAAGGAAGACAACATCGGTTTTAAGATGCTCCAAAGACTAGGTTGGACCGAGGGTCAGGGCCTGGGACAGCATAACGCCGGGATTATTGAACCTATTAACAAGGGAGCACCTCGTGAAAACACTCAAGGTCTCGGTCTCAATATTAGTGATGCCACTGAAGGTGAAGATGAGTATGAATCTTATAGGAAAAGAATGATGTTAGCCTACAGATTCAGACCGAATCCGATGGTAACACATTACGGAAAAATGGAACAACGAAAAGAAACTCTTCGTGATATGAAAATATGCCGCTTTTGTTTGTCCAGCAGTGAAAAGGATTTGACCAGCATCTATCAAAAGGACCTTAAAATGGCCCCGCTAACTGTACAGATTATGTCTTGTATATCAATCGAGGTATTTCCTAGTGACGGCCTTCCGCAGTTTATTTGTTCCTCAtgtaaacaacaaacaaatcagtcttacatttttaaaagcaattgtAAAAAAGCTGATGATGCCTTAAAGaattttcttCAAACTGGCGAGTTGATTAAGCCAGAGAGgtcaaaactaattaataaaggAACAACAACGGCACAAATTTTACCCGTTAAAGATGTTAAAATTGTGGAGGATTCAGAGCAAGAGTCATCCCATTCTAAGAGAATCAAATTACAAGATGGTACAGAAATAATAACTTTATGTATAACCCACTCCGAAAACAGTACACACGATGATTCCAGTCAAGATTCCATTCCTAATGATGATGATTTGGGAGACACTTTCCAAGAAGGTTTTCTCAATGAGTCTCAAGAGAGTGTCAAACAGGTTGAAACTGATATATTTCCATGTGATCAGTGTGACCGGACATTTCCATTGAAACAGTTGTTGGATTTGCATGTGCAAAACCATTCAAGAGAGCGGGCATTTTCTTGTTCAACTTGTGGAAGTGAATTTCTTAcTAAATACAATTTACAAATGCATGAGAAAACTCATTCTGAAGCGAAGCCATTCAGTTGTGGGATATGTGGACAGGAGTTTGGAAGGGAATCATTGTTAAGGAGACATGAGCAAACCCATACCGATCAAACTCATTTATTGAAACATGAGAAGAAGAGGCCTTTCATGTGTAGGGAATGTGACAAGAGTTTTGTCTTTAAACAGGGATTAGAACGACACATGACCTCTTTCCATGCCCTAGATAAGCCACACAAATGCAACTACTGTGAAGCAGCATTCAGTTCTCAAATTAGATTAACACGACATATCACAACTCATGCTGGTCTACGTCCATATCCTTGCAAGATTTGCGGTCGCACTTTCCTTCTGAGTCATCATTTGACTCGGCACATGCGTAGTCATTATGCTGCTGAACAAAATATGAAACCTGAAGAGGCTATAGGTCAACACAAGTGTGATATTTGTAGCATGTCTTTCAGGAGAAAGGATAGTTTGATCAATCATAGCGCTATACATAGCATGGTTAACTTGCGGTGTGTCATTTGTAACACCGCTTTCGAAACAGCCGATATGGTGAAGGAACATATAACAACCCATCTTCAAGGTCTACCTTTCCCATGCGAGAAGTGCGATTACAGTTTTGAAAATCAGTATCAATTGGAAGAACATGAAGTGAAACATGCTGAGATGGAATATGAGGAACAGATAGAGAAAGAAGTGATGTCTGAGGTTAAACAGGGCACGAGCGAAGGCATCGACCCAGATGATGATTTTCTGGAAGAAGGCGAGGTAACCCAATTTCACATAACAGACATAAATAATCCAGAACTGATATTAACTGGCTCAGAAATGAACAGAAATAGTGACCTAGAAGGAACATCAGAGCCTTCaaaggaattaaataaatatttcaaaccaTCAACAGATGTTCAAGGGAAACCGTCTAATACAGATGATGAGGAGGATCAGAGCATTAAACCTATTTTTAGAACTGAAGGAACCAAAATGTATGAAAGAAAAGGCCCTATTCAGCGAAAAATCCCTACTAAAGTTACTACTGATGGCATCAAAACCGCACCGTTggaacaaataaatgaaaagccCAGGATAGAGAGTTCCGGTATCACTCCGGATCTGAGCAATCTGCCATCGAAAAAGCCGGTCAACGTCAAAGTGGGAGATAAAGTCGTCAAAGTTCAAAAATTCATCATAACCAAAGAGGAGATGAAACAAATGGCTAAATTGGGTATTTTGGAAGTAAAAAATGGTCAGGTAACGATGAAGAATCCGGGCCAACCTATATTAAATGCTACTATTAAGCCAATACAACCAAGTGATATCgaaaattttattagtattcaGAAACAAAAAACACCTGTTAAGCAGTATGATAGAAAATCGAAACAGGCGGCCGCATCGACGTCCATCATTGATTCCGTCATTGAGGACTTTTCATAA
- Protein Sequence
- MSKRPFDTNQSKMTRNDRFAQMSFQEKLIEQKKREIQAKLEAKRRQGNQETREKEATPTEKINSESSTPSKDTQDHNKAGINLFSNDGSFLDQFKQMKDKKSESKFKAFNKFKDRERMREKEKEVSRDKNNDKNRWFNSRRRSPSPLDRQKKSRFSSERTNFELQKITINTSFSNTNTFSSNFSQTGHMNPNQQNFDSPSPSLLGPHPSTLQTPEISISGSSTMPTNTFTHQTLNFTPPPTINTLLPGNPIQTTTNTQLVTQQIAPSLQPVIQQTIGIAQNQQNMVQTPEQLTANLTGAVSALQSPQSIITQTLAPPNTIFSTTNGTEQIIQTPPQVLMNIPPPQIIPQTQLVLTPQTQNVLVSAPASILTTVTLPPPVIAPQSINVSSQNSIARASVIPSVELTSIPPPNPIQVQNIPQPEPLNTLNIPPPAPLQVQNIPTPASLQLNEIPNPKPLDLMAIPTPNEGNDKMTVSDPDFIKNIPPPNKSIPPPNITEVSTAVPPPNTLIQAGFLNSNQAQGILVHNLAQPAGQVTSLQVTGPSNLPSLSQAGQSSTAHIPSLMSQPVLPPPGMTVNVPPPSLLPPRDVSQPPPNFVNQAPPLLPNMNMPPPMIGNAAGVPPAFKEQITGGAEFEAMAALARMVADCGPSVEDVVRQKKNRDPNLWFLFHRESPAYRQYLGLVEQCKRKNEEKSVQDEAEKQESEMYEPEMALEDDDDQLDEKKVEIKEENNKNDNDRGDCNKTRKRRSRWGDKDPNIKPPGVIPMVVSNINQLPPVSGAASLLCKVTRTDPGLLRYVVQAYGTANLTDEDWKKAQDNYKVHLLYQDMLKKREELERLRAQGKNKYEYDSDEDTDGGTWEHKLREKEMQATEKWATELTRQAEGKHHIGDFLPPEELKRFLEKSNALKEGRQPNFSDYKEFKIKEDNIGFKMLQRLGWTEGQGLGQHNAGIIEPINKGAPRENTQGLGLNISDATEGEDEYESYRKRMMLAYRFRPNPMVTHYGKMEQRKETLRDMKICRFCLSSSEKDLTSIYQKDLKMAPLTVQIMSCISIEVFPSDGLPQFICSSCKQQTNQSYIFKSNCKKADDALKNFLQTGELIKPERSKLINKGTTTAQILPVKDVKIVEDSEQESSHSKRIKLQDGTEIITLCITHSENSTHDDSSQDSIPNDDDLGDTFQEGFLNESQESVKQVETDIFPCDQCDRTFPLKQLLDLHVQNHSRERAFSCSTCGSEFLTKYNLQMHEKTHSEAKPFSCGICGQEFGRESLLRRHEQTHTDQTHLLKHEKKRPFMCRECDKSFVFKQGLERHMTSFHALDKPHKCNYCEAAFSSQIRLTRHITTHAGLRPYPCKICGRTFLLSHHLTRHMRSHYAAEQNMKPEEAIGQHKCDICSMSFRRKDSLINHSAIHSMVNLRCVICNTAFETADMVKEHITTHLQGLPFPCEKCDYSFENQYQLEEHEVKHAEMEYEEQIEKEVMSEVKQGTSEGIDPDDDFLEEGEVTQFHITDINNPELILTGSEMNRNSDLEGTSEPSKELNKYFKPSTDVQGKPSNTDDEEDQSIKPIFRTEGTKMYERKGPIQRKIPTKVTTDGIKTAPLEQINEKPRIESSGITPDLSNLPSKKPVNVKVGDKVVKVQKFIITKEEMKQMAKLGILEVKNGQVTMKNPGQPILNATIKPIQPSDIENFISIQKQKTPVKQYDRKSKQAAASTSIIDSVIEDFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -