Basic Information

Insect: Rhynchophorus ferrugineus
Gene Symbol: -
Assembly: GCA_014462685.1
Location: JAACXV010000025.1:1892834-1895115[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.24 19 6.3 1.4 1 23 32 54 32 54 0.90

2 16 0.68 53 4.9 8.8 3 23 60 80 59 80 0.97

3 16 0.3 23 6.0 0.1 2 23 86 107 85 107 0.92

4 16 1.8e-06 0.00014 22.4 3.2 1 23 114 136 114 136 0.99

5 16 5.8e-07 4.5e-05 24.0 5.4 1 23 142 164 142 164 0.99

6 16 0.00097 0.076 13.8 5.0 1 23 170 193 170 193 0.95

7 16 0.012 0.9 10.5 1.4 2 23 200 222 199 222 0.94

8 16 0.0076 0.6 11.0 0.2 3 23 231 251 230 251 0.98

9 16 2.6 2e+02 3.1 1.6 2 19 368 385 367 387 0.94

10 16 0.0001 0.0082 16.9 1.5 1 23 402 424 402 424 0.98

11 16 0.00078 0.061 14.1 1.0 1 23 430 453 430 453 0.97

12 16 0.0054 0.43 11.5 1.0 1 23 472 494 472 494 0.94

13 16 0.0017 0.14 13.0 0.8 1 21 499 519 499 520 0.95

14 16 0.0031 0.25 12.2 0.4 1 23 538 561 538 561 0.96

15 16 0.68 53 4.9 3.0 3 23 568 589 566 589 0.96

16 16 0.058 4.5 8.3 3.5 1 23 595 617 595 617 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.24	19	6.3	1.4	1	23	32	54	32	54	0.90
2	16	0.68	53	4.9	8.8	3	23	60	80	59	80	0.97
3	16	0.3	23	6.0	0.1	2	23	86	107	85	107	0.92
4	16	1.8e-06	0.00014	22.4	3.2	1	23	114	136	114	136	0.99
5	16	5.8e-07	4.5e-05	24.0	5.4	1	23	142	164	142	164	0.99
6	16	0.00097	0.076	13.8	5.0	1	23	170	193	170	193	0.95
7	16	0.012	0.9	10.5	1.4	2	23	200	222	199	222	0.94
8	16	0.0076	0.6	11.0	0.2	3	23	231	251	230	251	0.98
9	16	2.6	2e+02	3.1	1.6	2	19	368	385	367	387	0.94
10	16	0.0001	0.0082	16.9	1.5	1	23	402	424	402	424	0.98
11	16	0.00078	0.061	14.1	1.0	1	23	430	453	430	453	0.97
12	16	0.0054	0.43	11.5	1.0	1	23	472	494	472	494	0.94
13	16	0.0017	0.14	13.0	0.8	1	21	499	519	499	520	0.95
14	16	0.0031	0.25	12.2	0.4	1	23	538	561	538	561	0.96
15	16	0.68	53	4.9	3.0	3	23	568	589	566	589	0.96
16	16	0.058	4.5	8.3	3.5	1	23	595	617	595	617	0.98

Sequence Information

Coding Sequence: ATGGATAGTATGGATGTTAAAACGGAACCTATTGAAGATACTTCTTCAGAATATACAGAGGATAATAAAATCTTAGATATAAAGAATGAGCAATTTCAGtGTGATTATTGTACAGAAATTTTTCATGCAGAAGAACTGTATGAACTTCATAAATATATGCATGATCCAGCAAAGCATTGCCCTCATTGTAATCGCACCtacaaaatagtaaaacattttcatgAGCATATGTTAAATCATTTAAAGAACTATATACAATGTGAATATTgtcctaaaattttatttggtagaaaattatatataagccATGTTTCTTGGCACCGTAAGGaagaaaaactttataaatGCAATTATTGCGGAAAGAGTTTTTCAACCAATAAGCAAAAAAATACACATGAGAGAGTTCATACTAATGAAAGACCATATAAGTGCTCAAAATGTACAAAGTGTTTTAAACAAAATGGTGCACTTAAGACTCACATGAATACTCATAAGGAAGAAAAAACACATTGTTGTGAAaGGTGTCAAGGAAATTTTGCTACAAGATCTAGCTTAAAAAGGCATATGAAAAGTGTTCATATGAGAGGACGATCAATGACCTGTAAATTATGTGGTGATGTATTCTTTAATAaagatagtttttttaatcatagAATGGAGAAACACCCAAATAGTAGCTTCTTCAGAGCTTGTCCAGTTTGTCCAGAGGAATTTACATCTAGAACTGTTTATTATATGCATAAAAGAAAACATGAAGAAAATGGTGAACTTGAATCGACAAagATTGATCATACTCTAAAAGCtatgaaaagttataaaaaatgtttactatGTGGAATCATAGTTGATATTCAGTTATATACTTTTCATGAAAATGAACATTTACATATAAATGAAGAGGAAAGAATTGAGTGTGAGCGAACATCGTTGTTTCCATGTAAACTTTGTGATAATGTTTTACTATCCAAAAGGACAGCTATTAATCATGCAGATTTGCACATTGAGAgaaattatgtttgtgataaaCAAGgctgtaaaataaaaacatcaatgACATATATGTCTTATTCTTCCCACGagtataattatcataaaaaaatggTTTGCAAGAATTGCAAAGTTGTTTTTATTGGTTTCATGAGTTTTAAGAAGCACTGTAAATATTTCTACTGCCTGACTAAGTTGCATAAAAAGTCATTAACATATATATGCAAGTGGTGCAAATCTACATTTGCGACTCCACATGATTTATCTGTGCATTATAGATCTCACCAAGTATCAACTGCCTACAAGTGTGAAAGCTGTAACAGGAAATTTCCGATCCTATCTAAGTTTCGGAAGCACTTGTTGGTGGCACATGGTGAGGAACTCAATAGCATGGATTTGTCACGGTTCAAGATTGGTGTGAGAAAATTTCTATGTAATCGATGTAACTTGACATTCGAGTCAAAAAATACCTTTGAAGCACATGAACAGTTACATGTACGCCCCAAGTTTCAATGTAAAAAATGCAATACTACCTTCGCTAAGGGAGCAAATTATCAATATCACATCAACAATAAATTATGTAGTCCATGGTTAGCAGAAGCTCTCCTAGTTGACATACAAGATTATAAATGCTTGTTATGCAATAAGATTTTGAGCTCCACCAGAAATTATGCCAGTCACATGGCGAATGTCCATTCCCAGAACAGTTTTGGATGTCGATATTGCGAGACGAAATGCAACACTCTTCCTAAACTCCGCTACCATTTAATAAAAAGACACagagaagaaaagaaatatttttgcagTCTCTGCCAGGATAGTTTTAGAACTTTTAAAGAGTACCTCTATCACCAAAGGTCTCACAAAAAGCATAAGGACATCAAGAATATTTTGCGCCAGGCCACTGcgaataatattatacacaaagaTACTAATGTTAAACAGGAAATCGAATATGGTGATGACTTCTTCGATGTACCAGAAAAAGTGGTTGTGAATGAAAACGGAGAACTGGAGGaatgctaa
Protein Sequence: MDSMDVKTEPIEDTSSEYTEDNKILDIKNEQFQCDYCTEIFHAEELYELHKYMHDPAKHCPHCNRTYKIVKHFHEHMLNHLKNYIQCEYCPKILFGRKLYISHVSWHRKEEKLYKCNYCGKSFSTNKQKNTHERVHTNERPYKCSKCTKCFKQNGALKTHMNTHKEEKTHCCERCQGNFATRSSLKRHMKSVHMRGRSMTCKLCGDVFFNKDSFFNHRMEKHPNSSFFRACPVCPEEFTSRTVYYMHKRKHEENGELESTKIDHTLKAMKSYKKCLLCGIIVDIQLYTFHENEHLHINEEERIECERTSLFPCKLCDNVLLSKRTAINHADLHIERNYVCDKQGCKIKTSMTYMSYSSHEYNYHKKMVCKNCKVVFIGFMSFKKHCKYFYCLTKLHKKSLTYICKWCKSTFATPHDLSVHYRSHQVSTAYKCESCNRKFPILSKFRKHLLVAHGEELNSMDLSRFKIGVRKFLCNRCNLTFESKNTFEAHEQLHVRPKFQCKKCNTTFAKGANYQYHINNKLCSPWLAEALLVDIQDYKCLLCNKILSSTRNYASHMANVHSQNSFGCRYCETKCNTLPKLRYHLIKRHREEKKYFCSLCQDSFRTFKEYLYHQRSHKKHKDIKNILRQATANNIIHKDTNVKQEIEYGDDFFDVPEKVVVNENGELEEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -