Rfer013323.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- -
- Assembly
- GCA_014462685.1
- Location
- JAACXV010013890.1:54237-61005[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.044 3.4 8.6 3.0 1 22 239 260 239 262 0.89 2 9 5e-05 0.0039 17.9 0.7 1 23 272 294 272 294 0.97 3 9 0.00028 0.022 15.5 0.3 3 23 302 322 301 322 0.97 4 9 0.00025 0.019 15.7 3.3 1 23 328 351 328 351 0.96 5 9 1.6e-06 0.00012 22.6 0.6 1 23 359 381 359 381 0.98 6 9 2.1e-05 0.0016 19.1 8.1 1 23 387 409 387 409 0.97 7 9 0.023 1.8 9.5 0.2 2 23 416 440 415 440 0.94 8 9 0.0012 0.097 13.5 6.4 1 23 454 476 454 476 0.97 9 9 3.7e-06 0.00029 21.5 1.6 1 23 482 505 482 505 0.96
Sequence Information
- Coding Sequence
- ATGAATCTACCAAGTTATGAAAAAACAAATGACTgcttttttaataagaatttgTTGACGGACAGTAGCACTGACGACAAAACTAAAGCATGTGAAATGCCCGGTTCTTCGGACTTTTCGTTAGAGGCATTTTCGTCAACCAGAAAAAGAGTTAATGAAGAATCACTAAACACAAATGAAACCAACaaatatcaaaaGTTTGAGGAGATAGAGAAGAGTTGCTGCATATGTTTGAAACgtggaataaaatataacaaagtctCGAGGAAAACAGACACCAAAGTTGCTCtgttaactaaattaaaaacttgTATTCCAGAAATTATTTGgtccacatttttttatatatgtgagGAATGCACCAGCActctaaatatttgttatgagTTTCGCGAGACTTGTTTAAAATCGGATTTTATCAGGAAGGAAGAATtgaaaaccaataaaaacaatatattattaaaggcaGAATGGGCTAcaaatattgaagaagaaacaaGTCAGGATGATACAGTTGGTGATGATGTTAATGACGGTCTTAAGGAGGAATCGAATGATTTTGACCCTGATGAGCCAATGCTTAATAACTCCGATAATAGTGTTTCCGAGGACTTCATTGATGATAGCAACGCTGCGAGCAAAACAGAAACGTTCAAGAACGACACGAACGAAGAGACTCCCAACAATTCTCCCAAGAAGAGGAAAAGGGTGACGTTCCGCTGCGAGAAATGTTCCGTTTACTTCTCTAGCAGCGTCAGTTTGCTGAATCACTGCACCACGGAGCACGACATGGACCCCAAGGAGATCAAGCCATTCGCCTGCGACAGGTGTCCCATGAAGTTTTACAGCTCGTCGAATCTGTGGCAGCACGTCAAGTATCACAACGGCGTCAAGTCCAACATCTGCTCGTATTGCGGGAACGGTTTCATTACCAAGACGGACCTCGTCAATCACGAGAAGAAGCACCAGAACAAGCGCGAGTACAAGTGCGAACTGTGTCAGAAAACGTTCAACACTCACAAGAATATCAGgTCACATAAACTGATCGTCCACACCGACCCGTCGCTGTGGAAATACGCCTGCAGTATCTGCGGCAAACGGTTTCCGATCAAATCGAACTACGACAGTCACATGAGGAGACATACCGGCGAGAAGAACTTCGACTGTCACCTGTGCGACAAGAAGTTCACGACGAAATGCGACCTGCAGCGACATAAGAGGAGCCATTCGTACGTTAGGGACCAAAAATGTCCGATCCAGAATTGCAACAAGGAATATAAAGACGAACGGGTCCTGAAGATACATGTCGCGAAGGTCCATGGTATAGGCACGGTCAAAGTACCCGTAAAAGAGAAAAGACACGTGTGTcacttttgttccaaggcctaCTATGACAAGAACAAATTGACTCGTCACCTCTACACGCACTCGGGCGAAAAGCCCTTCAACTGTCCGGTCTGCGATAAGAAATTTAATGACAAATCCTACATCAAACAGCATCTGCGGAATACGCACAACGTAGATACCAACAATACTCTAGAAACCGAATTAAACATCAATTATATGAATAGGACTACTTAA
- Protein Sequence
- MNLPSYEKTNDCFFNKNLLTDSSTDDKTKACEMPGSSDFSLEAFSSTRKRVNEESLNTNETNKYQKFEEIEKSCCICLKRGIKYNKVSRKTDTKVALLTKLKTCIPEIIWSTFFYICEECTSTLNICYEFRETCLKSDFIRKEELKTNKNNILLKAEWATNIEEETSQDDTVGDDVNDGLKEESNDFDPDEPMLNNSDNSVSEDFIDDSNAASKTETFKNDTNEETPNNSPKKRKRVTFRCEKCSVYFSSSVSLLNHCTTEHDMDPKEIKPFACDRCPMKFYSSSNLWQHVKYHNGVKSNICSYCGNGFITKTDLVNHEKKHQNKREYKCELCQKTFNTHKNIRSHKLIVHTDPSLWKYACSICGKRFPIKSNYDSHMRRHTGEKNFDCHLCDKKFTTKCDLQRHKRSHSYVRDQKCPIQNCNKEYKDERVLKIHVAKVHGIGTVKVPVKEKRHVCHFCSKAYYDKNKLTRHLYTHSGEKPFNCPVCDKKFNDKSYIKQHLRNTHNVDTNNTLETELNINYMNRTT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -