Rfer009316.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- -
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000309.1:558593-560215[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00015 0.012 16.4 1.0 2 23 238 259 237 259 0.96 2 9 0.0028 0.22 12.4 0.6 2 23 263 283 262 283 0.96 3 9 0.032 2.5 9.0 3.3 3 22 290 309 288 311 0.88 4 9 4.6e-06 0.00036 21.1 3.5 2 23 318 340 317 340 0.96 5 9 7.1e-06 0.00056 20.5 2.1 1 23 346 369 346 369 0.98 6 9 1.4e-05 0.0011 19.7 2.4 1 23 375 397 375 397 0.96 7 9 4.6e-05 0.0036 18.0 2.6 1 23 403 426 403 426 0.97 8 9 0.011 0.86 10.5 0.1 3 23 436 456 435 456 0.96 9 9 0.00021 0.016 15.9 0.2 2 23 460 482 459 482 0.97
Sequence Information
- Coding Sequence
- ATGactgattttaaaaatacggataaaaatgtagaaatatgCCGGTTATGTTTGGGATTGACTGTTACAAAAATGAGTATATTCACTGATGACTTTGCGAAAATGTTAGAAATTCTCACTTCGTTGAAAGTAAAACCTGACGATAATTTACCCAAGATATCCTGTTTGAAATGTGCTAAAGATGTGAAATCAGCTTTTCTTGTAAGGAGAAGAATAATTCAGTCATACAGGtcatttaacaataaattaaatagactAGAACTTCTTTTTGATAACAGTTCTCCTTCTGATAAACAGTTAAAGAATTTTAATGCAGATGGAGGGACGAACAACACTCATTACACAGCCAAGCAATCAAATGAAAAGAATGAAACTGAAAATGAATACTGTGATATGGATAGTCCTGAGGAGTTAGTTAACGATACCCCACTAGAAAACATTGCTCCTACACTAAACGTTATTATAAAAACTGAAGTAGAAAAAGACCCAAATATTCTTCTAGAGAAACCAGATGGTACTGAAGTTAAGGCAAATGATCTtactaaactaaaattattacaaacaaaacagaaaatgaATGCCTGGAAATCAATGAACATGAAACACCAGATTCAGGTTTTAAGGTGGATGGAAAAGAAGAAAGCCAACACCAAGAACATCACTTCACAGTTGGCTACTGTCCCCCCAAAGAAAAGGGAACCCCTGAAAATGTATTGTGGTATTTGCCAGATTaagtttacaaataaaattgccTTCAAAAACCACATGACCAGACACAAACACAAGACATGCCCTGTGTGTGATAAGCAGATTCGTAGCACTTATCTGAAGAAACATATGGCACTACATGAACAGACACCCGTGATATGTGAGGTCTGCGGTCAAACTTGTAAGAATGCATGCAGTTTGAGGatgcactttttctattatcaCAAGAATCCTAGTTTTTGTGTTTGTGAAGATTGTGGCAGGTCTTTTAGAACCAAAACGAAACTGTTGTATCACCAAAGGAAAGATCATACAAAGGAGAGAAACTATAAGTGTGAGACCTGTGGTAAATCATTCTTTTTAAAGATATACTTAACGAAACACATTAATATGAAACACATGAAGCTGCGCCCccatatttgtgaatattgcgGGAAAGGATTCTCCGGTAGACACGCGCTAAGAACTCACGTCCGCCAGCATACAAATGAAGCGCCATATCACTGTAATCTTTGTGGGGAGAGGTTCAAGCAAAGAGTATCACTACGCGGCCATCTTAAGAGCAGACACAGCGTTGAAGAAGAAAACACGGTATTTTGCGACACTTGTGGGAAAGGTTTTGCGTCAGATGTAGCTCTGGATGTACACTCTCGTTTACACTCGGAAATCAAGTGCCCTTGGTGTACAGACACATTTGCTGATAAAAATTATCTAGAACAGCATATTAATACCATGCATCAGAATATACCAAATAATGTAGTGGAGGATGGTGGTCTAAAATGGATAAATCtgtga
- Protein Sequence
- MTDFKNTDKNVEICRLCLGLTVTKMSIFTDDFAKMLEILTSLKVKPDDNLPKISCLKCAKDVKSAFLVRRRIIQSYRSFNNKLNRLELLFDNSSPSDKQLKNFNADGGTNNTHYTAKQSNEKNETENEYCDMDSPEELVNDTPLENIAPTLNVIIKTEVEKDPNILLEKPDGTEVKANDLTKLKLLQTKQKMNAWKSMNMKHQIQVLRWMEKKKANTKNITSQLATVPPKKREPLKMYCGICQIKFTNKIAFKNHMTRHKHKTCPVCDKQIRSTYLKKHMALHEQTPVICEVCGQTCKNACSLRMHFFYYHKNPSFCVCEDCGRSFRTKTKLLYHQRKDHTKERNYKCETCGKSFFLKIYLTKHINMKHMKLRPHICEYCGKGFSGRHALRTHVRQHTNEAPYHCNLCGERFKQRVSLRGHLKSRHSVEEENTVFCDTCGKGFASDVALDVHSRLHSEIKCPWCTDTFADKNYLEQHINTMHQNIPNNVVEDGGLKWINL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -