Rfer001516.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- -
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000001.1:2103736-2119613[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.4 2.7e+02 2.7 4.6 2 23 357 381 356 382 0.86 2 13 1.1 83 4.3 0.3 1 23 457 481 457 481 0.93 3 13 0.62 49 5.0 0.3 5 23 489 508 486 508 0.92 4 13 0.16 13 6.8 1.9 3 23 514 536 512 536 0.87 5 13 0.002 0.16 12.8 1.4 2 23 539 561 538 561 0.97 6 13 3e-06 0.00023 21.7 0.7 1 23 571 594 571 594 0.97 7 13 4.7e-05 0.0037 18.0 1.3 1 23 599 622 599 622 0.94 8 13 0.00017 0.013 16.2 0.9 1 21 665 685 665 689 0.92 9 13 3.2e-05 0.0025 18.5 0.7 1 23 692 714 692 714 0.98 10 13 0.00062 0.049 14.4 0.6 1 23 740 762 740 762 0.98 11 13 0.0003 0.024 15.4 4.2 1 23 768 790 768 790 0.99 12 13 2.3e-05 0.0018 18.9 1.1 2 23 797 818 796 818 0.97 13 13 2.4e-05 0.0019 18.9 0.6 2 23 825 846 824 846 0.98
Sequence Information
- Coding Sequence
- atgcatcatcgttttccgttaaaaaagtatccggcgatctttaagaaatgggtagaaaacattaaaaatcctaaccTGATTGggttaaatatgaaacaaatttatgatcgttaccgcGTGTGtcatagacatttttgtgataaattTAAACTTTCTGTTCCTTCGCGAACTGGTCTTAGGGTAGATGCTTATCCGACATTGTTTTTAcctgaaAGTAAATgcagtacttatgaacaatttagtgatggtgagaATAAAACCGCGAGCCCAGAATATATACAAATGgaggatcaaaatcaaaatgatagagaagtgcctatttccatcatTCCAGGCGCACAACCAGGCTGTTCAAAGCAAGTGTCATCaatatttgaacaaactccagaagATAGCCAACCGAGTTCTtatgaacaaatatttgataatggTGAAAATATTATCCAGAGTATAAAGCCAGAGTGTGTTGAAATAGAGataattgaaaattgtattgaagAACCACAACCAAATATTGTAATTGCACCAAACACATCTGAGGAAGTTCCATCAAAAGCTGCAATGGAAATTGGGCTTATTGAAACAAAAGCAAattatttggaTTTGAACTCTGTGTGTAGGTGTTGCCTGCAGAATGAAAATTTAAGAATAATGAAAGGAACAATGATAGGAAACATAAATGCAATTAAATGCTATGAGGATATAACTAAAAGAAAGgtAGACTTAAGAATCCCAGCAAAAATTTGCACTAACTGCATAAAACAGTTAACTGAAACACAAAAGTTTCTTAAATTACTTGATTGGTCTGATAATTTATTACACAAATCTATGAAAATAGAAACTGACAAGTTTGAATTATCACAGGAAGCTCAAATGGTACTTAaagatgaaaatattaacattttcagtGACTTGAGTTTATGtaatgGGGATGTTATACATTCATCTGATGATGAAAATCCTGTATTAGAGAAAAGTATTAAcacaaagaataatttaaagaaatggcTAAGTTTCAATGAAAATACTTATGTAAGCCGAATAATTGATACAACTGTACAAAGTTCAGAATGTCATTCACAAATTTGTCCTATTTGTCAGGAGGAatcaagccaTTTAGAAaggcatttaaataatattcatcacATAGACTGGTTAAACTCAAAATGTCTAAAATGCTGCTTTATGACccatgataaattaaaattatttgagcaTTCAAGTGAATGCCGTGGTGATGgaaatgttattgaagggtttGTTAAATATGAACTTTCAAATGAATGCAGTGGCGATGGAAATATTAATGAAGGACTGTCCAAAAAGAAATCTAAAAGTAGAATTATTAaggtaatcaaacaaacaaaatttaactGTAATCAGTGTAACAACTTAAGTTTTATCACATATGAAGATATAGAAGCGCATTATAAGgaCTGGCATAAATCGAGCctaaattgtatattatgtgAACAGGAATTTAGTAACACTTACAGTGTGCTATATCATATGATGGTTAAGCATGGAAGATTGAAATGTTGTAGATTATGTTTGGTTAGTTTTAAAACAAAGGAAGAACTCATGGGGCACTATAAATCAGAAGAACACAATACAAAATGTGTAGTTTGTGATGAACAgTTTAAAAATAGGAAAGCTTTGTATGGCCACCGCAGGCGGAAACATTTAAATCCACTATTAGAGTATAAGAAGTATAAGTGCCCTGAATGCTCAAAAGAATTTGTGAACAAGCAGAATATCAAAAGACATATTTTAGTTTTCCATAATAATGTTCGATTTTTGTGTGATACTTGTGGACAAAGTTATACAACAAATAGAAATCTTCAGTTACATATAACAAAGTTTCATAAAGGCCAAAAAGTGGAAATTACAAAGCCCAGAAAAAGTTTCTTTTGTGAGTCGTGCGGGCGTGAATTGAAAATATTCCACAAATATGCTATAGCCCTTCATATGGCAAGACACAAAGGTCATTATTTCGTTTGTAAAAAGTGTCACGAATCTTTTGGCTCCAAAGAGGAGCTTAACATGCATATAGAGGAACAAAACCATCAGCTTTTTGAGTGTACAAAATGCCCGTCTCAGTTTGTACGCGAGGAGAACCTCAAAATTCATATGAAAAATCATGATGCACCTGGATGGAACAAGAACTATTTTATACAGTATGGTAAATCTGCAGAATTAAGAAATGAAAAAGgaGAGTTTGAATGCAGCTACTGTCCAAAGgcgtataaaataaaacaaagattaGACAACCATTTGAGGGTTCACACGAATGAAAGGCCATATAAATGCCAGTTCTGCCAAAAAGCTTTCAAGACATGGATCCATCGAAAAACTCATTTAAATGTTCACCTGGGAATAAAAAAGTGGCAATGTCGATTCTGCCAGAAAGCCTTTACATACTCCAGTACTTTGAAGGCCCACGAAATGACGCACACTGGTGAACGCCCTAACAAATGTCCCGAGTGCTACAAAGGATTCATATCCACATCGGCCTTGAAAAAACATCGACAGGTTCATTTCAGAAATAGCATTAATTGTCAAGGTATTAAAAATTCTAAGATTAAGGTAGAAATGCAAGAAGAGCAAAGTGCAAGATtcataaataagatatttatcaGCGATGATGTAAATTACAGCAACCTGACTGAGCCAGAAGATCAAACTTAA
- Protein Sequence
- MHHRFPLKKYPAIFKKWVENIKNPNLIGLNMKQIYDRYRVCHRHFCDKFKLSVPSRTGLRVDAYPTLFLPESKCSTYEQFSDGENKTASPEYIQMEDQNQNDREVPISIIPGAQPGCSKQVSSIFEQTPEDSQPSSYEQIFDNGENIIQSIKPECVEIEIIENCIEEPQPNIVIAPNTSEEVPSKAAMEIGLIETKANYLDLNSVCRCCLQNENLRIMKGTMIGNINAIKCYEDITKRKVDLRIPAKICTNCIKQLTETQKFLKLLDWSDNLLHKSMKIETDKFELSQEAQMVLKDENINIFSDLSLCNGDVIHSSDDENPVLEKSINTKNNLKKWLSFNENTYVSRIIDTTVQSSECHSQICPICQEESSHLERHLNNIHHIDWLNSKCLKCCFMTHDKLKLFEHSSECRGDGNVIEGFVKYELSNECSGDGNINEGLSKKKSKSRIIKVIKQTKFNCNQCNNLSFITYEDIEAHYKDWHKSSLNCILCEQEFSNTYSVLYHMMVKHGRLKCCRLCLVSFKTKEELMGHYKSEEHNTKCVVCDEQFKNRKALYGHRRRKHLNPLLEYKKYKCPECSKEFVNKQNIKRHILVFHNNVRFLCDTCGQSYTTNRNLQLHITKFHKGQKVEITKPRKSFFCESCGRELKIFHKYAIALHMARHKGHYFVCKKCHESFGSKEELNMHIEEQNHQLFECTKCPSQFVREENLKIHMKNHDAPGWNKNYFIQYGKSAELRNEKGEFECSYCPKAYKIKQRLDNHLRVHTNERPYKCQFCQKAFKTWIHRKTHLNVHLGIKKWQCRFCQKAFTYSSTLKAHEMTHTGERPNKCPECYKGFISTSALKKHRQVHFRNSINCQGIKNSKIKVEMQEEQSARFINKIFISDDVNYSNLTEPEDQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -