Rfer018830.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- ZEB2
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000086.1:901447-904888[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00071 0.055 14.3 4.6 2 23 209 230 209 230 0.96 2 9 0.0016 0.12 13.2 1.3 1 23 241 263 241 263 0.98 3 9 0.23 18 6.3 1.7 1 11 269 279 269 291 0.79 4 9 1.6e-05 0.0012 19.5 0.1 2 23 314 335 313 335 0.97 5 9 1.8e-05 0.0014 19.3 0.6 1 23 357 379 357 379 0.95 6 9 4.4e-05 0.0035 18.0 6.8 1 23 385 407 385 407 0.96 7 9 1e-05 0.00081 20.0 3.2 1 23 415 437 415 437 0.99 8 9 2.3e-05 0.0018 18.9 4.8 1 23 443 465 443 465 0.98 9 9 2.9e-05 0.0023 18.6 1.8 1 23 471 495 471 495 0.92
Sequence Information
- Coding Sequence
- atggattcagattttaaaataaagaccaAGGATTTTCCTAATATATGTCGGGCCTGTTTAGTTAATACAGATCTTAAACCACTTGTAGAAAtagaacttattaaaatatttaccaatattaGCGATATACAGattcaaAAAGGTGACCAATTACctactaatttttgtttaacttgTTCTAATTACTTacaagaaatatcaaaatttgcTGAAATATGTAAGGCAAATAATACAATACTAAAATTAGTTATTGAATCGgaagagaaagaaaataaagtaaatgatttAGATATTAGTGTAGATACCTATGCTTGCCAAGATAATGATAATAGTTTTGATGATGTAAAGCCTGAAAGTCCTGATGATAATGACTATGATGAAGATGATGATAATGAAGATAATGAAAATGATGCTTATTGTTTGCCATTGAAACAAGAAAGAAATCATTCTAAAGATGGAGATAATTATGATAATGAAAAACCATTTAGAAGAAGGGGTCCAAGAagacgaaaaaatatttttgttcaacaaAAGCAATTAAAGAGTTATGTTAAAAGAAGGGGAAGAAAACCTAAAATTGAaagtgatgatgatgatgatgataaatcTAATAGTGCTATACCTGTGTGTAAATCATGTGGTACTACATTTAcaagtaaaactaaattatgCTCTCATTACAAGGAACATGAGGCTTGTAGACCTAagaattttaagttattcaaaTGTGAACAGTGTGAAaaagaattttccACAATTCGAAGACGAAATGAACATATGAACATTCACACAGGAGAAACACCATATATTTGCTCATACTGTGGTAAAGGATTCCAGTTATACCCTGCTCATTTTAAACATGTATATAGACATCGATTAGCTTTAGGTGAAGTAGAACTAAAACCAGGTTATACAGAAAAAAGAGTGAAacttaatttaaaatgtgaTTTATGTCCTAAAGTATTTGCAAGTAGGTCTGGTTTTGCTAATCATCAACTTATACATCAAGGAGTAAAAATACAGTATAAGAAGCGAATTAAAAAAGATGAGGgtcctaaattaaaaaatttcttgTGTAATTATTGTGCAAAAAGTTTCAGAACTAAAGTTCAATTAGATGATCACATTAGAGGACACACcggtGAAAGGCCATTTAATTGTACCTATTGTCATAAGTGTTTTAAGACAAAAGCTGCACTAAAAACACATGAAATGAATCATTTAGGGACAACACCACAACGATTTAAGTGTGAAACTTGTAATAAACCATTTTCTCTCAAAGCCCATTATGAAGTCCACAGAAGAACCCACACTGGTGAAAAACCATTTGAATGCCACTTTTGtggtaaatgttttaattataggGGCACATGGAGAattcATCTTAGGATACATACTGGGGAAACCCCTTATGCGTGCCCTATATGTGGAAATAGATATCATGATAAGAGTAGCTTAAAtaaacatcaaaagaaaaaagggcATTTAGGCGAAGCAATTAAAAATGAATCCTTATGA
- Protein Sequence
- MDSDFKIKTKDFPNICRACLVNTDLKPLVEIELIKIFTNISDIQIQKGDQLPTNFCLTCSNYLQEISKFAEICKANNTILKLVIESEEKENKVNDLDISVDTYACQDNDNSFDDVKPESPDDNDYDEDDDNEDNENDAYCLPLKQERNHSKDGDNYDNEKPFRRRGPRRRKNIFVQQKQLKSYVKRRGRKPKIESDDDDDDKSNSAIPVCKSCGTTFTSKTKLCSHYKEHEACRPKNFKLFKCEQCEKEFSTIRRRNEHMNIHTGETPYICSYCGKGFQLYPAHFKHVYRHRLALGEVELKPGYTEKRVKLNLKCDLCPKVFASRSGFANHQLIHQGVKIQYKKRIKKDEGPKLKNFLCNYCAKSFRTKVQLDDHIRGHTGERPFNCTYCHKCFKTKAALKTHEMNHLGTTPQRFKCETCNKPFSLKAHYEVHRRTHTGEKPFECHFCGKCFNYRGTWRIHLRIHTGETPYACPICGNRYHDKSSLNKHQKKKGHLGEAIKNESL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -