Rfer013325.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- -
- Assembly
- GCA_014462685.1
- Location
- JAACXV010013890.1:46682-52974[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.04 3.1 8.8 1.5 1 19 157 175 157 178 0.97 2 9 6.2e-05 0.0049 17.6 2.8 1 23 190 212 190 212 0.98 3 9 2e-05 0.0016 19.1 1.3 3 23 220 240 219 240 0.96 4 9 6.8e-05 0.0053 17.5 3.2 1 23 246 269 246 269 0.96 5 9 2.7e-06 0.00021 21.9 1.9 1 23 277 299 277 299 0.99 6 9 7.2e-06 0.00057 20.5 7.2 1 23 305 327 305 327 0.99 7 9 0.00047 0.037 14.8 2.1 1 23 333 356 333 356 0.97 8 9 5.1e-05 0.004 17.8 2.0 1 23 372 394 372 394 0.98 9 9 1.1e-05 0.0009 19.9 6.0 1 23 400 423 400 423 0.98
Sequence Information
- Coding Sequence
- ATGGTATTGACGATGTCCAAGAAAACTCTTAACAGGAAATGCTGCGTGTGCCTGAACAACAATTTGAACCTGAACAAATTATCGAAGAAGGACGAGAATGACATCAACCTGGTAACCAAGCTCAGGACCTGCATTTCGGAAATTGAGTGGGCTGTGAACTATCAGATATGCGATCCCTGCACCAATTTGTTGAATATCGTGTACACATTCCGAGAAACATGCATCAAATCTGATCTGATACGAAAAAGTGACGATGCAAACTTGAAGGACGATGAAATCTTACAGATCTGTAAAGACGAGTTACCGCTGGACTTTGCCGAGCTAAAACAAGAAGAGGCATACAATGAACTATCTGAAGAAGGAGATAATGATGATGGTCAGAGCGATGGGGATTTATCTAACGAAGAAGACAAACCTGAAATAGCTGAATATGATTCGAAGAAGAAAAAGAGGAGAAAAACTGTTCATTTCACTTGTGAAAAGTGCAGCAGTACTTTCACTTCCAGTATTAAGTTAGTTAACCATTGTGTTTTGGAGCATGAAATGACCGTGAAGGATGTACGACCTTTTGTGTGTGATAGATGCCCCAGTCGATTCTGCAACTCATCTAATTTACTTCAACATATCAAATACCACGCGGCGGTGCGGTCCAACATCTGCACCTACTGCGGCAAGGGCTTCATCACAAAGACTGACCTGAACATTCACGAGAAGCACCATCTCAACAAGCGCGAGTACGAATGTGACGAGTGTGGTAAATGTTTCAACACCCATAAAGACATCAGGTCTCACAAACTCGTCGTGCACACCGACTCGGATCGGTGGAAATACCAGTGCGAGATATGCCACAAGCCGTTCCCTATCAAGTCGAATTACGACAGTCACATGAGAAGACACACGGGCGATCGCAAGTTCGAGTGTCACTTGTGCCAGAAAAAGTTCACCGATAAGTGTGTTCTGCAAAGACATATGCGTACTCATTCCAACGTTAGGGAATATAAGTGCAAGTTGTGCGACAAAGAGTATAAAGACCATCGAGTCATGAAGGTTCACATGGCTAAAGTACACGGTGTCGGACTGGGTGAAATCAAGTTACCATCGAAGGAACGGAAGTACGTGTGTCATATCTGTCCCAAGGCCTACTACGCGAAAAACAAACTGACCAGACACCTGTACACCCACTCTGGCGAGAAACCGTATCAATGTCACATGTGTCAGAAGAAGTTCAACGACAAGTCCTACGTGAAACAGCACCTGAGGAAAACCCACAATATCGATAAGGATATCAGCGAGAACGAGTTCAAGATGCATTACAGTGACGGGGGCGCAGCAGGGAATTGCGAACCGGACGCCATGTTATTGTGA
- Protein Sequence
- MVLTMSKKTLNRKCCVCLNNNLNLNKLSKKDENDINLVTKLRTCISEIEWAVNYQICDPCTNLLNIVYTFRETCIKSDLIRKSDDANLKDDEILQICKDELPLDFAELKQEEAYNELSEEGDNDDGQSDGDLSNEEDKPEIAEYDSKKKKRRKTVHFTCEKCSSTFTSSIKLVNHCVLEHEMTVKDVRPFVCDRCPSRFCNSSNLLQHIKYHAAVRSNICTYCGKGFITKTDLNIHEKHHLNKREYECDECGKCFNTHKDIRSHKLVVHTDSDRWKYQCEICHKPFPIKSNYDSHMRRHTGDRKFECHLCQKKFTDKCVLQRHMRTHSNVREYKCKLCDKEYKDHRVMKVHMAKVHGVGLGEIKLPSKERKYVCHICPKAYYAKNKLTRHLYTHSGEKPYQCHMCQKKFNDKSYVKQHLRKTHNIDKDISENEFKMHYSDGGAAGNCEPDAMLL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00376589;
- 90% Identity
- -
- 80% Identity
- -