Rfer020354.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- -
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000050.1:106894-115460[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.064 5 8.1 1.5 1 19 328 346 328 347 0.97 2 18 0.46 36 5.4 4.1 1 23 378 401 378 401 0.93 3 18 4.5 3.5e+02 2.3 2.1 1 22 434 455 434 457 0.89 4 18 0.0013 0.11 13.4 2.3 2 23 555 576 555 576 0.97 5 18 0.022 1.7 9.5 0.1 1 23 605 627 605 627 0.88 6 18 0.0046 0.36 11.7 0.4 2 23 631 653 630 653 0.91 7 18 8.4e-05 0.0066 17.2 0.8 2 23 680 702 679 702 0.94 8 18 0.00028 0.022 15.5 2.2 1 23 741 764 741 764 0.96 9 18 0.002 0.15 12.9 2.0 2 23 778 799 777 799 0.97 10 18 0.00052 0.041 14.7 5.7 1 21 836 856 836 858 0.95 11 18 0.02 1.6 9.7 0.3 1 21 870 890 870 893 0.87 12 18 2e-05 0.0016 19.1 0.8 3 23 932 953 930 953 0.95 13 18 0.017 1.3 10.0 0.0 2 23 975 996 974 996 0.89 14 18 0.48 37 5.4 0.1 1 23 1041 1064 1041 1064 0.94 15 18 0.02 1.6 9.7 2.8 2 23 1075 1096 1075 1096 0.97 16 18 0.00065 0.051 14.4 1.3 3 23 1117 1137 1116 1138 0.94 17 18 9.5e-06 0.00074 20.2 0.8 1 23 1146 1168 1146 1168 0.98 18 18 0.0012 0.09 13.6 0.6 1 23 1187 1210 1187 1210 0.94
Sequence Information
- Coding Sequence
- ATGGCGGAACATCGAACCGGCGAATACCTCAACGTTTGCAGACTGTGCTTGTGCGACAGGCCCGAATCGCTGAAGTCGATTTTCGACGTTGAACTGGGACCGAACAGGCTGCAGCAAAAGATCCATCAATTGGTGGCCATCCAGgtGAGTCGCCAAGACCAATTCTCCACGCTCGTCTGCAACGATTGCATCATCAGATTGGACACGTTTCACTCTTACAAGCGGGAATGTCATCGGAACCAAACAAAATTGATCGAGTTGATGAACAAAACTGGCGTTTTAAGCCCGGATGAACCGATACTTCGGATAAAACCGGATCCAGATTCGGAGGAAATAAGCGAGGCGGGGCTGATGAACGGGACTCATCCCGTGTGGCCCATCAAAGTGGAGATCGACGAGCCCATGGACGACGAATACAACGAACTGCCTCCCGAAATCGTCGCCAAGTACGGGAGCGACGATGGCCAGACATACGACTGCCCGGAGAGACAACCAGAAGCTCCAAGCTTGCGGGCGCACCAGTCATCCACCCACAAGAAGGACAAACGCACGCCGATGTGCGAGATCCGGAAAACCGGGGACGAGTTGGAGGGAATCGAGCGGCATGGCGTTGGCAAAGACGCGAACGAGAacgacgacaggacggtccggACAATGATGAATCACGTTGGCGTTGATCCGGCGAACAACGAGGATACTATGAGCAATCAAGCTTCCGATCAGAGGACGCAGGGCGCATCAGAAAATCCCGAAACCGATCATCAGAAGATACAGTTCGCCGCCGGTTTGAAACTGGTCCAGAAAGATACCACTCCGATAGAGTGCGAGGCGTTGTCCAAGATTGAGCTCAGTTACATCGAGAAGTGCAAGGCTATGGTGTCTATGTTCCAAACGTTGCAGTGCGCCTGTCACAACGCACATCACAAGTCCAAACACAATCTGATGTCGCACTTGCGCGAGCAAAGGATATGGTTCCCTTTGTTCACGTGTTACGACTGCATGACGTCATTCACGGACAGATCCTCGTATTTGAAGCACAACCCCAAATGTCCCAAGACCCAGCTGGAGACTCTGATGAAACTTTCCAACCTGAAGAAGCGGAACGAGATCAAGACCAGAGTATACCAGAATTTCAAGTGCAACCGCTGTCAGTTCCTGTTCAGTTTTTACGACGACTACTGCAGACATGTCGAAGAGGAGCACGCACACGGCGAACCCCCGATCTATTGTTCCTGTGGGCTGGTGTTCGATGCCCTGAAAGAgtataaacaccactgtttccgCTCCTGTCTTCTCTCGTATTACTGCGACATCTGTTTCGTGGCCACCGCCACGCTAGAGGAATTTGTGAAACACTGCCAGGAGCATCACGATCGATCGGAGGGCTTCGTCCTCCTGCAGGAAGCCGTGTACAGTCCAAGGAAGATGCCTGCGCCGAAAGAATGCGACGAGGAAGGCGCGTCGGAGGCCAAACAGGAACGGAGGAGATCGCTGCGACCACTGGCATCCGTCGATATGTACGACGGTACCAAAGACGAAAGCGTCGCTAAGAAGAAAGCGGACTTAGGGGCGCTGCTGAAGAACCTGCCAGCGAAGATCATAGTGTCGAAGATCCTCGGGATGGGCGACGTGATCACGGCGGCGGACTGGCGGAAAGCCGCCAGCTGTCCGACCTGCGACAGGGACTATTCCAGCATGCACAACATGGTGAGGCACTACAAGACCCACCTGGAGAGGAACGAGGTGGACGTTCCGCCCGAGGTGCTCAGCCAAATCAAATCTCACCAACCCGAGGAAGACGAGAGCGCCGTGTATTCGTGTCCGGACTGCGGCGGCATGTTTAACTCGGCAGAATGGACGCAGCACTTGGACGAGAACCATCCGTCTCTGAACTGCGACGAGTGCGACGACGTGTTCAGGTTCCAGTCAGAGCTGAAGCAGCACAAGATCGAACAACACAACCAGAACGGTTTCAAGGACATCGCGAGCGTTCTTACGCCAGCGGTGGAGATCGACGACGTGGGCGAGGTAATGGTCACGTGCGACCTCTGCGACACCATGTTCAAGACCAAAGACGACCTGCGGAGTCACAAGATGCTGTACCATCAACCCTCGAATCGGTCCGACAGTTCGGTAAATGGCGATGGATTTGATGAAGACGACGATATGCCCGTCCTGGATAACGAAGAGGACGAGGGCAAGCCCGGTTTCGTGGAGAAATTCATGTGCGAACATTGCGATCGCGTCTACGCCAGCCTGAAGACCCTCAAGGAACACTTGAAAAACAAACACGGCACTAGTTACGCCCAGAAGGGCACCGAGTTCCCCAAGAAGTGCGACTACTGCGACAAAATGTGCATGACCCCCGCGTCTCTATATCTGCACACGCAAATGCACGAACGGATGACCCTGAGCGACCTGCGCGACGACAAATCCGCCATCGGGAAGGCGCGCAAGAGATCGGAGCTAGAGAACGCGGCCGATCCGGAGGAGGAGGAGTCCTACTACAACTGCAAGTACTGCTTCAAGGTGTTCAGTAACAGGGGCAAACTGAAGGACCACATGAAGTGTCACACGCCAACGAACCTGGTGAAGCGAGCGCGTAAGTTCCTCTGCGACCTGTGTCACACGGCGTTCGACAGCAGACCGGATCTGGAGGCGCACAAGGTGGAGGACCACGCCGAGGAGATGGACGAGATGCCGCAGCTGGTTAGTCAGATGGAGGTGGAGGTCGAGATCAAACAGGAGGTGGAGGATGAGAAGTTCGAGGTACCAAAGATGAAGAACATGTTCTGCAAATACTGCCGGAGGGCATTCAGCTCGCTGGTTGAGTTGACGCGACACATGCGCGACGAGCACGGGGACAGCCCCAAGATCAGGATGCCCCGCGACAAGCGCAAGGACAACGTGGAGAAGAACATCAAGTGCCCGCTGTGCAAGAAGGCGTTCGCGAGCGTCGGTGCGATGACCGCCCACGCGGGTTGGCATAAGCGCGCCGGCAGTCGGCTGGAGAATCCTGAAGCGCACTCTCCCCAGGCCATAGCGGCGCTCAAACTAGCCCGACAATCCAGGGTGTTCAACAAGAAATCCGCACCTCCCAAACCCCAACCCGCGTCCCGATTCCAGTGCTCCACCTGTTTCGCCCGGCTACCGAACGACACCGCCCTCCAGATCCACATCCTCGAACAGCACAGAAATCTCGAGGAGGTGATGCTGGTACCTCGCTGCAACACCTGCAACAAAGATTTCAAATCGCAGCTCGAGTACGATACCCACAAACGCTACCACGAGTTAGTCGAGCGCCAGAAGAGGATGTCGGGCGGCCAACCGCTGCCGAAGAAGAATCCCTGCAACTACTGCTCGTCAAGTTTCACTAGAACCGACACGTTGGCCGCCCACGTGCGGCAGCACCACCCCGAACACGTCCGCACGGAGTTCCGCTGCGACCAGTGCGACCGCGTTTTCGAGAAACAGAACTCGCTCACCATTCACCTGAAGGTGCACGAAAAACAAAGAAACGGCGGCGGTCCGGCCCCCCCGCCACCCGGCGGCAAGGTCTACCTGTGTCCCATCTGCAACATGACCTTCAACTTCACCAAGGACCTCCGTATGCACACCATCAAGGCGCACCCCTTCTGA
- Protein Sequence
- MAEHRTGEYLNVCRLCLCDRPESLKSIFDVELGPNRLQQKIHQLVAIQVSRQDQFSTLVCNDCIIRLDTFHSYKRECHRNQTKLIELMNKTGVLSPDEPILRIKPDPDSEEISEAGLMNGTHPVWPIKVEIDEPMDDEYNELPPEIVAKYGSDDGQTYDCPERQPEAPSLRAHQSSTHKKDKRTPMCEIRKTGDELEGIERHGVGKDANENDDRTVRTMMNHVGVDPANNEDTMSNQASDQRTQGASENPETDHQKIQFAAGLKLVQKDTTPIECEALSKIELSYIEKCKAMVSMFQTLQCACHNAHHKSKHNLMSHLREQRIWFPLFTCYDCMTSFTDRSSYLKHNPKCPKTQLETLMKLSNLKKRNEIKTRVYQNFKCNRCQFLFSFYDDYCRHVEEEHAHGEPPIYCSCGLVFDALKEYKHHCFRSCLLSYYCDICFVATATLEEFVKHCQEHHDRSEGFVLLQEAVYSPRKMPAPKECDEEGASEAKQERRRSLRPLASVDMYDGTKDESVAKKKADLGALLKNLPAKIIVSKILGMGDVITAADWRKAASCPTCDRDYSSMHNMVRHYKTHLERNEVDVPPEVLSQIKSHQPEEDESAVYSCPDCGGMFNSAEWTQHLDENHPSLNCDECDDVFRFQSELKQHKIEQHNQNGFKDIASVLTPAVEIDDVGEVMVTCDLCDTMFKTKDDLRSHKMLYHQPSNRSDSSVNGDGFDEDDDMPVLDNEEDEGKPGFVEKFMCEHCDRVYASLKTLKEHLKNKHGTSYAQKGTEFPKKCDYCDKMCMTPASLYLHTQMHERMTLSDLRDDKSAIGKARKRSELENAADPEEEESYYNCKYCFKVFSNRGKLKDHMKCHTPTNLVKRARKFLCDLCHTAFDSRPDLEAHKVEDHAEEMDEMPQLVSQMEVEVEIKQEVEDEKFEVPKMKNMFCKYCRRAFSSLVELTRHMRDEHGDSPKIRMPRDKRKDNVEKNIKCPLCKKAFASVGAMTAHAGWHKRAGSRLENPEAHSPQAIAALKLARQSRVFNKKSAPPKPQPASRFQCSTCFARLPNDTALQIHILEQHRNLEEVMLVPRCNTCNKDFKSQLEYDTHKRYHELVERQKRMSGGQPLPKKNPCNYCSSSFTRTDTLAAHVRQHHPEHVRTEFRCDQCDRVFEKQNSLTIHLKVHEKQRNGGGPAPPPPGGKVYLCPICNMTFNFTKDLRMHTIKAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -