Rfer021995.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- -
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000039.1:848797-857042[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.099 7.8 7.5 0.2 6 23 51 69 51 69 0.98 2 17 0.0021 0.17 12.8 0.2 2 23 89 111 88 111 0.96 3 17 2.8 2.2e+02 2.9 1.8 2 23 117 137 116 137 0.91 4 17 0.36 28 5.8 0.3 2 23 150 168 149 168 0.89 5 17 1.3e-05 0.001 19.7 2.3 1 23 174 196 174 196 0.96 6 17 3.1e-08 2.4e-06 28.0 0.7 1 23 202 224 202 224 0.99 7 17 0.00057 0.045 14.6 1.4 1 23 230 252 230 252 0.97 8 17 0.89 70 4.5 1.5 2 19 265 282 264 284 0.93 9 17 3e-05 0.0023 18.6 0.5 2 23 300 322 299 322 0.95 10 17 7.9e-06 0.00062 20.4 2.0 1 23 334 357 334 357 0.98 11 17 2.1e-05 0.0017 19.1 1.3 2 23 366 388 365 388 0.96 12 17 0.00031 0.024 15.4 1.2 1 23 395 418 395 418 0.98 13 17 1.8 1.4e+02 3.6 0.6 3 21 424 442 423 445 0.88 14 17 0.29 23 6.0 0.4 1 23 452 477 452 477 0.88 15 17 0.62 49 5.0 0.3 5 23 483 501 482 501 0.93 16 17 0.00046 0.036 14.8 1.0 1 23 507 529 507 529 0.99 17 17 0.0029 0.23 12.3 0.5 1 20 535 554 535 556 0.94
Sequence Information
- Coding Sequence
- ATGGGTGATTTAGAGGAACATGAATTGGATTGTGCTTGCGGGGATTCGAACTTATACACCTGCAAATGTTGTCAACATATTTTCGACGAAACAGCTTGGACAGATCATGTGAACAGAATAAAGCTTCAAAGAACAGTTGACTATGTTTGTTGCAACATTAGTTTTGATGATGATTTTAATTACAAAGATCATATAAAGACTTTTCATATGGAAAACGTTCTTGTCAGTAATTTAGAACCCGTGGTTAAAACATCACCTACAGTTTCCTGTAGATATTGCGATCAAGTGTTTGCCAATCAAAATTTAACTATTGCTCACGAGAGAAAAGTCCACGGCGACCAAGTCATCCAGTGCGACATATGCTCAAAACACCTCAAACTAGAACGTTTTAGAGCCCATAAAATCACCCACCGCACAAAGAAGCATTATTATAACACCCCGGCGAAGGTGTGCAATGTTTGCGGGCTCTCTGTGAAGAATCTTGAACGTCATTTGGTCACTCACGAAAATTTAAGGAAACATTCTTGCACTAAATGCGAGAAAAGTTTCAAATTGTCTTGGGACCTGAAACGACACATGGTGGTACATAGCGATGAAGCTAAGTACAAGTGTGACGTCTGTGACAAGACCTTTAAAGTAGCATTCAATCTAAGGGTCCATATGAGAATCCATGAAGGCGTCAAACCTTTCGCTTGTTTGGTGTGTGATAAAAGTTACACGACGAAGCAATCTCGAGACAACCATTTGAAAACCCATGATCGgatTTCTATCTTTAACACTTCTGATTTATTGCGTTGTAAGTGTTGTACGCATATATTCGAAACACAAGAGCTATTGATCAAACACTCGATTGGTTGCTTCGACCCTAAGGACAGGAACAAGCGTTCCAAGGAGGTCCAATGCACCGAGTGTGGACAAGTTTTCGCCGAAAAGGGCCACTTGAGAATGCATCGAAATTACGTTCATTCTGGCTCTAAGTATGCGTTCAAGCAAGGAGATTTTCAGTGTAATGATTGCAATAAATCCTTTTCGAAGTTGCCATATCTCGACAAACATCGCAAGAGAGTCCATCAGGAGGCGGTGGATGAGGATTTGCCATGTCCAGAGTGCTCGAAAACTTTCAAAAAGCAAGACACCAGAAGAAAACATATTAAAGTTTTTCATGGTGGCTACGTACCATGCTACAAGTGTGATGTGTGCGGAGAAAAATGTAAAGGCAGAAATGGCCTAGAGAATCATAAACAGACGGTTCATCTGAACAAACCGATTTGTTCGTTATGTTGCCAAGAGTTTAATAACGAGGCGGATTTGAATTCCCACAAAGTGGCGGTACATAACGTTGATGTTAGCGTCTATGATTGTCCTGAGACAGGGTGTTTAAAAATCTTTACCAGTGAAGAGTTGTTGAAGTGTCATCTAGAGGCAACGCATATGAAAGAACGTAAGTTTTGCTCAGAAACTTTCACTGATCCTGTCAAATACGACGAGCACATCCATCAGCATCGACAAAATAAACTGTATAAGTGTGATATATGTGATAAAGAGCTCTCCGGCAATCACCGACTCCTGGAACATCGTCGTATCCATACCGGCGAAAAACCCTACTCTTGTAAGAGCTGTGATCAGAAATTTGCTACCAAACAACAACTGGATGTTCATAAAACGATATCTAGCAGCCCATATGAGAACTACTTTTTGTGGATCCAATTTGTAGTCATTCATTCTTTCATCAAACGATGA
- Protein Sequence
- MGDLEEHELDCACGDSNLYTCKCCQHIFDETAWTDHVNRIKLQRTVDYVCCNISFDDDFNYKDHIKTFHMENVLVSNLEPVVKTSPTVSCRYCDQVFANQNLTIAHERKVHGDQVIQCDICSKHLKLERFRAHKITHRTKKHYYNTPAKVCNVCGLSVKNLERHLVTHENLRKHSCTKCEKSFKLSWDLKRHMVVHSDEAKYKCDVCDKTFKVAFNLRVHMRIHEGVKPFACLVCDKSYTTKQSRDNHLKTHDRISIFNTSDLLRCKCCTHIFETQELLIKHSIGCFDPKDRNKRSKEVQCTECGQVFAEKGHLRMHRNYVHSGSKYAFKQGDFQCNDCNKSFSKLPYLDKHRKRVHQEAVDEDLPCPECSKTFKKQDTRRKHIKVFHGGYVPCYKCDVCGEKCKGRNGLENHKQTVHLNKPICSLCCQEFNNEADLNSHKVAVHNVDVSVYDCPETGCLKIFTSEELLKCHLEATHMKERKFCSETFTDPVKYDEHIHQHRQNKLYKCDICDKELSGNHRLLEHRRIHTGEKPYSCKSCDQKFATKQQLDVHKTISSSPYENYFLWIQFVVIHSFIKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -