Basic Information

Insect: Rhynchophorus ferrugineus
Gene Symbol: -
Assembly: GCA_014462685.1
Location: JAACXV010013802.1:52845-59008[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 1.9 1.5e+02 3.5 0.4 1 19 229 247 229 249 0.86

2 10 0.0031 0.24 12.2 1.4 1 23 262 284 262 284 0.98

3 10 2.7e-06 0.00021 21.9 1.3 2 23 340 362 339 362 0.95

4 10 1.1 87 4.2 0.1 1 19 425 443 425 446 0.79

5 10 1.7e-05 0.0014 19.3 2.2 2 23 474 495 473 495 0.96

6 10 6.5e-06 0.00051 20.7 1.0 1 23 501 523 501 523 0.98

7 10 1.8e-06 0.00014 22.4 1.2 1 23 529 552 529 552 0.96

8 10 5.9e-08 4.6e-06 27.1 1.1 1 23 558 580 558 580 0.99

9 10 2.1e-07 1.7e-05 25.4 2.1 1 23 586 608 586 608 0.99

10 10 3.7e-05 0.0029 18.3 2.8 1 23 614 636 614 636 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	1.9	1.5e+02	3.5	0.4	1	19	229	247	229	249	0.86
2	10	0.0031	0.24	12.2	1.4	1	23	262	284	262	284	0.98
3	10	2.7e-06	0.00021	21.9	1.3	2	23	340	362	339	362	0.95
4	10	1.1	87	4.2	0.1	1	19	425	443	425	446	0.79
5	10	1.7e-05	0.0014	19.3	2.2	2	23	474	495	473	495	0.96
6	10	6.5e-06	0.00051	20.7	1.0	1	23	501	523	501	523	0.98
7	10	1.8e-06	0.00014	22.4	1.2	1	23	529	552	529	552	0.96
8	10	5.9e-08	4.6e-06	27.1	1.1	1	23	558	580	558	580	0.99
9	10	2.1e-07	1.7e-05	25.4	2.1	1	23	586	608	586	608	0.99
10	10	3.7e-05	0.0029	18.3	2.8	1	23	614	636	614	636	0.96

Sequence Information

Coding Sequence: ATGGAAAGTGCAGAGTCACGAGAACTATTAGAAAATGTAGTTATAACTGAAGAAGGACCTGATGGACCCCAATATATTAGACTTCCTGAAAACTCCCAAATAATTAGTTcagaattattacaaaatccTAATGGACTTGTTGTAGATTTAGGTACAAATGACTTTATTCCGGTTACTTACAGATTTTCTAGCTCTGACATTCTACCTCAAGAACTTACTGAAGAAGATAGAAATTTAGCTGCTGCTTTAGTTGCTGTGCAGCTAAATCAACAACAGAAACAGCAACAACTACAAGATGCTGCATTACCACCTTTACtaaCAAATAACAGAATACTAGAAGAGCACCAACAATTAATTCTCACACAGGATAAAACTGGAAATGGACAGTACCTCAAAATTGTCAATACAGATAACATATACATCGATCAGCAGGGAGTTCACAAAATCGTAGAAAATGTAAGAATCATAGATGAATCTGATCATATACAACATGTATCTACTATTGAAGCCCCTGTTCATCCAGaaagtaaaattgaaataatagagAAAGTACCGGAAGAAGAGAAGGGAGACTCTGATCATGAGTCATTAAGgAATGATAATCGTTCATCAAAAAAATCTCTACCTCATAAAAAACGTATAAGTAGGAAACTAAGGAAAAATAGTGCTGTAAATACAAAGAAGTATGTCTGCAGTTTCTGCAATGAAAATTTTTTGCATATTGATGAGTTTCAAGAACACGAAGGTAGTTGCCAAGAAGCCAAGATACCAGTGCCATTACCTTTTTCATGTCAATTGTGCAATACTCCATTTGCGGATCAGTTAAAGTTCTTTGAACATTTAAAGAAGCATTATGAGCCAGGAGGCCTTGGAGGAATGGCCCAAGTTGCTGTTCCTCCACAAATTATCACAGAagataagaaaaagaaaatctCCCCACCACCAAAACCAGAAAAAAAGGCACCTGCAGAAGACAAAGAGCCTCAAGAGACTCTATTATCCAGTTTGCTTAGTTTGCAATGTATGGAGTGTAACAAGACTTTCAGGAGACAGAAAACCTTTGAGGCTCACATGAGGGATGTGCATTGTAACAAGCCTGAACCAGAAGATGAGTTCTCTGAGCCCGAAGACATGATGGCAGGAATTAACGTGATGGTAGACAATGAAAGCACCATGGGCGACAATGGAGAAGATGACAGTAAAGCCTGGTACCAGGAGGAGGAACTGCACCAAACTGAAAAGGACCTGGAGGAATTGGAGAACAAAGACGACCATGTATGCCACCTGTGCAAACAACCGTTTGCCCTGAGAGCCATTCTTTTGCAGCATCTGGTTACCTGTAGGGTGGCATCTGGAAATCCAGAACCAACTCCGGCGATGATTGTCAGgagaaaaaacaagaaaatcaaagaaaaactgAACTGTGAGCTATGTGATAGGGTCTTCAAACATCGAAATTCTTTAGTCTACCATATGAGAAGTCATAGTGGTATAAGGCCGCATCAATGCGAATTATGTGGTAAAAGCTTCTTTGCATCCAGCGCTCTAAAAGttcaTCTACGACTCCATTCTGGCGACAAACCATACGATTGCGAGCACTGCGGGAGAAAATTCAGACAGTGGGGTGACCTGAAGTATCACATAACATCGATTCATTCGACCGAGAAGAATTATCAGTGCGAATACTGCGGCAAGAAGTTTGCCAGAAAATACTCATTAGTCGTTCATAGAAGGATACATACAGGCGAGCGAAATTACAAATGCGAATATTGTGGGAAGACGTTCAGAGCATCGTCGTACCTCCAGAATCATCGAAAGATCCATACCGGAGAGAAGCCGCACAATTGTCCCATTTGCTCGAAATCTTTCAGGGTACGTTCCGATATGAGGAGACACGAGAAGAACCACGGCAAAATGCCCATACCACGCGGAGGGGCCACTAAGGTACCGACCCAGACGCAAACGTTCAAAGTCCACAAAGACGAGGTCGAAGAGAACGACGAGTCCAACGAGTTGCACATCGGCGAAGAGGAAGAGGCCGCCGAACACATTTTGGGCGGTTACGAACATCAGGAGATCGAGATGATGAGCGCCAGTGGTTCGATCACCAAGAGAAACATTTATACGAATGGGCACGAACTCTTTTTGGTGACGTACCCGAACGAGATGGTACCGCGAGGCTCCGGAAACACCGAAACCTGGATCCATACAACCAACGCTTAA
Protein Sequence: MESAESRELLENVVITEEGPDGPQYIRLPENSQIISSELLQNPNGLVVDLGTNDFIPVTYRFSSSDILPQELTEEDRNLAAALVAVQLNQQQKQQQLQDAALPPLLTNNRILEEHQQLILTQDKTGNGQYLKIVNTDNIYIDQQGVHKIVENVRIIDESDHIQHVSTIEAPVHPESKIEIIEKVPEEEKGDSDHESLRNDNRSSKKSLPHKKRISRKLRKNSAVNTKKYVCSFCNENFLHIDEFQEHEGSCQEAKIPVPLPFSCQLCNTPFADQLKFFEHLKKHYEPGGLGGMAQVAVPPQIITEDKKKKISPPPKPEKKAPAEDKEPQETLLSSLLSLQCMECNKTFRRQKTFEAHMRDVHCNKPEPEDEFSEPEDMMAGINVMVDNESTMGDNGEDDSKAWYQEEELHQTEKDLEELENKDDHVCHLCKQPFALRAILLQHLVTCRVASGNPEPTPAMIVRRKNKKIKEKLNCELCDRVFKHRNSLVYHMRSHSGIRPHQCELCGKSFFASSALKVHLRLHSGDKPYDCEHCGRKFRQWGDLKYHITSIHSTEKNYQCEYCGKKFARKYSLVVHRRIHTGERNYKCEYCGKTFRASSYLQNHRKIHTGEKPHNCPICSKSFRVRSDMRRHEKNHGKMPIPRGGATKVPTQTQTFKVHKDEVEENDESNELHIGEEEEAAEHILGGYEHQEIEMMSASGSITKRNIYTNGHELFLVTYPNEMVPRGSGNTETWIHTTNA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01244462;
90% Identity: -
80% Identity: -