Rfer021980.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- ZFX_1
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000039.1:1018371-1024218[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 4.4e-07 3.4e-05 24.4 0.6 1 23 199 221 199 221 0.97 2 18 6.1 4.7e+02 1.9 2.2 1 23 225 247 225 247 0.79 3 18 5.7 4.5e+02 2.0 1.9 3 19 284 300 282 304 0.88 4 18 0.019 1.5 9.8 4.9 1 23 310 333 310 333 0.95 5 18 4.2e-05 0.0033 18.1 2.1 1 23 343 365 343 365 0.98 6 18 0.0012 0.095 13.5 0.6 3 23 372 392 371 392 0.97 7 18 0.00015 0.012 16.4 1.6 1 23 398 420 398 420 0.97 8 18 1.7e-07 1.3e-05 25.7 0.4 1 23 426 448 426 448 0.98 9 18 0.0049 0.39 11.6 0.1 1 22 454 475 454 475 0.96 10 18 0.059 4.6 8.2 1.9 2 17 555 567 554 573 0.77 11 18 0.01 0.82 10.6 1.4 1 23 576 598 576 598 0.96 12 18 3 2.4e+02 2.8 0.2 1 15 605 619 605 627 0.74 13 18 0.16 12 6.9 0.3 1 23 631 655 631 655 0.90 14 18 0.00066 0.052 14.4 0.8 2 23 662 683 662 683 0.97 15 18 0.12 9.3 7.3 4.0 1 23 689 712 689 712 0.90 16 18 1.2e-05 0.00091 19.9 0.9 1 20 723 742 723 743 0.96 17 18 7.6e-06 0.0006 20.5 1.9 2 23 755 776 754 776 0.97 18 18 2.5e-06 0.0002 22.0 1.1 1 23 782 804 782 804 0.97
Sequence Information
- Coding Sequence
- ATGGATGTGGCCAAgTCGTGCCCGATGGCATTTTTCACTCCAATTGTGGAGATAGCGGAACCTATCGGCGGGATTCAAACCGAAACCAAAGACCCAACTCCAAACAACGAACCGAGAAGCGAAAGCGACCAGATGGAAATTAAACACGAACCACCTGAAACCAAAAATGACAACACCGACATAATTCCTTCAGGGGAGGCGCCTTCCCCTGACGCTGCCGACATGAAAAGCGAAGACGAGGATGAGAAGAATTCGGAACCAAAGCATCAAACCAAAGACAATGTAACGATTAATAACAAGAGGAAACGCGGGCGGCCGAAGAAGAATGAGGTCAGTCCTGTAAAGAGTACCGAAAGTAACAATAAATCGCCCAAGAGGAAACAACGAGTaccaaagaaaaattataaggaGACTGACGACGTCAGTTACGAAGAGGAAACTCTTATTTGCATGGATCATCTGGACGATGATAAAGTGATAAAATGTCCCATATGCAAGGACGACAAAGAGTGGACGTTAacggaaattagacagcattacAAAACGGAACATCCCAAGAAACGATTGAGAACTTCAAGGTTTTTTGGTGATACACATCCGTGCGATGTATGTGGCAAAGAATTTAAATCTAATGGCAGTTTAAAGGATCACATGGAGACTCACAACAACTATTTCTATTGTGACATTTGTAATCATTCCACCAAGAAGATTTTGGATCATATCGTACACCTGAAGATTCACACCGGTCACCCAGGATACTTCAAGTGTTTGATGTGCGAATTTAATAcgatggaaataaataaaataaacgaccATGTGACCCATCACGAGGACTTGCTCAAATACTGGTGTGATTCGTGTAAAAAATCGTTCCAAATTCTTCAGCATTTCCAAGAGCACGACAACTACCATACTGGACTGAAACCTTTCGACTGTCAATACTGCGGTAAATGTTTCTTGTATTCTCGTTATTTACACGCTCATAAGATGATCATGCACAAGGAGGAGGTGAACTGTCCTAATACATACGAGTGTGTCATTTGTAATAAAGTGTATCAACACAGAAACAGTCTTAAACTGCATATGAATTCGCATACAGGGAATTTTGCGATTTGTGACGTGTGCGGCAAAACGCTTTCAAGTAAAGAGAAGCTAAAGTTCCACCTGCGAATCCACACCGGATACAAACCGTACAGTTGCCAGTACTGTGGTAAATGTTTCACCAAAAAACCGATACTAGTCGAACACGTGAGGGTTCATACTGGCGAAAAACCCTATGTTTGCGATTATTGTACCAAAGCGTTCTCCCAAAGAAGCAGCCTTGTGATCCACATGAGAGGCCACACAGGCGAGAAACCGTACCCATGCCAATTCTGCTTTAAAGCTTTCGTCGCCAAAGCCATGTTGAACATCCACCTCAAAACTTGCAAGGGTTTTTTTCACATAGCCAAAACTGAACTGACTGATATTTTAACGGGTATTTTACCGGACggagaagaaattttcatacattttgttGACGAGGAAGAGCCGAATAACATCGATATTGCGAATGACGAGTTAATAGAGGAGGAGGAGGAAATTTTGAAGTTAATGTATGATGACGAGGACACGAATGCTTGCGAACAAGAGACGACTACCTCAAAGCCAGATCGAAAATTACAGTGTAACATTTGCGGTAGATCGTTTAAGTATCTCATGCGTCATCTTCAATGTCACGGACCACATAACTGTACGGAGTGCCTTATCAATTTTGAAACCAAGGAGGAATACGATGACCATATGCGTCAGCATGTTCCCAACGCCGAACCGTTCCGCTGTGAGGAGTGTAACGTCAGCTACCTTACTCCAACCGATATCGCTTTACACAACTTCGAACATACCCAAAAATATTCGTGCCCGTTGTGCGATTTCACCGCGAAAGGTCGCAGTAAGGTGACTTTGATTAATCACATCAAAAGACACGAAGGCAAATTCGGTGCCACCTGCGAGATATGCGGACAAGGGTTCATTACGgaacattttttgaagtcgCATCGTGAGATTCACGAGGCAATACCCAAATATGAATGtgaattttgcaataaaaagtTTACAGTCCATCGTTATATGTACGTTCACAAAACGTTGAATCACAAGAAGGAAATGTTTGGGATAGAAGAAGCATTCCAATGTGAAGTATGCGGAAAGAGGTTTACCTTTGAGAAGAGCTTAAAACGACACTTGAGTTGCATTCATAAGATCGGAGAGGATCGTACTGTAGAGTGTCCCATTTGCCATAAAATTATCGCCAACAATCACAACCTCAAAAAGCATATGCGTCTTCACACCGGAGAGAAACAGTTCTGTTGTGATATATGCGGGCGAGCTTTCGCCGACAAAAAGTACCTCACTGCGCATAGGAACGTCCATGAAAAGGAAAAACTGAGGAAGGTCCAAGCTGCTGGTAACCAAACGTTTCTTGAAAACGACgaaattgaatatttacaattaagaaACTCTCAGGATTCCCCACCTGTCGATCAAACGGACGATCGGAtcttttttgatgaaatttatttgaattttacgtGA
- Protein Sequence
- MDVAKSCPMAFFTPIVEIAEPIGGIQTETKDPTPNNEPRSESDQMEIKHEPPETKNDNTDIIPSGEAPSPDAADMKSEDEDEKNSEPKHQTKDNVTINNKRKRGRPKKNEVSPVKSTESNNKSPKRKQRVPKKNYKETDDVSYEEETLICMDHLDDDKVIKCPICKDDKEWTLTEIRQHYKTEHPKKRLRTSRFFGDTHPCDVCGKEFKSNGSLKDHMETHNNYFYCDICNHSTKKILDHIVHLKIHTGHPGYFKCLMCEFNTMEINKINDHVTHHEDLLKYWCDSCKKSFQILQHFQEHDNYHTGLKPFDCQYCGKCFLYSRYLHAHKMIMHKEEVNCPNTYECVICNKVYQHRNSLKLHMNSHTGNFAICDVCGKTLSSKEKLKFHLRIHTGYKPYSCQYCGKCFTKKPILVEHVRVHTGEKPYVCDYCTKAFSQRSSLVIHMRGHTGEKPYPCQFCFKAFVAKAMLNIHLKTCKGFFHIAKTELTDILTGILPDGEEIFIHFVDEEEPNNIDIANDELIEEEEEILKLMYDDEDTNACEQETTTSKPDRKLQCNICGRSFKYLMRHLQCHGPHNCTECLINFETKEEYDDHMRQHVPNAEPFRCEECNVSYLTPTDIALHNFEHTQKYSCPLCDFTAKGRSKVTLINHIKRHEGKFGATCEICGQGFITEHFLKSHREIHEAIPKYECEFCNKKFTVHRYMYVHKTLNHKKEMFGIEEAFQCEVCGKRFTFEKSLKRHLSCIHKIGEDRTVECPICHKIIANNHNLKKHMRLHTGEKQFCCDICGRAFADKKYLTAHRNVHEKEKLRKVQAAGNQTFLENDEIEYLQLRNSQDSPPVDQTDDRIFFDEIYLNFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -