Rfer021955.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- zfh1
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000039.1:879340-882276[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 2.2 1.7e+02 3.3 2.5 2 23 15 35 14 35 0.91 2 18 0.00022 0.017 15.8 2.1 1 23 40 63 40 63 0.98 3 18 0.0033 0.26 12.2 0.5 1 23 69 92 69 92 0.95 4 18 0.00019 0.015 16.1 1.8 3 23 100 120 99 121 0.95 5 18 0.021 1.6 9.7 0.4 3 23 133 155 131 155 0.89 6 18 0.022 1.7 9.6 6.2 2 23 163 185 162 185 0.94 7 18 1.8e-05 0.0014 19.3 2.3 1 23 193 215 193 215 0.99 8 18 7.9e-05 0.0062 17.3 1.2 1 23 221 243 221 243 0.96 9 18 0.00012 0.0093 16.7 4.5 1 23 249 272 249 272 0.95 10 18 0.0037 0.29 12.0 0.5 1 23 293 316 293 316 0.92 11 18 0.89 69 4.5 4.7 1 22 322 343 322 345 0.74 12 18 0.016 1.3 10.0 1.0 3 23 358 379 356 379 0.89 13 18 9.7e-06 0.00076 20.1 0.5 1 23 385 408 385 408 0.97 14 18 3.9e-05 0.003 18.2 0.4 2 23 415 438 414 438 0.92 15 18 7.2e-06 0.00057 20.5 1.3 1 23 444 466 444 466 0.98 16 18 0.0013 0.099 13.5 4.1 1 23 473 495 473 495 0.99 17 18 2.5e-06 0.0002 22.0 1.4 1 23 501 523 501 523 0.97 18 18 3.5e-05 0.0028 18.4 1.9 1 23 529 552 529 552 0.95
Sequence Information
- Coding Sequence
- ATGAAAGCCAACTCGCTGAAACGTCATGCTGAACATCAAATTCAATGCAGAATATGCCAAAAACATGTTGATTCGTCGCGACTATATTTTCATATGAGATCCCATGCAGAGAGAAGATATAAATGTGATATATgcatgaaaaaatttaaagagaATTGGTATTTGAAGCACCATATACTGATGGTACATAAGAAGGAAACCAAACACCCTTGCGACATCTGTGGACAAATGTACTCTACGAGAAACTCCGCTGACATTCACAAAAGATCAGTACACATGAAAGATTTCACCGTTTTCTGTGAGGAATGCGGGAAGGGTTTTGTTAATGTAAATCAGTTGAACTTGCATAAAAAGAGACATCATAGAACTGAGACCGACCCGATCCAATATATCCATTGTCCCGTCCAAGGATGCAGTAAACAATACAAATCACAGGCAGCTTTGAAATATCATCTACCGACTCACCAGGACGATAGGAGGACATTGTACTGCAACCACTGTTCCAAGATCTTTCATCATCCTTTATCATTAAAACAACACGTAAAATTGAAACACAGTGATGGAATAGCTTGTGGTTTCAAGTGTCACTTGTGTGATAAGACACTAATGTCGTCCACTAGTCTAAGAGATCATATTCGGGTGCATACCGGAGAGAAACCATTCAACTGCGAATTCTGTGATAAAAATTTCAGTAGAAAATTACTGTTAAAAGTCCATCGAGTGGTCCACACCAAGGAAAAACCGTATTCCTGTAAAATATGCGGGAGATGTTTTACCCAACACGGTTCCATGAAAATTCATTTCCTGAAGGCTCATCCGCAGGAGGAATGGAGTGAGAATGGAAGGATAACATTTAAACACACGAAAACCGGAAAGTATTCATGTCAATTCTGCGGAAATCAGTTCACCAGCAACATCTTTCTGAAGGAGCACATCGTCTTAGTCCACACGCACGATTTTCGTTTTTACTGCAGTTACTGCGGTAAAGGTTTTTACATGGAGTGTCGAAAACGGTACCACGAGAAAAGAGTGCACATCAAGTTGATCCCAAGGAAACAAGTACCGTGGGATTGTGAGGAATGTGGCCGTCAGTTCGCCAACAAGTATACCTGCCAACAACATAAGATCCTAGCTCATCAAAGAGAAATCAAATATTACTGTGATAAGTGTGGTAAAGGGTTTCCTTTGCGTAGTTATCTACAACAACACGTGCAGGTAAACCACCCCCAAACAGAACGGTTGCCCTGCGACGAAGTTAATTGCAAGAGATCGTTCAAGACCAAAGATGCTTTGAGACGACACAAGATAGTCCATGACGAAAACCGAAAGTTTGTATGCGAGTATTGCCCGAAGGTGTTCATTCATATTGTTTCGTTCAAGCGTCATTTGAGAGAACACAAAAACGGAAGGAAATTGTACCAGTGCGAGGTCTGCATGAAGTGCGTATCGAGTACATCAAGCTTGCATGACCACTTGCGAACTCACACGGGCGAGAAACCCTTTCAGTGTTCGTACTGCGAGAAGAATTTTGTATCGAAGAAACAGCTAAAGAGCCATATTGTTGTGCACACGAAAGAAAAGAAACATATATGTCCAGTTTGCAATAAACGGTTCACACAACGGGGACCTTTGAAAGCTCATTTCAAGAAGAACCATCCCTCTGAAATCCTCTAG
- Protein Sequence
- MKANSLKRHAEHQIQCRICQKHVDSSRLYFHMRSHAERRYKCDICMKKFKENWYLKHHILMVHKKETKHPCDICGQMYSTRNSADIHKRSVHMKDFTVFCEECGKGFVNVNQLNLHKKRHHRTETDPIQYIHCPVQGCSKQYKSQAALKYHLPTHQDDRRTLYCNHCSKIFHHPLSLKQHVKLKHSDGIACGFKCHLCDKTLMSSTSLRDHIRVHTGEKPFNCEFCDKNFSRKLLLKVHRVVHTKEKPYSCKICGRCFTQHGSMKIHFLKAHPQEEWSENGRITFKHTKTGKYSCQFCGNQFTSNIFLKEHIVLVHTHDFRFYCSYCGKGFYMECRKRYHEKRVHIKLIPRKQVPWDCEECGRQFANKYTCQQHKILAHQREIKYYCDKCGKGFPLRSYLQQHVQVNHPQTERLPCDEVNCKRSFKTKDALRRHKIVHDENRKFVCEYCPKVFIHIVSFKRHLREHKNGRKLYQCEVCMKCVSSTSSLHDHLRTHTGEKPFQCSYCEKNFVSKKQLKSHIVVHTKEKKHICPVCNKRFTQRGPLKAHFKKNHPSEIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -