Rfer007680.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- lysmd2
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000327.1:176964-191264[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.2e-05 0.0025 18.5 1.2 1 23 418 441 418 441 0.96 2 13 0.00017 0.013 16.2 0.4 1 23 479 502 479 502 0.96 3 13 4.3e-05 0.0034 18.1 0.7 1 23 508 530 508 530 0.98 4 13 2.7e-06 0.00021 21.9 0.4 2 21 536 555 535 556 0.94 5 13 3e-06 0.00024 21.7 0.3 1 23 567 589 567 589 0.97 6 13 0.032 2.5 9.1 0.3 1 23 600 622 600 622 0.95 7 13 3.2e-05 0.0025 18.5 0.4 1 23 628 650 628 650 0.98 8 13 1.7e-06 0.00014 22.5 1.2 1 23 656 678 656 678 0.99 9 13 4.4e-06 0.00034 21.2 3.3 1 23 684 706 684 706 0.95 10 13 7.4e-05 0.0058 17.3 3.6 1 23 712 735 712 735 0.96 11 13 3.4e-05 0.0026 18.4 2.0 2 23 742 765 741 765 0.96 12 13 2.4e-05 0.0019 18.9 3.2 1 23 771 793 771 793 0.97 13 13 0.0029 0.23 12.3 4.4 2 23 800 822 799 822 0.97
Sequence Information
- Coding Sequence
- ATGTCTCTGTTATCGTTTTCGAAAAACGTGGACAGGGGTTCCTACGAGAAATTGTCGATAAGAGACAGCGCGCGCTCGCTGAAAAAATATGGATCAACAAGCAGTAAAACTGCTACCAAGGCAGAAAACTACCTTAAACACTTCGTTAGTAATAGCGACACATTGCAGGGAATTGCTTTGAAATATAACGTTACAATCGAACAAATACGAAGAGCGAACAAATTATGGGCCTCCGACAGTTTGTTTTTGAGGGAGTACCTGCTGATTCCCCAACCGGACAATGCCAATGATCTGCTGTCCCCAGTTGAAAACCAATCCACAAGCTCCCAATCGTCTCTGGCCAGCTCCAGCATAGAAAACCTGAACCAGAACCGAATGTCGGTGGGTAGCAGCACCCGGAGCAGTTTCGACGAAGAGAACATAAACGATTTCCTGAACAAAATAGACGCCTCCATCGCGAGCACCAAGGAGGTGGTCAAGAAAGTCACCAACACCAGCGAATACGGTTCCGAGTTCGAAACCGACCAGAAGAGACGGCCTCAGTCGCGCATCAAGCAGCAACAGTACCAGCAGCAGAACAACAACACAGCGCCCATGAACACGGTAGTGACCGTTCAGCAAGACAAAATGGACGCTGTAGTGAAGAAAGAACACGGCGAGGTTCAAACAAAAACGGAAGATACCGTTGTTTTAACTAATCTACCTAACGCACAGAAAGTCAGTTCAGAACAAAATGGTTCGtatctattgaaaaattatgtggAAAATGCGGGGACCGCTTTACAATTGACGTCTAACTGTGAAGACGGTGAATACACATATATAATCGAGAACCCCGGAGATTTTGAGGGAACGGAATTTGAACTTGCAGATGGAGAACACTATATAATCGAAGAGTATCAGCCAGAATATGATGAATCACAAGAAAAAGAGTATGAAACTTTTTATATTGAACATGTGGATTCCTCACCTGACgaagtGGAAGAAGTGTTCACAATATCTGGAGAAGGTACCGAGAGAACCGAGCAGGATGTTGAGTATTTAGAGACCGAGGAAGACAGTGAACCAGCACATGAGAAGCATAAAGAGACCCACCAAGTAAAAGAAGAAATCCTTACCATAAAACAAGAGGATGATCCACTTGAGGACACTGAACAGAACGAGAGTAATTTTGAGGAAGCAGAGTGTGAAAAtggtaataataatgataacgatgataatgatgatgatgatggtaaAGAGTTGGTGATGTATGAGTGCAGTATTTGTGGAAAAGGTTTCAGGACTCATACGgGAGTGAAAAGGCATTTAACTGTCACCCATTGGAAACATGATGAAGCCGGGAaacaaaataaggaaaataatgaTGTTCTGGCATTTTCCTTATGTCCCTGCTGTGGGGAACCATCTGATTCTGCTCATACATTGGGTGATTTTAAATGCGAACAGTGCGACAAGCTTTTCATACAGCAAAATTCTTTGGACAGGCATGTTAGTGTTGATCATCCAGTTGGTACAGAGTATATTTGCTACGAGTGTAAAAAACTCTACAAGACCAGGGATCTGTTAATCGATCACATGCGTATACATCCCATCAAGTCTGTAAAGTGCGATGGTTGTGGACGAGATTTCTCTCGAAAGTACCACCTGGAAAGGCACATTTTGCAAACTGGTTGTACTGGAGTGCCTTGTGCTGTTTATAATTGTCGAGTGTGTGGAAAAAGCTATGCTCGCAAGGATAATTTGGCGGAACATCTCAAAGGACACGCAGGCATCgcgaataaaatgaaaaagaagtTCCTTTGCGAGTTTTGCATGAAGGAATTCAATGGCATGGGACAATTAAATATTCACGTCAGAACTCATACAGGTGAAAAACCATATGCCTGCGACATATGCGAAAAGAGGTTTCCGTCGACGGGCGCCATGAAGAAACACAGACGCATGCACACCGGGGAGAAACCTTACACCTGCCAGACCTGCGGCAAGAAATTCGCGGCCAAAGAGACTCTCAACCGACACTGGAGGACACATACGGGCGAGAAACCGCACCAGTGCCAATACTGCGGCAAATCTTTCATACAAGCTTCCCAGTTGCGAGCTCACGTCTTCCATCACACCGGCGAGACGGCCTACACTTGTCCTCACTGTAATAGGGCGTTTACACGAAAACTGCGTCTTACCACCCACATTAAGTTCATGCACGAGGGAGCCGAGCCCATAACGTGTCCGCATAGCGATTGTACCAAGACGTTTTTCAGAAAAGAGGACCTTCAACGACACTGGCTCACGCACACCGGAGAAAAACcacACGAATGCGACGTCTGTCATAAGTCATTCGCCGTCAAGTCATCCTTGAGGATACACAAGCTGACGCATCGGACCGAGGCTCCTGTACGTTGTGAAGTATGTTGCAGGGCCTTTATCAGACAGGACTGTTTAATGAGGCACATGAGGTCGAAGCATCGAGACGTATTGGAGGATATCCTGGCTAATGCAGAGAAGAAACGTATCCAACAACAGCTGTTGAGGACGGTTTCCAACAACGATCAAAAAGAGTCCTTAAAGGATACGATCGTTTGGAACGAATTGACGTTAACAGAATCGATCAAGGAATTGTTAACGCTATTGGTAGACGAGGACTGCCTCTTGGAGTTCGGTCATCCCGAGGCGCCAGTAGATAAGGTCCTCGAGGCGGTCATCAAGAGATGCGGTCATTCGCCCGCATCGGACGTCGATTTCGATTATATAGGGAAACTGCGCCAGAACGCCAAGCTTCTGTTCACGGTGGTAATCGATGACGAACCAGTCAAAGAAATGCTTAACAAAAAGACCGTGGACGAAGTGATAGTGCACGTGCTGAAACTGGCCAGGAAGCAGTCTTCCAACGAGGAGGGGCAGGAGGGCGCTGAAGAAAAGCCCCAGGAGCTCCCGGAGGACGAGGACGCAGACGATCCCATGGAAGCGGAAGATGACGACGAGGAGGAGGAAATGTACTCCAGCAACTGA
- Protein Sequence
- MSLLSFSKNVDRGSYEKLSIRDSARSLKKYGSTSSKTATKAENYLKHFVSNSDTLQGIALKYNVTIEQIRRANKLWASDSLFLREYLLIPQPDNANDLLSPVENQSTSSQSSLASSSIENLNQNRMSVGSSTRSSFDEENINDFLNKIDASIASTKEVVKKVTNTSEYGSEFETDQKRRPQSRIKQQQYQQQNNNTAPMNTVVTVQQDKMDAVVKKEHGEVQTKTEDTVVLTNLPNAQKVSSEQNGSYLLKNYVENAGTALQLTSNCEDGEYTYIIENPGDFEGTEFELADGEHYIIEEYQPEYDESQEKEYETFYIEHVDSSPDEVEEVFTISGEGTERTEQDVEYLETEEDSEPAHEKHKETHQVKEEILTIKQEDDPLEDTEQNESNFEEAECENGNNNDNDDNDDDDGKELVMYECSICGKGFRTHTGVKRHLTVTHWKHDEAGKQNKENNDVLAFSLCPCCGEPSDSAHTLGDFKCEQCDKLFIQQNSLDRHVSVDHPVGTEYICYECKKLYKTRDLLIDHMRIHPIKSVKCDGCGRDFSRKYHLERHILQTGCTGVPCAVYNCRVCGKSYARKDNLAEHLKGHAGIANKMKKKFLCEFCMKEFNGMGQLNIHVRTHTGEKPYACDICEKRFPSTGAMKKHRRMHTGEKPYTCQTCGKKFAAKETLNRHWRTHTGEKPHQCQYCGKSFIQASQLRAHVFHHTGETAYTCPHCNRAFTRKLRLTTHIKFMHEGAEPITCPHSDCTKTFFRKEDLQRHWLTHTGEKPHECDVCHKSFAVKSSLRIHKLTHRTEAPVRCEVCCRAFIRQDCLMRHMRSKHRDVLEDILANAEKKRIQQQLLRTVSNNDQKESLKDTIVWNELTLTESIKELLTLLVDEDCLLEFGHPEAPVDKVLEAVIKRCGHSPASDVDFDYIGKLRQNAKLLFTVVIDDEPVKEMLNKKTVDEVIVHVLKLARKQSSNEEGQEGAEEKPQELPEDEDADDPMEAEDDDEEEEMYSSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -