Rfer020887.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- zfh1
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000339.1:302069-308556[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1 81 4.3 0.7 2 23 199 221 198 221 0.85 2 17 6.4e-05 0.005 17.6 2.3 1 23 275 297 275 297 0.99 3 17 3.6e-05 0.0028 18.3 0.3 1 23 303 326 303 326 0.96 4 17 4.9e-07 3.9e-05 24.2 1.5 1 23 332 354 332 354 0.99 5 17 1.3e-06 0.0001 22.9 0.5 1 23 360 382 360 382 0.98 6 17 0.0005 0.039 14.7 3.1 1 23 388 410 388 410 0.98 7 17 8.3e-06 0.00065 20.3 0.7 1 23 416 438 416 438 0.97 8 17 0.53 41 5.2 1.0 1 13 444 456 444 457 0.92 9 17 3.3e-05 0.0026 18.4 0.1 1 23 495 518 495 518 0.95 10 17 9.3e-06 0.00073 20.2 4.8 1 23 538 560 538 561 0.96 11 17 0.00024 0.019 15.7 5.6 1 23 592 614 592 614 0.97 12 17 6.6e-05 0.0051 17.5 6.1 1 23 620 643 620 643 0.94 13 17 0.0015 0.11 13.3 0.5 1 23 649 671 649 671 0.97 14 17 1.8e-05 0.0014 19.3 0.6 1 23 677 699 677 699 0.98 15 17 6.7e-06 0.00052 20.6 1.6 1 23 705 727 705 727 0.96 16 17 0.0038 0.3 12.0 6.4 1 20 733 752 733 755 0.94 17 17 0.013 1 10.3 0.1 2 22 759 779 758 779 0.94
Sequence Information
- Coding Sequence
- ATGATGAATATACAGACAGTATGCAGAATATGTGCCAATGAAAGTGATAGAAGGATTGAAATATTTAGTGAAGATGGAATAGCTAATGATTTAGCtaataagattaatttataCTTGCCAATTAAAGTCACCAGTACTGATAATTTACCAAAGCAGTGTTGTTGGCAGTGTACTTCTACAATACTAGCTTGGCataatttggttttaataagTGCAGAAGCTGATAAAAGACTAAGATCCCACCACTTACCTCACAAGCAGTTTGAAAATGTACCTTATACACCAGCAGAGGTCGATATTTCAAGAACCACGGCAGATAATTTAGATACGCCATCATTCTCCAAAATTCCACATTTGTTCAGTGGTTTAAATGAGGGAACAGGAATGTATGATGAAGTTGATCTAAAGTTTACCTTCACTACCAGTGATCAATATCCTTCATTCTTTGCATCTGAGAATCACAGACTGGAGCCAGATAAAATTAGCAATTACATCAGTGTCCGAAAAGATATTGTCATAGGAGAATCAGCAGCAAAGGATGGTATATTGACTTTAAGGAACATCGAAAATGGTGGTGAAGACAATGAAGGTTCAGTATGTCATTTATGCTCAAAGATTTTTGGTTCAGAATTGGATAAATTACAACATTTGAATGATAGTCATCGTGATGTTAATGTTGAAGAAGTTATGAAAGAAATTAATTCGCCGCCTATGAAAAGACCAACTCATCGTGCCGTCAAGCTTCTAATTAATAGGTCACAACAGAAGATCAACCAAGAACTATTGAATAAGGCTAAAGTGGTTGTGGATGATCGTGTATTTTATAAGTGTAAAGAGTGCGGTAAGAGCCTTCATTCcatgtatacatatatttggcATATGCGAATACATACCGGCGAACGCCCATACGTTTGTGATCTTTGTGGAAAGCAGTTTCGAGTATCTCAGGGTCTGGTTAGGCATCTGAAAGAGACACATCAGCGAATAAAGAATTATAAGTGCGATATTTGCGGTCGGTTTTTTTCTACTAAACGCAATATGGAAGAGCATCGGAGAATTCACACTAACGAACGTCCATACGTGTGCGACCTTTGCGGAAAAGCCTTTAAACAGAAAGCGTCCCTTTTTGTTCATAATCGATCGCATAGTTCGAATCTTCCATTTAAATGTATGGACTGCTCGCAAAAGTTTCGTACCAAACAGTCATTGCTTACCCATGTTACCAAACATACTGGAGAGAGACCATTTCCTTGTGAACTGTGTGGCAGGCAGTTTCGAGTTAAGTACGAGTTGAAGAGGCATAAACTGGTGCATTCAGAAGACAAACCCTTCAGTTGTAAGATTTGTGCTCAGACATTTAGGCAAAAAAGGATTAAAACGACCTTAGCACCGGCCTGTACAGACACGCAGATTCTCGTTTCAAGCCCTGGTAAAATCACAGAAAAAGCGCGCACGTCTACAGACTCAGACCAAGACAACCAGTATTTGTGCAACATCTGCGATGAGGCTTACGACCGTCCGGTTTCGTTGAAGCAACACCAGCGACAGGAACACGGCTTGGCGCCAGTAAAGTTCCGAAGGCGAAAGTGTGACATACCTACCAATACACAGTTTCAGTGTCCGTATTGCGAGAAGAGTTATTCGAGAAAACACGACATGGAAAAACACGCGAGGTTGCATCATCCGGAAGAGGATGTGCCTCAGCTGAAAAAGGACTTCATGAATGTCGTACCCGCAAGTTGTAAGGTGGAGCTGGCGTCGGGAAGGATGCAATACAATTGCGACTTTTGCGATAAGAGTTTCCAAAAGTGTTACAACCTGACGAGACATCGGACGATTCATACGAAGGTCAATCGGCACTGTTGTCATCTCTGCGGCAAGAATTTCAGGCTCAACAGCAACCTCATCAGGCATATCAACGAGTACCATCGCAATTTGCGTCGGTTCGCCTGTCCCACGTGCCCGATggtattcaaaaataaaaacaccagAGATCAACACGTGAACACTCATACGAACTCGAGGCCGTTCACTTGCGATGCGTGTGGGAAGTCTTTTAGGCAGGGTTCATCGCTTTACGTCCACAAACGGGTCCACTCTGACATCTATCCGTTTTCTTGCATGCTGTGTGGTAAGACGTTTCGGAGGAAGCAGAACTTGAAAGAGCATAATTTGATTCACAGCGGGTATAAGCCGTTCAAGTGCGATCAGTGTTCGATGGCTTTTAGGCAGAAACACGAATTGAAAAGACATAGCAAGTGTCATAATACGGTGGTATGTGACAGGTGTGGGACATATTTCGGACAGGCCAGAAGTCTTAGCGTACACAGGAGGAAATGTGAGCAATCCTTGGAGCAGTTGTCGAAAGCGACGGAGTAA
- Protein Sequence
- MMNIQTVCRICANESDRRIEIFSEDGIANDLANKINLYLPIKVTSTDNLPKQCCWQCTSTILAWHNLVLISAEADKRLRSHHLPHKQFENVPYTPAEVDISRTTADNLDTPSFSKIPHLFSGLNEGTGMYDEVDLKFTFTTSDQYPSFFASENHRLEPDKISNYISVRKDIVIGESAAKDGILTLRNIENGGEDNEGSVCHLCSKIFGSELDKLQHLNDSHRDVNVEEVMKEINSPPMKRPTHRAVKLLINRSQQKINQELLNKAKVVVDDRVFYKCKECGKSLHSMYTYIWHMRIHTGERPYVCDLCGKQFRVSQGLVRHLKETHQRIKNYKCDICGRFFSTKRNMEEHRRIHTNERPYVCDLCGKAFKQKASLFVHNRSHSSNLPFKCMDCSQKFRTKQSLLTHVTKHTGERPFPCELCGRQFRVKYELKRHKLVHSEDKPFSCKICAQTFRQKRIKTTLAPACTDTQILVSSPGKITEKARTSTDSDQDNQYLCNICDEAYDRPVSLKQHQRQEHGLAPVKFRRRKCDIPTNTQFQCPYCEKSYSRKHDMEKHARLHHPEEDVPQLKKDFMNVVPASCKVELASGRMQYNCDFCDKSFQKCYNLTRHRTIHTKVNRHCCHLCGKNFRLNSNLIRHINEYHRNLRRFACPTCPMVFKNKNTRDQHVNTHTNSRPFTCDACGKSFRQGSSLYVHKRVHSDIYPFSCMLCGKTFRRKQNLKEHNLIHSGYKPFKCDQCSMAFRQKHELKRHSKCHNTVVCDRCGTYFGQARSLSVHRRKCEQSLEQLSKATE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -