Rfer022042.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- -
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000039.1:1062614-1073399[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 0.14 11 7.0 3.1 1 23 39 61 39 61 0.97 2 31 1.1 86 4.2 0.2 1 23 79 101 79 101 0.96 3 31 0.02 1.6 9.7 0.1 1 23 103 125 103 125 0.89 4 31 0.59 46 5.1 2.1 2 23 132 156 131 156 0.84 5 31 0.023 1.8 9.5 3.6 1 23 162 185 162 185 0.96 6 31 0.14 11 7.1 2.0 1 22 191 212 191 214 0.88 7 31 0.0047 0.37 11.7 0.7 3 23 227 248 226 248 0.94 8 31 2.8e-05 0.0022 18.7 0.8 1 23 259 281 259 281 0.95 9 31 0.15 12 6.9 0.9 1 14 287 300 287 303 0.87 10 31 0.0013 0.1 13.4 0.3 2 23 381 402 380 402 0.97 11 31 0.057 4.5 8.3 0.4 3 23 410 431 408 431 0.94 12 31 4.5e-05 0.0036 18.0 0.7 2 23 490 511 489 511 0.96 13 31 0.011 0.84 10.6 0.3 1 23 529 551 529 551 0.97 14 31 0.064 5 8.1 0.9 1 23 553 575 553 575 0.96 15 31 0.025 2 9.4 0.2 2 23 615 637 614 637 0.96 16 31 0.023 1.8 9.5 0.7 1 23 643 666 643 666 0.94 17 31 0.00062 0.048 14.5 0.3 2 21 678 697 678 698 0.93 18 31 0.00017 0.013 16.2 1.9 1 23 713 735 713 735 0.98 19 31 0.0092 0.72 10.8 0.3 1 23 741 763 741 763 0.90 20 31 4.7e-06 0.00037 21.1 2.1 1 23 769 791 769 791 0.96 21 31 3e-06 0.00024 21.7 1.9 1 22 798 819 798 819 0.97 22 31 0.063 4.9 8.1 4.2 1 23 898 920 898 920 0.98 23 31 0.013 1 10.3 0.4 1 23 938 960 938 960 0.97 24 31 0.18 14 6.7 0.0 2 23 963 984 963 984 0.94 25 31 0.0057 0.45 11.4 1.4 1 23 1019 1042 1019 1042 0.96 26 31 8.4e-05 0.0066 17.2 1.8 1 23 1048 1071 1048 1071 0.95 27 31 9.1 7.1e+02 1.3 0.3 5 23 1086 1105 1083 1105 0.86 28 31 0.00025 0.02 15.7 1.0 1 23 1116 1138 1116 1138 0.97 29 31 3.8e-05 0.003 18.3 0.9 1 23 1144 1166 1144 1166 0.98 30 31 1.4e-06 0.00011 22.7 2.9 1 23 1172 1194 1172 1194 0.97 31 31 7.4e-05 0.0058 17.4 1.6 1 21 1200 1220 1200 1221 0.94
Sequence Information
- Coding Sequence
- atgctTCTAAGTCCGTATTCAGTTACTTTCACCAAGCAGCTGTCACCAATAGACAAGGATGCTATTAGTACCAAAGTTGTTGAGGAAGTTAAAGCTATTTCTAAAAAACCATATCATAAGTGTCAGGTGTGTTCCCGGACTTACCCTACCCTGCGCTTGTTAAATTTTCATCGGAAAATCCATAAAACGGACATGCAGGAACCGCCATATTTGTTCGACACTATCAAACAAATGTACCGTTGCAGCCTGTGTTCGGTGAAGTTCTTGAATGAACCTGACGCTTTAGAACACATTAAAACTCACTGGTACATTTGTCCGGTATGTAATGAAGGATTTTCCAGGCCTATTCTCTTAGGCTGTCATATGGCTGAGCACAATCAGGACGGCAACGTCAGTTGTCCATTGTGCGATCATAAGTACAAAACTCCATACGGAAATACGCTGCAAGCCCACATAAGGAAAACTCATCAAAAGCTTGATACCCATTATTGTCAACATTGTAACTcatcatactacaaaaagaaTCAACTAGTCGAACACATCAATGTAGTCCATCTGAAGCAAGATCCCCATAAATGCATCGTCTGCGACAAGAAATTCATATTGAGCACTAGTTTATACAAACACCAGGTAgataaacataaagtatatgTTGATGGTGATCTACCGAACAACTTCTGTCTTATATGTAATACTACCTTCAAAAAAGTCGCAACGCTAGAAAGGCATTTGCTGGAAAGACATCAACAACCAAAGATTAAGAAGCAGGAGACTTTCCTGTGTGATACCTGCGGGAAAGCCTTTGCATACAAGCAAAGTCTCAGGTCGCATCAGAAGGGGCATGAAGGTATCAAGCCCTATAAGTGTTCTTTCTGTTCCAAAACCTTCAAACTAAACTCTCTAAGGGTAAAAAGGCGGAGACGATTATCCAAACCCGAAAAGCTGGTAGAATATCCCTGTTCCAATTGTCCCCACATCTCTTTAACACAAAGAATGGCTAATCTTCACAAACACTTCCATAACGAGGATTCTCTATTCGTATtcgacaaaacaaaacaaattttcagTTGTATTTTCTGTACTGTTAAATGTTCCTCTAAAAAGGAGATCAAGGAACACTGTGTTGTGGCTCATTCCATTAAATGTTCAGAATGCAACGAAAATTTTCGGAATCCTTTTTTTCTTGGGCTTCACATGGCTCGGCACGATCATGCTGAACACATTTTCTGCCCCTTTTGCGACTATAAAGGAACTTTCGCTGTTACTTTGCGAAAACACATCACTAACAcacattttgatataaaaagtaACGAGGTAAATCTAGATACCGTGGATGTTCTCAGTGATGAAAAGGAAGAAGTTAACGGAGGCACTACCAAGGTTGAAAATAGTAAGAATAACTTGGAGGCTTTGAGGCGTGAACAAAACGCCTTGAGGAAGCGAGAACAAAGGCAAAAGACccagttaatttgtaaattatgcgGAAAAAAATACCCCACTTTGAAAGATCTCAGAAATCATCGAAAAGTGCATAAAGCTGAGAGGTTAGAATCTTTATACACCTTCAACTCtttgagaaaattattttcatgcgACACATGTCTGCAAGAATTCCGAGACGAAGATCAGATACAGAAACACGTGGAAAGTCATAGTTATTGTTGCCCTACGTGTTCGACTCAGTTCAAGAAAGCCTTATTATTAGGCTTGCATATGGCTGAACACAACGATAAAGGAGAGATCAGTTGTCCTTTGTGTAATCACGATTTCAAGACGTTGTGTAAGAGCAGACTACTAAGGCATATCAAGCAGAAACACCAGAAGGAACGACCAAAAACCAGTCAGTGTGAATATTGCGGGTCTTCCTACTTATCAAAGCAAATGTTAGAAGACCATATTAAAGTGGTGCATCTCCAGAAAGAACCTTATCGATGCATCGTATGTGGGAACACTTTTACACTGAAATCAAGCATGAGAATACATCAAATCAACAAACACAGAGTAGTGGATGAAAGTGAGCTGTCGTCAAACTATTGCACCTTGTGTAAGATGTCGTTCAAGAAACCGTCTTCCTTGGCTAAACACTTGGAAATGAAACGTTGTATTCCCACGCCCAGGGTAGAACGACAAGGCCATTTCGTGTGCGATTTATGCGGCAAAGAGTTTCGTTTCTATAAAACATTCAATCTTCATCAGAGAGAGCATGCAGGCGACAAACCATATAAATGCTCGTACTGTCCCAAAGCATTTGTCATTAATTCGAAAAGATTGGCTCACGAAGTCTCCCACACAGATACAAGACCATTCTCTTGCGAGACCTGTGGGCAAAGCTACAAAACATGGAAACATCTTAGGAGACACCTGGTGGTCCACGGATCCAATGTACTGACTTTTAGATGTCATTTTTGTGATAAAGAATTTTCTACGAAAGACACCCTCCGAGCTCACGTTCGAACGTTATGTGACCGATACAAGATTCGACTGGTTCATTTCGCTAATGCCGAAAATGGGAAGGTTGCCGTTGCGAATGCGAATGAACTgcaaaaaaacatcgatattatAGAGAAGTATCGGAAAGAACAGACGGTGTTGAAAAAGAAACGTAGGCGAAACGACAAACGAACAACATCAAATTTGTTGAGGAAGAAAAGAAACGGCGACGACAcgaggtttattaaaaaagaaaacggtTATGTGTGTTCTGTTTGTGATAAGCATCTCAACTCGAAAAGACTGATGAACTTGCATAAGTGTGTACATAAATTATTGGAAAAAGAAGCACACTACAAGAAGAATATGTCGAGAAACTCATTCGTTTGTAATTTTTGCAATACCGAATACCCATCGGAGGATAAAATCCAAAACCATATTCAACAGCACGAGGAGGTTTGTCGTGAATGTCAACTGTCTTTCCCCAACGCCTTTGTTTTGGGTATACACATGGCAGAGCATGACGACGACGAGAAACTGTGCTGTCCATTTTGTCATTACAAGGGCGATCTTTATCATTATCTGAAAAATCATCTCTTTGCCATACATTTCAAGACGAAAATATTTCGGTGCGACAGTTGTGGCGTGACGTACAGTGCCAAGACTCATCTGGACGAGCACATTCGATTCCAGCATGACAACATGGACCCGTACTCGTGCGTGGTGTGCAACAGGAAGTTTATCTTCAAGAGCAGCTTGAGAAAACACCAAATCAACCAGCACAGACCGTTAATTGACGGCGACGTTCCATCGAACTACTGCATCCTGTGTAAAAGGGTCTTGCACAGCGTTGAGTCGCTGGAGAAACACATCGCGGACATACACACCAACGTAAAGCCGAAGAACACCGAGCGATTTGTTTGTGATATATGCGGAAAGGATTTCTCTCACCGACAATCTTGGCTGTTACACACGAAAGGACATAGCGGGCTGAAGCCGTACAAGTGCAAATTGTGTCCCAAGTCGTTTAAGGTCAGGGCATTTCTGACGGTACACGAAAAGATTCATTCCGACGAAAAACCTTTCGCCTGCGAGAACTGTGGTACTTGTTTCAAAAGGAAAGAAGGACTAAGGAGACACCTACAGACTCACACCGATATTAAGCCCTTTGCTTGCACGAATTGCCCTAAACAGTTTCGACGACGAGAACATTTGAGACTCCATTTGAAAAGCTGCAATAAAGGAATCAAAATGAATTTGGATTTATAG
- Protein Sequence
- MLLSPYSVTFTKQLSPIDKDAISTKVVEEVKAISKKPYHKCQVCSRTYPTLRLLNFHRKIHKTDMQEPPYLFDTIKQMYRCSLCSVKFLNEPDALEHIKTHWYICPVCNEGFSRPILLGCHMAEHNQDGNVSCPLCDHKYKTPYGNTLQAHIRKTHQKLDTHYCQHCNSSYYKKNQLVEHINVVHLKQDPHKCIVCDKKFILSTSLYKHQVDKHKVYVDGDLPNNFCLICNTTFKKVATLERHLLERHQQPKIKKQETFLCDTCGKAFAYKQSLRSHQKGHEGIKPYKCSFCSKTFKLNSLRVKRRRRLSKPEKLVEYPCSNCPHISLTQRMANLHKHFHNEDSLFVFDKTKQIFSCIFCTVKCSSKKEIKEHCVVAHSIKCSECNENFRNPFFLGLHMARHDHAEHIFCPFCDYKGTFAVTLRKHITNTHFDIKSNEVNLDTVDVLSDEKEEVNGGTTKVENSKNNLEALRREQNALRKREQRQKTQLICKLCGKKYPTLKDLRNHRKVHKAERLESLYTFNSLRKLFSCDTCLQEFRDEDQIQKHVESHSYCCPTCSTQFKKALLLGLHMAEHNDKGEISCPLCNHDFKTLCKSRLLRHIKQKHQKERPKTSQCEYCGSSYLSKQMLEDHIKVVHLQKEPYRCIVCGNTFTLKSSMRIHQINKHRVVDESELSSNYCTLCKMSFKKPSSLAKHLEMKRCIPTPRVERQGHFVCDLCGKEFRFYKTFNLHQREHAGDKPYKCSYCPKAFVINSKRLAHEVSHTDTRPFSCETCGQSYKTWKHLRRHLVVHGSNVLTFRCHFCDKEFSTKDTLRAHVRTLCDRYKIRLVHFANAENGKVAVANANELQKNIDIIEKYRKEQTVLKKKRRRNDKRTTSNLLRKKRNGDDTRFIKKENGYVCSVCDKHLNSKRLMNLHKCVHKLLEKEAHYKKNMSRNSFVCNFCNTEYPSEDKIQNHIQQHEEVCRECQLSFPNAFVLGIHMAEHDDDEKLCCPFCHYKGDLYHYLKNHLFAIHFKTKIFRCDSCGVTYSAKTHLDEHIRFQHDNMDPYSCVVCNRKFIFKSSLRKHQINQHRPLIDGDVPSNYCILCKRVLHSVESLEKHIADIHTNVKPKNTERFVCDICGKDFSHRQSWLLHTKGHSGLKPYKCKLCPKSFKVRAFLTVHEKIHSDEKPFACENCGTCFKRKEGLRRHLQTHTDIKPFACTNCPKQFRRREHLRLHLKSCNKGIKMNLDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -