Rfer022051.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- Znf711
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000039.1:946282-952224[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.1e-05 0.00084 20.0 0.7 2 23 38 59 37 59 0.97 2 19 5e-05 0.0039 17.9 2.6 1 19 65 83 65 88 0.95 3 19 0.013 1 10.3 0.7 1 23 94 116 94 116 0.98 4 19 0.0013 0.11 13.4 0.2 2 23 123 145 122 145 0.94 5 19 1.8e-05 0.0014 19.3 2.2 1 23 150 172 150 172 0.97 6 19 0.0065 0.51 11.2 2.6 2 23 183 205 182 205 0.95 7 19 5.2e-05 0.0041 17.8 0.6 1 23 212 234 212 234 0.97 8 19 6.2e-06 0.00048 20.7 0.6 3 23 242 262 240 262 0.97 9 19 7.8e-07 6.1e-05 23.6 4.2 1 23 268 290 268 290 0.98 10 19 0.0011 0.087 13.7 0.2 3 20 344 361 342 363 0.95 11 19 0.00014 0.011 16.5 0.5 2 23 376 398 376 398 0.96 12 19 0.49 39 5.3 0.8 6 23 408 426 408 426 0.98 13 19 0.034 2.6 9.0 1.3 1 23 438 461 438 461 0.91 14 19 0.0037 0.29 12.0 3.8 1 23 467 489 467 489 0.96 15 19 0.00021 0.016 16.0 0.2 1 23 501 524 501 524 0.96 16 19 0.0043 0.34 11.8 0.4 1 23 536 559 536 559 0.94 17 19 7.3e-05 0.0057 17.4 2.9 1 23 565 587 565 587 0.92 18 19 3.5e-05 0.0027 18.4 0.9 1 23 593 616 593 616 0.97 19 19 2.6e-05 0.0021 18.8 2.6 2 23 624 646 623 646 0.97
Sequence Information
- Coding Sequence
- atgaaAATATGTAGTACATACGGATTGAAAAGaaTAGTAAAAGTAGAAATAAAAGAGGAGAAATTCGATGACGATTTCGATCCATTGAACAAGCCATCCGGCAAAGAGAAATCGTGCCCGGTATGCTCGAAGGTCCTGAAAAATAATTGGTACTTGAAAAAGCACATGCTCACTCATTCGGAGGATCGACCCCATCCTTGTCCTAAATGCAACAAGAAGTTCAAAACTTCTTATCAGTTGAAAACGCATGATGTGCGGATGCACGGAGAACTACAGTATTTCGAATGTGATTTTTGCAGCGCGAAACTCAGATCAAAGGGTTCCTGGATGATACATAGACGTAGGCATTTGAAGGAATACGTAGTTAAATGCGAGATGTGCAATATGGGATTCGTGACCAATCAAGAGTACATCAATCATATGGGTTCGAAGCATGGGGCTGGTGGGCACATGTGCAACATATGTGGTCGCACTTGTTATGATAAGGCAGCTCTTCAAAGTCATATGGCTCGACATGCGGAAGGTTATAACGAAAACACCAACATACGCTGTGAAATATGCAACAAAACGTTTCTACAAGAACGATATCTTCGACACCATTTCCAACGCATTCACTTAAACGGAGGACAAAGATTCATTTGTGACTTATGTGGCAAAAAAGTCAATTCCAAACGCTCACTTAGAGATCACATGTACATCCATCAAGGAATAAAGCCATTAGCGTGCAAAGAGTGCGGTAAATCCTTCGGTTTGCGTACAACCTTGAAGCTACACATCCGGACGCATACCGGACAAAGGCCATATCATTGTACGGTGTGTGGAAAGTCCTTCACGCAACGTAGTCCGCTTACAGTGCACATGAGGCATCATACGGGCGAAAAGCCGTTAGAAAACAAGAAATACTATACGAGACGGAAATCGAAGAAAATCGGAGAGGACGCCGACACCTACTCGGAAAGCTCGTCAAACTCCACCATTAAACTGGAAAGCGACTATATCGAGGTGAAAATCAAATCGATCACGTTCTGGTGCCAGAACTGCAACGCGAAATTCACCAGCGAGGACGATCTTCAACGGCACATCGAACAGAAATCGTGCGATCCGGAACCGGAAGTGAACGAGAACGTTTGCAGTATATGCGAGAAGGTATTCAAGGAGGTGAAATATCTACGTATTCACATGAAGAACTTTCACGAGGACCCTAAGCCTCGATATGTTTGCTGTAATCGCGTGTATTCGATTAAGGAGAAGTATGAGAAACACCGGAAGAAGTTTCACAATGATCAGCTCGATCGGCAGCCGGACGGTTCATATTTgtgtaaatattgtaataaaacttTCCAGGCTTTTCAGAGCATCAATGGTCACATTAACACCTATCACACGAAAGAAACGTCTTATCTGTGTAACGTTTGCGGGAAGAAATACTATTCTCTTACCGTTTTACATCACCACGCTCGTACCCACACCCAAGCGGAAGAGATGAAAATCAAGGTAGTGTTCGCGTGTCCTTCTTGCAGCAGAGAATTTCCAACCAGCGACTCTCTGGAGGCTCATAAAACAACCTCGCACACCCAACACTACGATAAACTGGAAGATAGCCGTTTCAAGTGTAAATACTGCGACCGAATATTCATAGCTCGAATATCAGTGGAGAATCACGTAAGCAGTAGTCATCTCCAAAACAAAATCTTCCTGTGCGATAACTGCGGTCGCCATTTTTATACTCAATCTTCCCTGAAGAAGCACGAAGTCTCCCACATTACCGAACGAAACTTTCCCTGTCCTCATTGCCTGAAAAAGTTTCGAATCAAGGCCGAACTAAGCAAACACATCAAGGTTGTGCATATGACCGGAACGAGCAAGTCCACTTGCAGTTTTTGCTTGAAAACGTTCAAGAACGAGAGCTCGCTGAAAAATCACATCAACACCAAGCACCGTAACGAGGAAAACGGTGTTAAATCGACTTCGAACTCAAACCCGACTGATGATATCGAGAGTAATATAGAGGAACTCTTTCGCGATAGTACTCTGAAAATGGACGATATCGAAAACAACGGACAGAATCAGGTGTTCGATCTGACCAGTGAGATATTCGACGAGCAAGATGCTCCAGTAGAAGAAGCGAGCGAAAGTGAAGAGATAATGATATACGAGATATATAACTGTTGA
- Protein Sequence
- MKICSTYGLKRIVKVEIKEEKFDDDFDPLNKPSGKEKSCPVCSKVLKNNWYLKKHMLTHSEDRPHPCPKCNKKFKTSYQLKTHDVRMHGELQYFECDFCSAKLRSKGSWMIHRRRHLKEYVVKCEMCNMGFVTNQEYINHMGSKHGAGGHMCNICGRTCYDKAALQSHMARHAEGYNENTNIRCEICNKTFLQERYLRHHFQRIHLNGGQRFICDLCGKKVNSKRSLRDHMYIHQGIKPLACKECGKSFGLRTTLKLHIRTHTGQRPYHCTVCGKSFTQRSPLTVHMRHHTGEKPLENKKYYTRRKSKKIGEDADTYSESSSNSTIKLESDYIEVKIKSITFWCQNCNAKFTSEDDLQRHIEQKSCDPEPEVNENVCSICEKVFKEVKYLRIHMKNFHEDPKPRYVCCNRVYSIKEKYEKHRKKFHNDQLDRQPDGSYLCKYCNKTFQAFQSINGHINTYHTKETSYLCNVCGKKYYSLTVLHHHARTHTQAEEMKIKVVFACPSCSREFPTSDSLEAHKTTSHTQHYDKLEDSRFKCKYCDRIFIARISVENHVSSSHLQNKIFLCDNCGRHFYTQSSLKKHEVSHITERNFPCPHCLKKFRIKAELSKHIKVVHMTGTSKSTCSFCLKTFKNESSLKNHINTKHRNEENGVKSTSNSNPTDDIESNIEELFRDSTLKMDDIENNGQNQVFDLTSEIFDEQDAPVEEASESEEIMIYEIYNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -