Rfer006924.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhynchophorus ferrugineus
Gene Symbol
-
Assembly
GCA_014462685.1
Location
JAACXV010000016.1:3834625-3840579[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.017 1.3 9.9 0.2 2 23 137 158 136 158 0.97
2 16 8.7e-05 0.0068 17.1 1.4 2 23 165 186 165 186 0.97
3 16 8.7e-05 0.0068 17.1 0.8 2 23 194 215 193 215 0.97
4 16 0.0012 0.092 13.6 4.6 1 23 362 384 362 384 0.99
5 16 2.9e-06 0.00023 21.8 4.3 2 23 391 412 391 412 0.96
6 16 0.00044 0.034 14.9 3.5 2 23 429 451 429 451 0.96
7 16 0.0022 0.17 12.7 4.4 1 23 560 582 560 582 0.96
8 16 0.00034 0.027 15.3 1.4 1 23 588 611 588 611 0.95
9 16 1.3e-05 0.001 19.7 1.6 1 23 616 638 616 638 0.97
10 16 0.00012 0.0096 16.7 1.3 1 23 647 669 647 669 0.98
11 16 6e-08 4.7e-06 27.1 1.4 1 23 676 698 676 698 0.98
12 16 2e-06 0.00016 22.3 1.6 3 23 710 730 708 730 0.96
13 16 8.3e-05 0.0065 17.2 4.3 1 23 736 758 736 758 0.99
14 16 3.9e-05 0.0031 18.2 1.7 1 23 764 786 764 786 0.96
15 16 8.6e-07 6.7e-05 23.4 0.4 1 23 792 814 792 814 0.99
16 16 0.00046 0.036 14.8 0.1 1 22 820 841 820 844 0.91

Sequence Information

Coding Sequence
ATGATTTCTGAGGATATTCAGTTAATGATAGACAAAATTTGTCGATCCTGTATGTGTCAACGTGCCGAAATGtataatgtttttgaaaaaactgCGGGATCAACTGATGAACCAATACTTCTATCTGATATGTTGACGGCTTGCACCTCTTTGgagGTTGTAGCAGGAGATGGATTACCATTTTTACTTTGTATTACTTGTGAGTCTAAGTTAAATTCTGCATTTGAGTTTAAACAACAATGTGAGAAATCAGATTCTGCATTAAGAGAAATAGCTAATAAAGCAGATTCCCAATCAAAAAAGGAAGAAAGTATCATTATTCAACCTGATGTACATGAAGACATTTTTGaagatgatGAAGATGATTTGCCTCTAGCTAAAAGATTTAAAACTGATATAGCAGCTTTAACATGTGTGTATTGTTTGCAAGTTTTACCTTCCAGGAAAGGACTGcaaaatcatattaaatcaCACATAGGAGACAATCTAAGATACTGTCCTATATGTCCCACAAAATATAATCGTGGAAATCATTTAATGAGACATATAAAAACACATGATAAAGAAGGAAATAAAGTatcttgtaaaatatgttttgaaaagTTTTCACTGGCTGTAGATTTATTTAAGCATATGAGAAAACACATTGATGAGGTCCAAAAGAAGTGTTTACAAgaacaagaaaaagaaaaaattatattagaaattaaacatGAAAAAGATGATGATTTAGTGAAAAATGAGATAGATAGAAGTATTGAACTTGAAGCTGAAACATACCTAAAGGAGAACCAAcatgataatatcaataatacaaTTGATGAAGTTGATGTTATTCAACCAGAAGAAGATAACATTGACAAAAATATCAAGTCAAAGGATGAAGAAACAATGGACATTCCTCTTAGTCAATTTCCATTTAGTGATGATGATcatgataatgataatgaacATATTGAACaagataatgatgatgatgtgGATTTTGTTTACAAGGATTATGAGGACAAGACTAATGAAGAATCTACAGAGGTCCAGCCAAAAAGGAAAAGAGGGAGGCCAAAGAAAAAGGATTCAACATTATATGAATGCAAAGAATGTCATAAAATACTAACCACCTACTGTGGTCTTCGAATACACTTAAGAAGGCATACAGGTGCAGATTTAGCCAGTTGCAAGctCTGTGATAAGTCATTTACAAAACAAAGTCATCTAAATAGACATCTAAAAGCCCATGGTATTTTAAGcaacaaaaatgtttcaaaaggAGATAAGAAGattagaGAGTGTGAATTTTGCGATaggaaatttaaatacaaaaaaagttttctacACCATATGCAAGTAGAACATGGAATGTCAGATATAGAAAGTGAATTAGAAAAAAGCGAACTGGAATTTTCTAATAATCATAATGAATTACGGATACATGAAGaaatgaatacgaatTGCCGAAACAATGGTGATTCATTACCAAATCAATCCTTAACAAAAGTTTTGGAAAATGAAGAATTTGGTGTACCAGGACTTGAAGACATTAGTACAaaacAAGGAAACGATGAAAATCGAGAAACCAATGGTGAACCGTTGGTGGAGGTAATAGAAAAATTAGATGGTAATGAAGAATTTGTTGCTTCCACTGTAGAGGATGTCGATtccaaaagaaaaatgaaagtTCACTCTTGTCATGTATGTGAAGCTCAATTTGCCAAAGCTAATCACCTTACGAGGCACATGACACTTCATAGAGCTGTGTTAACACACAAATGTGACCGGTGTGATCAGGCATTCTATACAGAAGATCTGCTAAAACAACACATAGAACAACAACATATTAACAAACCGTATATATGCACCACATGTAATAAGCCATTTAGTAGAGGAGAACATTTAATTCGTCATTTAAAACTCCATCAAGCCTTAACAGATGAAGGGCAGCATAAGTGTTCGATATGTGAATTGTTATTTGCAAGATCTGATCTGTTAGCTAGACATACCAAAACTCATCTAATGCAGGATAAAAGGCACGTTTGTAATGAATGTGGAAAAGCTTTTAACCgattagataatttaaaaacccACCAGAGGATACACACTGGTCTGAAAGACAACTCAAAGTTGCATTTATGTGTATATTGTGGAAAAGAATTCAACAATTCTAGCAATATGATCGTCCATATGAGGCGACATACAGGCGAAAGACCGTATAAATGCAATGTATGCGGTAAAGGATTTCCGAGATCTCATGATCTCAAGTGCCATGAAAGGACCCACTCTGGTGAAAAACCATACTTATGTACATTATGCGGAAAGTCCTTCAACAAGAGCAATAAACTGCTTAGGCACAGTAGAGTTCATACCGGTGAGAGGCCCTATGTATGTAGCATTTGTACTAGGGCTTTTACACAGTCCAACGATTTGGCTCTGCATATGCGCAGGCATACTGGTGCACGGCCATATGCCTGTGGAGTTTGTCCCGCAAGGTTTATACAATCTGGACAGCTTAAAAACCACCGTCGAGCCACCGGTCATTGGATGGAAACACAACCCGATTTAAAGGGTGGTCATAGagTTGAGCCTGTAACTACAGCAGTGGAACCAAtgccaattaaatttaaaacgttCGGAAAAAATAGACCCGTTAAAATAGAGGATGATACATTACAACAACAACTGCAACAGCAGCAGGTAGAACAAACAATAGAACAGCAACCTCAACTGACACATTTACAAGGCCAGCCTCAGAGGATACTCATGGGCATTATGAGTAACATCAAATTACCAAATGATGGGCAACCATTGATAATTGATGGCAATAAGTTGGTGGAATTACCAGGTGGACAATTAGGTTTAGTTACCCTACCCACTGTCATACAGGGGGCTAATGGGGaagaaattaaactaaaaacagAAATAGGTAGTTTTAATATAGCGCAAGTAGATGAGCTAGATAAAAATGATATAGTTAGTACCTCAGGTACCTTCCATGAAGGTGATTCTGTTACATTTTCTACAGTACAAACATCCACAACATATACCTCAGCCGAAAATTTCACATTTCAAACCTTTAATTAA
Protein Sequence
MISEDIQLMIDKICRSCMCQRAEMYNVFEKTAGSTDEPILLSDMLTACTSLEVVAGDGLPFLLCITCESKLNSAFEFKQQCEKSDSALREIANKADSQSKKEESIIIQPDVHEDIFEDDEDDLPLAKRFKTDIAALTCVYCLQVLPSRKGLQNHIKSHIGDNLRYCPICPTKYNRGNHLMRHIKTHDKEGNKVSCKICFEKFSLAVDLFKHMRKHIDEVQKKCLQEQEKEKIILEIKHEKDDDLVKNEIDRSIELEAETYLKENQHDNINNTIDEVDVIQPEEDNIDKNIKSKDEETMDIPLSQFPFSDDDHDNDNEHIEQDNDDDVDFVYKDYEDKTNEESTEVQPKRKRGRPKKKDSTLYECKECHKILTTYCGLRIHLRRHTGADLASCKLCDKSFTKQSHLNRHLKAHGILSNKNVSKGDKKIRECEFCDRKFKYKKSFLHHMQVEHGMSDIESELEKSELEFSNNHNELRIHEEMNTNCRNNGDSLPNQSLTKVLENEEFGVPGLEDISTKQGNDENRETNGEPLVEVIEKLDGNEEFVASTVEDVDSKRKMKVHSCHVCEAQFAKANHLTRHMTLHRAVLTHKCDRCDQAFYTEDLLKQHIEQQHINKPYICTTCNKPFSRGEHLIRHLKLHQALTDEGQHKCSICELLFARSDLLARHTKTHLMQDKRHVCNECGKAFNRLDNLKTHQRIHTGLKDNSKLHLCVYCGKEFNNSSNMIVHMRRHTGERPYKCNVCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHSRVHTGERPYVCSICTRAFTQSNDLALHMRRHTGARPYACGVCPARFIQSGQLKNHRRATGHWMETQPDLKGGHRVEPVTTAVEPMPIKFKTFGKNRPVKIEDDTLQQQLQQQQVEQTIEQQPQLTHLQGQPQRILMGIMSNIKLPNDGQPLIIDGNKLVELPGGQLGLVTLPTVIQGANGEEIKLKTEIGSFNIAQVDELDKNDIVSTSGTFHEGDSVTFSTVQTSTTYTSAENFTFQTFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-