Rfer022029.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- -
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000039.1:862796-876572[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.18 14 6.7 0.6 1 21 23 43 23 44 0.93 2 29 0.00011 0.0085 16.8 3.8 2 23 60 82 59 82 0.95 3 29 0.0014 0.11 13.3 0.2 2 23 91 113 90 113 0.95 4 29 0.032 2.5 9.1 0.3 1 23 120 143 120 143 0.93 5 29 0.95 74 4.4 0.4 3 23 151 172 149 172 0.92 6 29 0.0059 0.46 11.4 0.0 2 21 180 201 179 202 0.93 7 29 0.0035 0.28 12.1 1.3 6 23 205 222 205 222 0.98 8 29 5e-05 0.0039 17.9 1.0 1 23 229 251 229 251 0.99 9 29 0.03 2.3 9.1 0.1 1 23 257 279 257 279 0.92 10 29 1.1 89 4.2 1.3 1 11 285 295 285 297 0.88 11 29 1.8 1.4e+02 3.6 0.3 1 20 296 315 296 317 0.91 12 29 0.00047 0.037 14.8 0.3 2 23 333 355 333 355 0.96 13 29 4.6e-05 0.0036 18.0 0.1 2 23 364 386 363 386 0.96 14 29 0.062 4.8 8.2 0.2 1 23 393 416 393 416 0.92 15 29 0.0026 0.2 12.5 0.4 1 23 422 445 422 445 0.97 16 29 0.00052 0.041 14.7 0.1 2 23 453 477 452 477 0.93 17 29 0.00026 0.02 15.6 0.8 3 23 486 506 484 506 0.91 18 29 0.14 11 7.1 4.4 1 23 513 535 513 535 0.98 19 29 0.00039 0.031 15.1 0.1 1 23 541 564 541 564 0.94 20 29 5.6 4.4e+02 2.0 0.5 1 9 570 578 570 578 0.88 21 29 0.24 19 6.3 0.6 1 20 588 607 588 609 0.93 22 29 0.0022 0.17 12.7 5.9 1 23 624 647 624 647 0.96 23 29 0.00071 0.055 14.3 0.1 2 23 656 678 655 678 0.94 24 29 0.017 1.3 9.9 0.7 1 23 685 708 685 708 0.96 25 29 0.081 6.4 7.8 0.4 1 23 714 737 714 737 0.96 26 29 0.017 1.4 9.9 0.1 3 23 746 769 744 769 0.88 27 29 0.00016 0.012 16.3 0.9 2 23 777 798 776 798 0.96 28 29 0.00036 0.028 15.2 2.2 1 23 805 827 805 827 0.97 29 29 2.6e-06 0.0002 21.9 2.4 1 23 833 855 833 855 0.98
Sequence Information
- Coding Sequence
- atgttaaaccGTTGTAATGTAACACTGGTGTTTTTTAGGAAATTGGAATATGATACTTCGATTAGCTATCACTGTACGTCATGCAACTTTGCCTTCGAAACGTACGCTCTGCTTTTGGATCACGAAAAGCAATGCGTTGTCGTTCCCCCCGGCATAGATGATGTCAAACCTTTTCTTACTTGCCCGGAATGTCACAAAACGTACGCTACTAAGCGTAAACTAACCAATCACCTAAACCACGTCCACAAACGTAAAGTATCACGCAGGTTATATTGTCCAGAATGTCCTAAGACATTCATGAAGTTggacattttaaataatcacatcAATAAGGTTCATCTAGGGGTCGCGGTATACCATGAGTGTGATATTTGCGGCGCAAAATTGTCAACTAGGATGAATATGATATATCATAAACAAGCCGTTCACttgaaaaagttcaatgtaCATTGTGAGCTTTGCGGGAAGGGTTATCTGTTTAAAGGTGGCCTGGGTGCCCACAAGAAACGGGTACACGATCGCGAGGTTACTATAATATCTTGTCCCGTGGAAGGTTGTGTAAAAGTGTTCAAAACTAAACCTGCTTTGAAATATCATATTCAAGCCGTTCCATGCGGTAAAGTGTTCACACATCCGTTTCTCTATAAGAAACATTTGTATAGGCAcgaaaatggccaaaaatcgtATTATTGTTATGTCTGTGAGAAAACGCTCAGCTCATCGGGAAGTTACAAAATTCATATACGAACTCATACAGGAGAGAAACCGTTTGTTTGCGACGTTTGTGAAAGGGGGTTCAATTCGACGCAACGCCTGAAAGAGCATGGAGTGGTACATTCGAAAGAACGTTCACACGTTTGTACTATATGTGAAAAAAAGTTTGCCTATCATTGTACGTCCTGCAACTTTGCCTTCGAAATCTACGCTCAACTTTTGGATCATGAAAATCAATGCACTGTTGTTCCTCCTAGCAGAGATGATATTAAGTCCTTGCCGTCTTGCCCGGAATGTCTCAGAACGTACGCTAGTAAGAATTCACTCTCTAATCACATCAACCGTGTCCACAAACATAAGGAATCCTGTTGGATATATTGTCCAGAATGTCCTAAAATATTCAAGAAGGTGGAGACTTTAAATACTCACATCAACAAGGTCCATCGAGGAATCGAGAAACATCATGATTGCGATATTTGTGGTGCGAAACTGACAACTAAGATTGGTTTGATATACCATAAAAATGCCCTTCACCTTAAAAAGTTCAATTTTCATTGTGAGTTGTGTGGGAAAGGGTATATGCTAAAGGGCCTCTTGGATGCGCATTTGAGACGGATACACGATCACGAGTCTGCCATAATATCCTGCCCCGTGGATGGTTGCGTAAAAGTATTCAAAACTAAACCTGCTTTTAAACGTCACATTCAAGCCGTTCATGCGGAAGATCGTCCAAATTTAGTCTGCGTTCCATGTGGTCAAGCATTCACACATTCAAGTCTCTATGAGAAACATTTGCGAAAACACGAAAATGACCAATCGCTGTATTTCTGTTATATATGTGAGAAAACCCTAAGCTGTTCGGGAACTTACAAGACTCACTTACGAACTCATACAGGAGAGAAACCGTTTGTTTGCAAAGTTTGTGGAAGAGGTTTCATTTCAATGCGAAGCCTAAAAGAACATGAGATAGTGGTGCACACGGAAGAACTTTCACATGTTTGTACTGTATGTGGAAAAAGGAAGCTGGAGTTTGATATTTCGACTAACTACCACTGTACGTCTTGTAACTTTGCTTTCGAAACATACGCTCTTCTTTTGGATCACGAAAGTAAATGTGTGTTCGCTTCTACCAACGGAGGTGGTACCAAGCCTTTGCACTCGTGCCCACAATGTCACAAAACGTTCTTTTATAAGCGATATGTAACTAATCACATCAACCGTGTCCACAAACGTGATTTGTCATTGAAGGTGTCATGCCCAGAATGTCCTAGGACGTTCAGTAGggcgaatattttaaatagtcaCATCGACAGAGTTCATCGGGGAATCATGGAATCGTACGAGTGCGATATCTGCGGTGTGAAACTGACAACTAAGCTGGGTATGAAGGAGCATAAGAGGCACGCTCACCTGAAAAACTTTGATTTCTATTGTGCGTTATGCGGGAAGGGGTTTTTGTATAAAGCCCGCTTGGATGTCCATAAGAGACGTGTACACGAAGGCGAAGTTACTATATTACCATGTTCCATGGAAGGTTGCTTAAAGACCTTCACAAGTAAATATTCATTGGATTATCATATTTATGCCGTTCATGCGAAAGATCGTCCGGAATTAGTCTGCGTTCAATGTGATAAGGTGTTCACACATCCGTTGGCCTATAAGACACATCTGCGTTATCACAAAAACGGTCGACCACCGCATTCCTGCCATATATGTGGGAAGACGCTCGGCTCGACAGCAAGTTTTAGAATTCACTTACGAATTCATACAGGAGAGAAACCGTTCGTTTGCGACGTTTGTGGAAAACGCTTCAAAACAAAGCAACACGTGAAGAGTCATGTAAGGGTACATATGAAAGCACATTCGCACGTTTGTACACTCTGCCATGAGGTACCCTGCACTAGGAAATGTACAAGCAACATCAATCCAGTCAGATCAACAGGTCATACCAAGTTCCTAGTAGAACTATCCGTTCACAAACACCGGTCAAGTAACTTAGACTATGAAATGAGTTACCAATACTCGGTCATCACGTGTGAGTCTGGTACCTGGTCACGAAGTCACCTAGCATGA
- Protein Sequence
- MLNRCNVTLVFFRKLEYDTSISYHCTSCNFAFETYALLLDHEKQCVVVPPGIDDVKPFLTCPECHKTYATKRKLTNHLNHVHKRKVSRRLYCPECPKTFMKLDILNNHINKVHLGVAVYHECDICGAKLSTRMNMIYHKQAVHLKKFNVHCELCGKGYLFKGGLGAHKKRVHDREVTIISCPVEGCVKVFKTKPALKYHIQAVPCGKVFTHPFLYKKHLYRHENGQKSYYCYVCEKTLSSSGSYKIHIRTHTGEKPFVCDVCERGFNSTQRLKEHGVVHSKERSHVCTICEKKFAYHCTSCNFAFEIYAQLLDHENQCTVVPPSRDDIKSLPSCPECLRTYASKNSLSNHINRVHKHKESCWIYCPECPKIFKKVETLNTHINKVHRGIEKHHDCDICGAKLTTKIGLIYHKNALHLKKFNFHCELCGKGYMLKGLLDAHLRRIHDHESAIISCPVDGCVKVFKTKPAFKRHIQAVHAEDRPNLVCVPCGQAFTHSSLYEKHLRKHENDQSLYFCYICEKTLSCSGTYKTHLRTHTGEKPFVCKVCGRGFISMRSLKEHEIVVHTEELSHVCTVCGKRKLEFDISTNYHCTSCNFAFETYALLLDHESKCVFASTNGGGTKPLHSCPQCHKTFFYKRYVTNHINRVHKRDLSLKVSCPECPRTFSRANILNSHIDRVHRGIMESYECDICGVKLTTKLGMKEHKRHAHLKNFDFYCALCGKGFLYKARLDVHKRRVHEGEVTILPCSMEGCLKTFTSKYSLDYHIYAVHAKDRPELVCVQCDKVFTHPLAYKTHLRYHKNGRPPHSCHICGKTLGSTASFRIHLRIHTGEKPFVCDVCGKRFKTKQHVKSHVRVHMKAHSHVCTLCHEVPCTRKCTSNINPVRSTGHTKFLVELSVHKHRSSNLDYEMSYQYSVITCESGTWSRSHLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -