Rfer021974.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhynchophorus ferrugineus
Gene Symbol
-
Assembly
GCA_014462685.1
Location
JAACXV010000039.1:954916-967490[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 8.3 6.5e+02 1.5 0.2 1 9 70 78 70 92 0.81
2 26 0.011 0.84 10.6 3.2 1 23 96 118 96 118 0.98
3 26 0.0039 0.3 11.9 3.6 1 23 153 176 153 177 0.94
4 26 0.00011 0.0088 16.8 2.9 1 23 186 209 186 209 0.96
5 26 0.0018 0.14 13.0 1.1 3 23 217 237 216 237 0.98
6 26 5e-05 0.0039 17.9 2.8 1 23 243 265 243 265 0.97
7 26 3e-05 0.0023 18.6 1.0 1 23 271 293 271 293 0.98
8 26 8.3 6.5e+02 1.5 1.6 1 21 299 319 299 320 0.85
9 26 0.01 0.79 10.6 0.2 2 23 427 448 426 448 0.89
10 26 0.41 32 5.6 1.8 1 23 454 476 454 476 0.97
11 26 0.011 0.89 10.5 1.6 1 23 482 504 482 504 0.88
12 26 0.00029 0.022 15.5 3.4 1 23 510 533 510 533 0.98
13 26 0.00012 0.0094 16.7 3.1 1 23 545 568 545 568 0.93
14 26 1.4e-05 0.0011 19.7 0.6 3 23 579 599 578 599 0.99
15 26 3.3e-07 2.6e-05 24.8 0.6 1 23 605 627 605 627 0.98
16 26 2.9e-06 0.00023 21.8 0.3 1 23 633 655 633 655 0.98
17 26 2.8 2.2e+02 3.0 0.5 1 14 661 674 661 675 0.89
18 26 0.0042 0.33 11.8 0.1 2 23 792 813 791 813 0.91
19 26 0.45 35 5.4 1.8 1 23 819 841 819 841 0.97
20 26 0.018 1.4 9.8 1.5 1 23 847 869 847 869 0.90
21 26 0.0001 0.0078 16.9 3.8 1 23 875 898 875 898 0.98
22 26 0.00012 0.0094 16.7 3.1 1 23 910 933 910 933 0.93
23 26 1.4e-05 0.0011 19.7 0.6 3 23 943 963 942 963 0.99
24 26 1.5e-06 0.00012 22.6 0.5 1 23 969 991 969 991 0.98
25 26 2.8e-06 0.00022 21.8 0.3 1 23 997 1019 997 1019 0.98
26 26 0.038 3 8.8 0.1 1 22 1025 1046 1025 1046 0.96

Sequence Information

Coding Sequence
ATGTTGGAATGTCTGGAAGCAGTTGATACAACAACTGATAAATCTTCTACAATATACTTCTTACGTTTTCAGCAAGAGATTTTTGTaaagaaacaacaaaaatttgtacaaataaaaattgaaccaCCCGATCAGTTCGAACAGAAATCGGGAGATCATTTCCAAAAGGCGTCTCAGGTTCGTTCGCAGGAAGATCACAAGATCCGATTCACGTGTGAAGTGTGCGATTACACGGCATTGCACAGTTTGGATTTTGCTCTGCATTCGATCAACCACACCGAGAGGTTCTATTGTCAGTATTGTTCGTACAAGACCGGCAAAGAGAAGAACATGGAGAAACATATGAAGAGTCATTCATCGTCGAAATACGCCCGATATTGTACGGTGTGTTGCAAGAGGTTTCCGGAAGACGTACAGGCGGATGAACACAAGAACTTCCATTCAGGAGCGATGCCCTTTAACTGTACGATGTGTGGGAAGAATTTCATGTTTTCCTGGCTGTTAAACACACACAAAAGatttttacaTCATGGTGTGGTAAAAGAGGATGATCACTATTCATGTTTACTATGTAAGCTGACCTTCAGCACCAAATCAGGCTTGCAAAAGCACCAGTTTCGCAAGCACGAGCCGAAAGTACAATCTCTCTGCGATATATGCGGCAAGAGCCTGTCAAGCAGCGAGACGCTAAAATTTCATAAACGCACCCATACAGGATACAAACCACATGTTTGCAGTACCTGCGGCAAGAGTTTTTGTAAGAAGGGACTCTTGGTGGAACACGAAAGGGTGCACACGGGGGAACGACCGTTTGTTTGTGTTTTTTGTAAGAAGGGATTCAGCCAGAGAGGCACCCTGAAAATCCACACAAGAATCCATACAGGCGAAAAACCCTTTATTTGTCGTTTGTGCGGCAAAGGATGTATATGCAAAAGCGTCCTGGACGTTCATATCAAatatttggACCAATCTGTTTCAAATAACTTAACTTATGAGATCAAAGAACAAATAGGCGAAGTTCCAAATGACATTTACCACAAGGAACAATATAGCAACGATTTTAATAGTCAAGTATTAGAACCGgagataaaaattgataaaccaccagatgatataaaaattgatgtagGTATTGTTGAAGGTTCTCCGAAAGGAGATGTAATTGttactaaaaataaagtaaaacgtTCGACGAAGAAGAAGGGAAGGAGAAAGATGACAAGGAGCAATAAGAGTCAGAAGAAGAATTCTCCGCCTGTCGAACTCGATGAGCCCATAGAGTGTGAAATGTGcaataaaacttataaaaataacGTTGCATTTGTGCTGCATTCGATTGATCATAGTGAGGATACAAAATATTCTTGCCATTTGTGTGATTATAAAAATACCTCCAAGTATCTCATTGAGATGCATGTTCGAGCCCACGAGGGCACTACTAAATTTAAATGCGATATTTGCAACAAGGCTTTTACTCTCAGTGCTCATGCCGTCGAGCACAAATATTTCCACACGGGCGAAAAGCCCTTTCAATGTGATATCTGCGGAAAGCATTTTATGTTCTCTTGGTTTCTGTCCAGTCACAGACGAACACAACACTGGGAAATTGTAACTGGTAGTCCTTTAGTAAAATATGATTGTACCATCTGTAACAAGCATTATACATCTTCTTCAGGTCTAAAACGTCATAATATGAACTATCATGGACCACCAGACGTGGATCGGTCCGTGCTTTGCGATATATGCGGCAAGAGTCTCTCATCGAAAGACAAACTCAAAATCCATCGTCGCATTCACACCGGTTACAAACCGTTCACTTGTGAAATATGCACGAAGAGTTTCTCCCGCAAAGAACAGCTGATAGTACACGAAAGGGTCCACACCGGCGAGAAACCGTACATCTGCAAATATTGCGGCAAAGCTTTTACTCAGAGATCACCACTAGGGATCCACGAACGTACCCATACGGGCGACAAACCGTATAAATGCAGAATATGCGAGAGGGGGTATTTCGACCAGTCTGGACCTGAAATTTCTGTACCGTCAATCAAACaggaaaattatgaattttcaGCTGAAAATTATCACCAAGATCAATACAACGATGATAATCCTAACGGTTTCAATAGTTCTATGATCAGTAAAGTATTGGAAACTGAGATAAAAATTGAGGAACCATTAGACGGAACTAGtgataatatgaaaattgaaGCTAACCCTATTCAGAGTGTTGTCAAACGAGATTCGAACGTCTTtgcgaataaaataaaacaggaaCCTAGCACAACTAAAAAAAGGGTGAAGAGAAAGGTGACAAGGAACAATAAGGGTCCGAAGAAACATCCACCACCTGTCGAGCTCGATGAGCCCATTGAATGTGAAATTTGCAATAAGACTTATAAGAATAATGTGGCTTTTGTGTTGCATTCGATTGAACATAGCGAGGAGAATAAATATTCTTGTCATTTGTGTGAATACAAAAATACTTCGAAGTACCTTATTGAAATGCATATTCGAGCCCACGAAGGTACTACCAAATTTAAATGTGATATCTGCAGCAAAGCGTTCACCCTTAGCGCTCATGCCATCGAGCATAAATATTTCCATACAGGCGAAAAACCGTTTCAATGTGATATATGTGGAAAACATTTTATGTTCTCTTGGTTTTTGAATAACCATAGACGTACGAGGCATTGGGAAATTGTAACCGGCAGCCCTTTAGTGAAATATGATTGTACTATCTGCAACAAGCATTATACATCTTCTTCAGGTCTAAAACGTCATAATATGAACTATCATGGACCAATTGTGGACCATTCGGTGCTCTGTGATATTTGCGGAAAGAGTCTCTCATCGAAAGACAAACTGAAGATCCATCGACGTATTCACACCGGTTACAAACCGTTCACTTGTGAAATTTGCTCGAAGAGTTTCTCCCGCAAAGAACAACTGATAGGGCATGAAAGGGTCCACACCGGCGAGAAACCCTACATTTGCAAATACTGCGGCAAGGCTTTTAGTCAGAGATCGCCGCTGGGGATCCACGAACGCACACATACAGGCGAACGACCGTATAAATGCATAATATGCCAGAGAGGATTCGTTTCGAAAGGTGCTATGGATACGCATATGAAAACATGTAACAAATAA
Protein Sequence
MLECLEAVDTTTDKSSTIYFLRFQQEIFVKKQQKFVQIKIEPPDQFEQKSGDHFQKASQVRSQEDHKIRFTCEVCDYTALHSLDFALHSINHTERFYCQYCSYKTGKEKNMEKHMKSHSSSKYARYCTVCCKRFPEDVQADEHKNFHSGAMPFNCTMCGKNFMFSWLLNTHKRFLHHGVVKEDDHYSCLLCKLTFSTKSGLQKHQFRKHEPKVQSLCDICGKSLSSSETLKFHKRTHTGYKPHVCSTCGKSFCKKGLLVEHERVHTGERPFVCVFCKKGFSQRGTLKIHTRIHTGEKPFICRLCGKGCICKSVLDVHIKYLDQSVSNNLTYEIKEQIGEVPNDIYHKEQYSNDFNSQVLEPEIKIDKPPDDIKIDVGIVEGSPKGDVIVTKNKVKRSTKKKGRRKMTRSNKSQKKNSPPVELDEPIECEMCNKTYKNNVAFVLHSIDHSEDTKYSCHLCDYKNTSKYLIEMHVRAHEGTTKFKCDICNKAFTLSAHAVEHKYFHTGEKPFQCDICGKHFMFSWFLSSHRRTQHWEIVTGSPLVKYDCTICNKHYTSSSGLKRHNMNYHGPPDVDRSVLCDICGKSLSSKDKLKIHRRIHTGYKPFTCEICTKSFSRKEQLIVHERVHTGEKPYICKYCGKAFTQRSPLGIHERTHTGDKPYKCRICERGYFDQSGPEISVPSIKQENYEFSAENYHQDQYNDDNPNGFNSSMISKVLETEIKIEEPLDGTSDNMKIEANPIQSVVKRDSNVFANKIKQEPSTTKKRVKRKVTRNNKGPKKHPPPVELDEPIECEICNKTYKNNVAFVLHSIEHSEENKYSCHLCEYKNTSKYLIEMHIRAHEGTTKFKCDICSKAFTLSAHAIEHKYFHTGEKPFQCDICGKHFMFSWFLNNHRRTRHWEIVTGSPLVKYDCTICNKHYTSSSGLKRHNMNYHGPIVDHSVLCDICGKSLSSKDKLKIHRRIHTGYKPFTCEICSKSFSRKEQLIGHERVHTGEKPYICKYCGKAFSQRSPLGIHERTHTGERPYKCIICQRGFVSKGAMDTHMKTCNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-