Rfer021975.1
Basic Information
- Insect
- Rhynchophorus ferrugineus
- Gene Symbol
- -
- Assembly
- GCA_014462685.1
- Location
- JAACXV010000039.1:927455-935663[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00099 0.078 13.8 0.4 2 23 59 80 58 80 0.96 2 20 3.6e-06 0.00028 21.5 0.3 1 23 83 105 83 105 0.98 3 20 0.00012 0.0096 16.7 1.7 2 23 112 134 111 134 0.96 4 20 0.0058 0.46 11.4 3.2 2 23 141 162 140 162 0.97 5 20 5.7e-06 0.00045 20.8 0.9 2 23 170 192 169 192 0.95 6 20 5.8e-05 0.0045 17.7 0.2 1 23 197 219 197 219 0.96 7 20 0.016 1.3 10.0 0.7 2 16 230 241 229 249 0.74 8 20 0.0004 0.031 15.1 3.4 1 23 256 278 256 278 0.97 9 20 4e-05 0.0032 18.2 2.9 1 23 284 306 284 306 0.99 10 20 0.022 1.7 9.6 3.2 1 16 314 329 314 330 0.92 11 20 0.00026 0.02 15.6 3.4 2 20 414 432 413 435 0.94 12 20 1.2e-05 0.00092 19.9 0.8 2 23 442 464 441 464 0.95 13 20 4.2e-06 0.00033 21.3 1.8 1 23 470 492 470 492 0.98 14 20 0.00048 0.038 14.8 1.9 3 23 500 521 499 521 0.96 15 20 1.6e-05 0.0013 19.4 0.3 1 23 526 548 526 548 0.98 16 20 0.65 51 5.0 4.9 2 23 559 578 558 578 0.90 17 20 3.2e-06 0.00025 21.6 0.1 1 23 585 607 585 607 0.98 18 20 5.7e-05 0.0045 17.7 5.1 1 23 613 635 613 635 0.98 19 20 1.1e-06 9e-05 23.0 0.1 1 23 641 663 641 663 0.99 20 20 0.59 47 5.1 0.8 1 23 669 692 669 692 0.96
Sequence Information
- Coding Sequence
- atgaataaaaaaaaattgacgagTGCTTGTGCTTGgctagtagaaaataaatgccatctaaagGAAATAATCACCATAGTGATAAGACCAGAATTAAATGAGAAATCCGAGGACGTCAACATTTCAAAAGAACTTTCGTTTCAAAGAGGGTCTTCTATCGACGACACTGAAACGTCGTGTGACGTATgtggaaaattattttccagTGAAATTCAGTATTTCGTACACCTGAAACAACACAAGAAATTTACTTGCGATGTTTGTGGTAAGATTTTTGCTAGTAATACCGTTTTAAAACGACACCAGATTTCTCATCGCGAAGACAGACCACTGATGTGTCCGCTTTGCCCTAAAACCTTTAAGCATCGGAGAGTTTTGGACTACCACATGAAAACTTTACACCAACCTTCTTCAAAAGTGTATTGCGATTTATGTGGAAAGGAATTCACCACAATAAAGAATTGCCTCAGACATAAAAAAACGCATTTTATTGAAGACGAAACGTTAACCTGTCGCGAATGTAATAAAGTGTTTGCCAATAACTGGTACCtgaagaaacatatggattcgAGGCACTACGGCAAAGTACATATCTGCGATATATGCGGTGCTAGAATCGCCGACAAAGGAAATCTGAAGAATCATATGAAGCTTCATGATCCTAATTACAAAAAACCCGAACCTCAAACGTGTCCGATATGCAACAAGACCTTCTCCAACATCAAGGCTCACCATAAAGCCGCCCACGAAAATGACGGGAAGAACTTTAGTTGCGAGTATTGCGGTAAATTCTTCCAGCACAAGTCAGGACTAAAGTTTCATTTAATGGTACATAAAGAAGACAAACCGTTTAAGTGCAATTTCTGCGAGAAGAGCTTCATCTTGAACACATTCTTGCAGCAACATCTTCGAACTCATCCGGAAAGCGATGTAAAACCTTTTCAGTGCTGCTATTGTGATAAAACCTTCATTAAAAGAAGCAATGTTAgagGCTTTGTAAGTAAATGTAAAATACGTCGACCGAAAGCTAAAGGTACTCAATATATTAATGGGGTTTGCCCGGCCAGAATATTTGCAAAAGTTCAAGTAACtgGTGCGGTGTCAGTTGAGTATGTTGAGACTCACGTGGGACACGAAGATGATGTACACTTCAAGAGGAATGACATATCTCTGGTGCCAAAACAAGAATCGAAATCCGTTAGATACACGTGTGCAAGCAACAAAGATGAACGACTTGTAAAATGTCCTCAGTGTCCCCGAACTTTTCGTCAAAATTATAAGCTTAAAAGTCACCTGACCTGTCATCAGATGGATAAATCGCTGACTTGTTCTGTTTGCCAGAAGCAATTCAAGAAAATATCGGCTTTGAACCGGCATATGAGAGATATCCATGAAGGCACCCATAAGTTTAATTGTGAGGAATGCGGACGTGTGTTTAATAACAAGAACAACTACAACGTTCACAAAAAGAGACATTTTCAGGAATATGTTGAGCATTGTGACTACTGTAATGTGGGTTTTGTGACGAAAGCAGAATATCGAAGACATTTACAAAGGAAACACGCTGGTAAGAAATTCGTCTGTGATACTTGCGGGAGGAGTGTGTCCAGTGAGCGTCAGTTGAGAGAACACCAGAAAATCCACGAGGAGAACTACGAGGATACGTACTTCAAAGAATGCGGAGTGTGCAAGAAAAAGTTTCGACACCTCAAGAAACATCTACGAGAGTTTCACGAGGGTAACGGAAAAAATTACATCTGCGACCTGTGCGGGAAAGAGTTCAGGGGCCAAAGCGGGTTAAAAGTGCACCTGATGATTCACCGAGGCGACAAACCTCATCAATGCAGTTTATGCCAAAAAAAGTTCTATTCCAGGCAGTATCTCACTATACACTTACGCACCCATAGTGGCGAGAAACCCTTTAAATGTGAAGTGTGTGGGAAAGGTTTCGCTCAAACACCACCCCTGAAAGTCCACATGAGGACACACTCTGGCGAAAGACCGTACAAGTGCGATCTATGCAGCCTTAACTTAATCTCACGACAGTTGCTGAATTTTCACAGAAGAAGTGTTCATAAAATtgtcgataaaatataa
- Protein Sequence
- MNKKKLTSACAWLVENKCHLKEIITIVIRPELNEKSEDVNISKELSFQRGSSIDDTETSCDVCGKLFSSEIQYFVHLKQHKKFTCDVCGKIFASNTVLKRHQISHREDRPLMCPLCPKTFKHRRVLDYHMKTLHQPSSKVYCDLCGKEFTTIKNCLRHKKTHFIEDETLTCRECNKVFANNWYLKKHMDSRHYGKVHICDICGARIADKGNLKNHMKLHDPNYKKPEPQTCPICNKTFSNIKAHHKAAHENDGKNFSCEYCGKFFQHKSGLKFHLMVHKEDKPFKCNFCEKSFILNTFLQQHLRTHPESDVKPFQCCYCDKTFIKRSNVRGFVSKCKIRRPKAKGTQYINGVCPARIFAKVQVTGAVSVEYVETHVGHEDDVHFKRNDISLVPKQESKSVRYTCASNKDERLVKCPQCPRTFRQNYKLKSHLTCHQMDKSLTCSVCQKQFKKISALNRHMRDIHEGTHKFNCEECGRVFNNKNNYNVHKKRHFQEYVEHCDYCNVGFVTKAEYRRHLQRKHAGKKFVCDTCGRSVSSERQLREHQKIHEENYEDTYFKECGVCKKKFRHLKKHLREFHEGNGKNYICDLCGKEFRGQSGLKVHLMIHRGDKPHQCSLCQKKFYSRQYLTIHLRTHSGEKPFKCEVCGKGFAQTPPLKVHMRTHSGERPYKCDLCSLNLISRQLLNFHRRSVHKIVDKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -