Rfer004334.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Rhynchophorus ferrugineus
Gene Symbol
ZNF236
Assembly
GCA_014462685.1
Location
JAACXV010014079.1:19155-29742[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 24 0.033 2.6 9.0 1.8 1 23 104 126 104 126 0.95
2 24 0.45 35 5.4 0.6 1 23 132 154 132 155 0.92
3 24 2.8e-05 0.0022 18.7 0.2 3 23 162 182 161 182 0.97
4 24 0.00071 0.056 14.3 0.0 1 23 188 210 188 210 0.97
5 24 0.56 44 5.1 0.9 2 23 224 245 223 245 0.90
6 24 0.00028 0.022 15.5 4.0 1 23 270 292 270 292 0.98
7 24 1.6e-05 0.0012 19.5 0.1 1 23 298 320 298 320 0.97
8 24 3e-05 0.0023 18.6 0.6 1 23 326 349 326 349 0.97
9 24 0.013 1 10.3 1.7 1 23 359 382 359 382 0.95
10 24 9.2e-06 0.00072 20.2 2.3 1 23 454 476 454 476 0.98
11 24 2e-05 0.0015 19.2 2.5 1 23 482 504 482 504 0.99
12 24 0.067 5.3 8.0 0.2 1 23 524 546 524 546 0.94
13 24 5.1e-06 0.0004 21.0 2.3 1 23 577 599 577 599 0.98
14 24 0.0002 0.015 16.0 3.3 1 23 605 627 605 627 0.97
15 24 1.6e-07 1.3e-05 25.7 0.8 1 23 633 655 633 655 0.98
16 24 0.0076 0.59 11.0 4.6 1 23 661 684 661 684 0.96
17 24 2.6 2e+02 3.1 1.3 3 19 846 862 845 865 0.82
18 24 8.4e-06 0.00066 20.3 2.4 2 23 913 934 913 934 0.97
19 24 3e-05 0.0024 18.6 3.9 1 23 940 962 940 962 0.98
20 24 1.7e-05 0.0013 19.4 0.3 2 23 970 991 969 991 0.96
21 24 0.74 58 4.8 1.2 1 23 997 1020 997 1020 0.78
22 24 0.0001 0.0081 16.9 1.1 2 23 1111 1133 1110 1133 0.96
23 24 0.006 0.47 11.3 0.9 1 23 1138 1161 1138 1161 0.93
24 24 0.00053 0.042 14.7 2.5 1 23 1167 1190 1167 1190 0.98

Sequence Information

Coding Sequence
ATGATTGCTTCGAGTGTGTTGGAAAGTCGGAACGTTTCCTTCGAAAATTACGAGGTTTTGGAAAACACGAACGTTTTACCCATGGAAGTTGATTTAAATAATGACGGGAACTCGATGTTGCTACAGAACTATATAATTCATCAGCTGGACGACGGAAATTATCAACTGGTGCTTTGCGAATCACAGAACGGCCAACAATCTAACGAACACCAACTAAAGAATGACGAAACACCGACACAACAGCTCCAAACGATTAGCTCTTATCGAACAACTTGTATCGAAATGGAGAAACCTCTTAGTCCGAACACATACTCCTGTATAAAGTGTAAGGaacagtttaataatatttcgctGTTTCGTAAACACTTGAAGTGGCACAAGGCGGAAAAGAAATTTAACTGTACCAAGTGCGCTGTGGGTTTTAACGCTGAGAATAACCTAAAGGTCCACTCGATTCTGCATCATCCCGGTCACACCAACATCTGCCCGATTTGTAACATCAAGTTCCAGAGGAAGGCCAGCTTGAAGTCTCACATGATCGTGCACCAGGTCGAGGAGGTTTTCGCGTGTGAAGAATGCCAGGCGGAGTTTCAAAATGAGGATGAATTGTTGAAACATATGGAAATACATGCGGTTACGAGGGTTTTGAGGAACCCGTCGGATGCGTTAGTGTGTCCGTACTGTAAACTGGATTTCTCTGATATGGAGAAGCACAAGCAACATGTTGCTCGGCATGTGGAGGtcaaaaagaatattttgaaggggaaaaagtCGAGGAAACGTAAAGGCAGGTCGAGGGTCACCAGCCATAAGTGTAAATATTGCGGGAAGATGTTCCCTAAGGGTTGTCTATTGGAAAGGCATGAGAGAATTCATACTGGAGAGAAACCTTATGTCTGTAATGTGTGCAATAAGTCTTTTGCCCAAAACGGTACTTTGCTTATACACTTGGGCAGTCATACCGGGGTAAAACCCTATTCTTGTACATTGTGCCCGGCCAAGTTCACCCAAAAAGGTAATTTCAGGGCTCACATTGAGAAGACTCACACCGCACCCAAAGGCAACCAGAAAATGTACAAATGCAACCAATGCGACTGTATCTTCAAGAAGGTCGCTACGCTCAACGGTCACGTCACCAAGGTTCACCTGAACAAAGGGGGACAGGAGAACGTCATCGATCGAGTAACGGACGACCTGAAGATGCTCAACAACGCCATGACCAAAATCAAGAAGAAAGTGCCTCTGAGTCCCGTCCAGAACATCCCCGGTGATAGCTGGGTTCATCTCGCCGAGAGCGAAGTGGACGACGGCGTCAGGAGGTACCTGGTAAGGCAGAGGAAGGTGGGCGACGTCCGATGGTACTTCTGCAATTACTGCTCTAGTCGTTTCAAGAAACCCTCGGATCTGATTCGGCATTTACGGACCCACACTCGGGAAAAACCTTTCAAGTGCACCGAATGCAACCAGGCCTTCTCGCTGAAATCCACCTTAATGAACCACAAGAAGACCCACAATAACCGTGACACGAATGAACAAATCAAGCCACATGATGAGAAAAACTATATTAGTTACATGTGTGTGTTGTGCGACAAGGTTTTTGGGTCATTGGACGAGAGCCAACAGCATAAGAGCGTTCACCAACATGAAATCAAAAGTACTGAGAATATCATAGAAGCATTCATTCAAGAAACCGTCCACGATCGAATGTTTTGTCCAACAGAAAATCCGTACCAATGCAAAACGTGTAACGCACGCTTTTCTCGACTCATCAATTTGAAAAAACACATGATGTACCACACCGGAGAGAAAAAACACAAATGCCCACTGTGCACCAAGACATTTATAACGAAGTACCGGCTGACGGAACACGTGaattatcacaaaaatatcAGAAACTATTCCTGTCAAGTATGCGGCAAGAATTTCGTCACATCTTCGATGCTGAAGCGTCACATGACGGTTCACAACACCCTCAAACTATACTGTTGTCAATATTGCAAGGGAACTTTTAAAACGACATTGTCACTTCGCGCCCATATTAGGTACTTTCACAACTCCGACGAATCACAGAACGATGAGGTCGAGAAATCCACGGGGAGTCGCCCGGAAACATCACAAGAAATGGTTGCTACGACCGAGGTCGGTGAGCCGATGACAGCCGATCCGGTGGTTCTGACGGTCACGAACGGAGAGCAAGGCCAGCTGGATTTGAATCCAGATTATCCGTTGGTTTACGTGAGTATCAACCCATTGCTCAACGAATCGGCGGTAAATAACAATGCCTTGCCGAGCGACACATTGCTCTTCGACTCGGCGACTCAGGAGGCTTCGGTCTTGTTCGACGTGGGACCGGTCAAGGAGCAGCCCGCCATGGTGGATCCGAACGTCGTCATCAATAGCGTCGGCTACGAGCAGCACAAAGAGGTCGCCGAGCCTCTGAGTGACGTGGAGATGTGCCTGAACAGTGTGCCAATAAATATCATAGCCGAGGACGACGGAAAAGCCGGCGTGGATCTGTTGAACGCTCAGGTCTTCTGCGTCAACTGTCACAAGATGTTCTCGGACATGGCGGTGTTTCAAGGACACGCTTGCTCCGCGCCGTCCATCACTCAGGCACCGGCTGTCACCGAAATTGCGGCCGCCGCCGTATCGGACCAGCCGGAAACGATCAAGTACGACCTCGGACCGTACATGCCGCTGCACAAACAGGACGAGGTGCTTTTGGCTACCGACAATGTGTGTAAATATTGCTTCAAGGACTTCAAGAAGCGGTCCGATTTGGTGAGGCATCTACGCACCCACACCGGGGAAAGACCGTTCGAATGCTCCCAGTGCAAGAAGAAGTTCACCCTGAAATCAACGCTGGAGTCCCACAAGAGGACCCATGACGGCTCGCAGAAGAACGTCTCCTGCGACGTGTGCAACGCCAACTTCACCACCAAATCTAGCCTCAAGGTGCACATGCTCTTGCATACAGGAGCCAGACCGCACGCTTGCAATTTCTGCGAACAGACGTTCCGAACGTCGGCCATCCGGAAGGCCCACGAGAAAAACATCCACCTGAACAGCACCCGTCCGCCCAGCTCCCCGAAGGGCGTCAAGCTGCTGAAGAATGTAGCGGACGAGGTCGCGAACAGCCTCCGCCAGCAGGAGACGGTCACCGCCACCGAACCGGCGATGTTGCCGTTGGATTTTCTGCTGCAGATCCAGAATGGCGGCATCAACCTGCTCGAGTACGCCGAGGACGGACAAGGTCCCGAGTTGGGAGGGGTATTGGGCGACCCCAGTCCCGTGGCGGATCAAGCTACGGCCTCCAGGCCGCCGAAGGTGCAGTGCGACGtctgcaacaagatgtactcgTCCAAGGACGTGCTTCGGAAACACAAGAAGAAAATCCACGGGTCCAACAAGTTCCCCTGCATAAAATGCGATAAAAGTTATGGCGATTTCAAGGAACTGAACAACCACCTGAAGAAGAACCACACGGGTCTTCGGCCGTATTACTGTCCGCACTGCCCCAACAGCTTTGGTGAGGAGCACAGTTTAAAGACACACATCAAACGGATTCACCAGTCGCTGTCGGTCGAGGAGACGAACAACGCCCTGTTGAGTCTACAGTTCGACCTGTCCATCAACAACTGA
Protein Sequence
MIASSVLESRNVSFENYEVLENTNVLPMEVDLNNDGNSMLLQNYIIHQLDDGNYQLVLCESQNGQQSNEHQLKNDETPTQQLQTISSYRTTCIEMEKPLSPNTYSCIKCKEQFNNISLFRKHLKWHKAEKKFNCTKCAVGFNAENNLKVHSILHHPGHTNICPICNIKFQRKASLKSHMIVHQVEEVFACEECQAEFQNEDELLKHMEIHAVTRVLRNPSDALVCPYCKLDFSDMEKHKQHVARHVEVKKNILKGKKSRKRKGRSRVTSHKCKYCGKMFPKGCLLERHERIHTGEKPYVCNVCNKSFAQNGTLLIHLGSHTGVKPYSCTLCPAKFTQKGNFRAHIEKTHTAPKGNQKMYKCNQCDCIFKKVATLNGHVTKVHLNKGGQENVIDRVTDDLKMLNNAMTKIKKKVPLSPVQNIPGDSWVHLAESEVDDGVRRYLVRQRKVGDVRWYFCNYCSSRFKKPSDLIRHLRTHTREKPFKCTECNQAFSLKSTLMNHKKTHNNRDTNEQIKPHDEKNYISYMCVLCDKVFGSLDESQQHKSVHQHEIKSTENIIEAFIQETVHDRMFCPTENPYQCKTCNARFSRLINLKKHMMYHTGEKKHKCPLCTKTFITKYRLTEHVNYHKNIRNYSCQVCGKNFVTSSMLKRHMTVHNTLKLYCCQYCKGTFKTTLSLRAHIRYFHNSDESQNDEVEKSTGSRPETSQEMVATTEVGEPMTADPVVLTVTNGEQGQLDLNPDYPLVYVSINPLLNESAVNNNALPSDTLLFDSATQEASVLFDVGPVKEQPAMVDPNVVINSVGYEQHKEVAEPLSDVEMCLNSVPINIIAEDDGKAGVDLLNAQVFCVNCHKMFSDMAVFQGHACSAPSITQAPAVTEIAAAAVSDQPETIKYDLGPYMPLHKQDEVLLATDNVCKYCFKDFKKRSDLVRHLRTHTGERPFECSQCKKKFTLKSTLESHKRTHDGSQKNVSCDVCNANFTTKSSLKVHMLLHTGARPHACNFCEQTFRTSAIRKAHEKNIHLNSTRPPSSPKGVKLLKNVADEVANSLRQQETVTATEPAMLPLDFLLQIQNGGINLLEYAEDGQGPELGGVLGDPSPVADQATASRPPKVQCDVCNKMYSSKDVLRKHKKKIHGSNKFPCIKCDKSYGDFKELNNHLKKNHTGLRPYYCPHCPNSFGEEHSLKTHIKRIHQSLSVEETNNALLSLQFDLSINN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-