Basic Information

Insect: Rhynchophorus ferrugineus
Gene Symbol: ham
Assembly: GCA_014462685.1
Location: JAACXV010013913.1:2926-27454[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0048 12 6.3 0.3 12 44 106 135 100 137 0.87

2 9 0.064 1.6e+02 2.7 1.5 13 38 137 159 132 164 0.84

3 9 0.0013 3.4 8.1 2.1 15 43 168 193 158 194 0.87

4 9 0.15 3.7e+02 1.6 0.2 19 38 201 217 198 222 0.83

5 9 0.94 2.4e+03 -1.0 4.1 4 38 215 245 212 250 0.78

6 9 7.1 1.8e+04 -3.8 5.3 4 26 243 265 240 274 0.76

7 9 6.8e-06 0.017 15.4 0.3 12 41 570 596 554 598 0.77

8 9 7.1e-06 0.018 15.4 1.9 17 44 603 627 597 627 0.88

9 9 0.072 1.8e+02 2.6 0.2 14 41 629 653 626 655 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0048	12	6.3	0.3	12	44	106	135	100	137	0.87
2	9	0.064	1.6e+02	2.7	1.5	13	38	137	159	132	164	0.84
3	9	0.0013	3.4	8.1	2.1	15	43	168	193	158	194	0.87
4	9	0.15	3.7e+02	1.6	0.2	19	38	201	217	198	222	0.83
5	9	0.94	2.4e+03	-1.0	4.1	4	38	215	245	212	250	0.78
6	9	7.1	1.8e+04	-3.8	5.3	4	26	243	265	240	274	0.76
7	9	6.8e-06	0.017	15.4	0.3	12	41	570	596	554	598	0.77
8	9	7.1e-06	0.018	15.4	1.9	17	44	603	627	597	627	0.88
9	9	0.072	1.8e+02	2.6	0.2	14	41	629	653	626	655	0.82

Sequence Information

Coding Sequence: atgcatagaaaaaaaaatgctaaGaTTGTTACTGGTACAGGAGTCCGAGGATGGTTAGACGGATCACTGGAGCTCCAAAACTGGTTAAAATTCATCCGAAGTATCCCGAATAAGAACCTGGCTAACATGAGATATTTCCTGATAAACGGACAGCTCTGGTACGAAAGTATTGTGGAAATACCCAGCGGGACAGAGCTGATTCTGGGACCCAAGGAACCACTAAATCTCCAGGATATGTTCGGCGATCACGGCGACGAGAGATCGGATCGAGAAACGAtaTCCCAGTCAAGTGCAACAGCAGAAGAGCACGAGGAAGAAGATGATAATCAGACTCGTTGTTACCATTGCGAACAGCCGTTCAGTGATGTTGAAAAacTAGACGAACATCTGATCCAGAAGCACAATTGTCGCAGGAACGAGTACAGATGCGATTTGTGTCCGAAAGCCTATTCGGACAAACCCTGCTTGATCAAGCACCGAGCTGATATACACGGCGAGACCAAGAAATACCACTGCGAGAACTGTCCTAAGGTTTTTACTGATCCCAGTAATCTCCAGAGACATATTAGGACCAATCACGTCGGTGCCAGATCCCATGCCTGTCCCGAATGCGGGAAAACTTTCGGGAGTTCTTCGGGATTGAAACAACACACTCATATCCATTCATCGGTCAAACCTTTCCAGTGCGAAGTGTGCTTTAAGgcGTACACACAGTTCTCGAACCTCTGTCGACACAAGCGGATGCACATCAACTGCAGGCTACAGATCAAGTGCGTCAAGTGCAACCAATCATTCCCCTCCAGCGCAGCGTTGtccaaacataaaaaatattgcgaCTCCACCAATCAGACGCCGACGTTAACCTCACCGCCTCAGCTTCCGATGGCCAGCAGCTACCCGTTCTATCGGCCCTCGGCCGTTCCTATTTTTCCGTTCCCCACTCAGTTCCCGAACTATCAAATCCAGCAGATGTTCCCGTCCGCTCCCGCACCTAGTTTTCTGCCTCCTTTCTTTCTGAATCAGATACCTCGACCGAAACTGGAAGAGGAACCACCACGAAAGAAGGTTAAGATTGAAAGCGATAAACGAGACGCCATGGTGAAGGAGAGATTTACACCACCTAGATTACCGAGCATCACCGAGAAAGTCAGTCCCCCGACGGCGGAGGAAGCCGATTTGACGCCATCACCAGCCCGACCTAGTGTCATGACACAATCCAGAGAAAAGTGCGTGTCTGTGTCAGAAGATGAGACGCCCAAAGATTTCACAATATCCCGTCCTAGTTCAGCTACAGCCAGTGAAGATGGAGACCAACCCCTGGACTTATCCGGCTGGAACTCAACTCTACGAACGCCGGAGAAGCCCGAGAAGAAAGCCGAGAAGATACGAAGCCGCTCACCAACACCTCCACCGGAGGTCAAGGAGGAGAAGATCGAGATAGTCGATTtggaagaacaaaaaaaaacttcgcCGGTCACCCCATCGATGGTGTATCCCAGACCGACCTACCCGATGATGCTGGAGATGTACCGGTCAAATTTCCCCAACTTCCAACAGGCCAATGACAGACTGTTACCGTTTGGACCGCACAGATTTCCATTTTTAAACCCATCCCTGCACCAGCGTTTCGATTTGCTGAGACCAAACCTGCAAAGTTTTAACCCCGTCAAGTCCTACCACGAAGCGATCCACCCCCAGAACCAGGGCAAAATCAAGGATAGATACGCGTGCAAGTTCTGCGGGAAGGTGTTCCCCAGGTCCGCGAATCTGACCCGACACTTAAGGACTCACACGGGCGAGCAACCGTACAAGTGCCGGTACTGCGAGAGGAGCTTCAGCATCTCCAGCAATCTGCAGAGACACGTCAGGAACATCCATAACAAGGAGAAACCCTTCAAATGTCCGTTGTGCGACCGAGCATTCGGCCAACAGACCAACCTGGACCGTCACCTGAAGAAACACGAGACCGAGGATGGAAACGGAGTGGTAGCCGTGGCAGATTCACCAGGAAGCAGTAACGAGAACGATCGGGAGGAGGCGTATATCCGACTCGACGAAATCCGGAATTTTGTCGGTAAAGTCACCACCAACGTCCAAGACTACTACAACCCCACCAGGTTATACACGCCTCCATTCCAAAACGACATAGACGTAGTCGGAAAGGAAGACGATGACTCGGAGGTGTACTCGAACGAGTCGGTGGAGGAGTTCTCCAAGAAGGAAGCCAATAAAGAGGTTTTACTCAATAACAACGATCAACCCATAGAAGTATCTACTTAG
Protein Sequence: MHRKKNAKIVTGTGVRGWLDGSLELQNWLKFIRSIPNKNLANMRYFLINGQLWYESIVEIPSGTELILGPKEPLNLQDMFGDHGDERSDRETISQSSATAEEHEEEDDNQTRCYHCEQPFSDVEKLDEHLIQKHNCRRNEYRCDLCPKAYSDKPCLIKHRADIHGETKKYHCENCPKVFTDPSNLQRHIRTNHVGARSHACPECGKTFGSSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHINCRLQIKCVKCNQSFPSSAALSKHKKYCDSTNQTPTLTSPPQLPMASSYPFYRPSAVPIFPFPTQFPNYQIQQMFPSAPAPSFLPPFFLNQIPRPKLEEEPPRKKVKIESDKRDAMVKERFTPPRLPSITEKVSPPTAEEADLTPSPARPSVMTQSREKCVSVSEDETPKDFTISRPSSATASEDGDQPLDLSGWNSTLRTPEKPEKKAEKIRSRSPTPPPEVKEEKIEIVDLEEQKKTSPVTPSMVYPRPTYPMMLEMYRSNFPNFQQANDRLLPFGPHRFPFLNPSLHQRFDLLRPNLQSFNPVKSYHEAIHPQNQGKIKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCRYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRAFGQQTNLDRHLKKHETEDGNGVVAVADSPGSSNENDREEAYIRLDEIRNFVGKVTTNVQDYYNPTRLYTPPFQNDIDVVGKEDDDSEVYSNESVEEFSKKEANKEVLLNNNDQPIEVST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00444422;
90% Identity: iTF_00376548;
80% Identity: iTF_01307431;